From 6075ba9359386c11ea2e1163aae03eddcaaf7b04 Mon Sep 17 00:00:00 2001
From: GitHub Action <action@github.com>
Date: Wed, 25 Oct 2023 18:37:04 +0000
Subject: [PATCH] Update documentation

---
 User-Manual/Hardware-requirements.html             | 2 +-
 _sources/User-Manual/Hardware-requirements.rst.txt | 2 +-
 searchindex.js                                     | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/User-Manual/Hardware-requirements.html b/User-Manual/Hardware-requirements.html
index 3b56e67..975ca5a 100644
--- a/User-Manual/Hardware-requirements.html
+++ b/User-Manual/Hardware-requirements.html
@@ -517,7 +517,7 @@ <h2>For Neuropixels probes<a class="headerlink" href="#for-neuropixels-probes" t
 <section id="id1">
 <h3>Computer specs<a class="headerlink" href="#id1" title="Permalink to this heading">#</a></h3>
 <ul class="simple">
-<li><p><strong>Operating system</strong> - Windows 7 or 10</p></li>
+<li><p><strong>Operating system</strong> - Windows 7, 10, or 11</p></li>
 <li><p><strong>Processor</strong> - minimum of 6 cores, 3.5 GHz; an <strong>Intel</strong> processor is recommended for optimum driver compatibility, but many users have AMD processors that work without issues.</p></li>
 <li><p><strong>Memory</strong> - at least 2 GB per simultaneously recorded probe; a minimum of 16 GB is recommended.</p></li>
 <li><p><strong>Data storage</strong> - a solid state drive is essential (at least 500 MB/s write speed); an NVMe drive is strongly recommended.</p></li>
diff --git a/_sources/User-Manual/Hardware-requirements.rst.txt b/_sources/User-Manual/Hardware-requirements.rst.txt
index 84f2b14..1bcf878 100644
--- a/_sources/User-Manual/Hardware-requirements.rst.txt
+++ b/_sources/User-Manual/Hardware-requirements.rst.txt
@@ -57,7 +57,7 @@ For Neuropixels probes
 Computer specs
 ################
 
-* **Operating system** - Windows 7 or 10
+* **Operating system** - Windows 7, 10, or 11
 
 * **Processor** - minimum of 6 cores, 3.5 GHz; an **Intel** processor is recommended for optimum driver compatibility, but many users have AMD processors that work without issues.
 
diff --git a/searchindex.js b/searchindex.js
index 4e8657c..a0e248a 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["Developer-Guide/Common-and-external-libraries", "Developer-Guide/Compiling-plugins", "Developer-Guide/Compiling-the-GUI", "Developer-Guide/Creating-a-new-plugin", "Developer-Guide/Distributing-plugins", "Developer-Guide/Modifying-the-host-application", "Developer-Guide/Open-Ephys-Plugin-API/Data-Threads", "Developer-Guide/Open-Ephys-Plugin-API/File-Sources", "Developer-Guide/Open-Ephys-Plugin-API/Processor-Plugins", "Developer-Guide/Open-Ephys-Plugin-API/Record-Engines", "Developer-Guide/Open-Ephys-Plugin-API/Visualizer-Plugins", "Developer-Guide/Open-Ephys-Plugin-API/index", "Developer-Guide/index", "FAQ/index", "Tutorials/Closed-Loop-Latency", "Tutorials/Data-Synchronization", "Tutorials/How-To-Make-Your-Own-Plugin", "Tutorials/Making-Your-Own-Visualizer-Plugin", "Tutorials/index", "User-Manual/Before-you-begin", "User-Manual/Building-a-signal-chain", "User-Manual/Exploring-the-user-interface", "User-Manual/Hardware-requirements", 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[0, 2, 9, 14, 17, 23, 45, 47], "x": [0, 2, 10, 13, 15, 16, 17, 20, 21, 26, 35, 36, 45, 52, 57, 63, 65, 68], "onc": [0, 1, 2, 4, 5, 8, 9, 10, 13, 14, 15, 16, 17, 19, 20, 21, 31, 34, 35, 39, 42, 44, 45, 47, 52, 56, 58, 59, 61, 63, 66, 71], "sure": [0, 1, 2, 4, 8, 10, 12, 14, 16, 17, 19, 22, 24, 26, 27, 28, 29, 32, 41, 45, 48, 49, 50, 51, 53, 55, 57, 58, 63, 67, 71], "abl": [0, 2, 12, 13, 14, 15, 16, 17, 19, 20, 21, 32, 36, 42, 45, 48, 51, 52, 56, 59, 67], "cmake_prefix_path": 0, "msvc": 0, "cmake_current_source_dir": 0, "elseif": 0, "appl": [0, 1, 2], "two": [0, 1, 2, 3, 5, 10, 11, 13, 14, 15, 16, 20, 26, 28, 30, 34, 40, 42, 45, 46, 48, 50, 51, 54, 55, 58, 59, 65, 66, 67, 68, 73], "differ": [0, 1, 2, 5, 8, 10, 11, 14, 15, 16, 17, 19, 20, 21, 26, 29, 30, 31, 35, 36, 37, 41, 42, 45, 47, 49, 51, 54, 58, 62, 65, 66, 67, 70, 71, 72, 73], "most": [0, 1, 3, 5, 8, 13, 14, 15, 17, 19, 21, 22, 37, 42, 45, 67, 68, 71, 73], "commonli": [0, 37], "find_packag": 0, "recommend": [0, 1, 2, 3, 6, 9, 11, 12, 13, 14, 16, 19, 20, 22, 35, 42, 43, 44, 45, 52, 63, 64, 66, 68, 70, 71], "would": [0, 6, 8, 13, 18, 19, 20, 21, 40, 45, 49, 51, 73], "zlib": 0, "target_link_librari": 0, "commonlib_nam": 0, "zlib_librari": 0, "target_include_directori": 0, "privat": [0, 4, 16, 17], "zlib_include_dir": 0, "finder": 0, "find_librari": 0, "find_path": 0, "respect": [0, 26, 45, 60], "search": [0, 13], "varieti": [0, 5, 14, 19, 21, 22, 45, 75], "list": [0, 3, 4, 5, 8, 12, 14, 16, 17, 20, 22, 24, 39, 42, 45, 51, 66, 67, 71, 73], "might": [0, 52], "architectur": [0, 19], "return": [0, 6, 7, 8, 9, 10, 11, 14, 16, 17, 43, 45, 54, 65, 72, 73], "found": [0, 13, 15, 19, 20, 22, 27, 35, 36, 39, 41, 42, 43, 45, 50, 52, 55, 60, 63, 66, 71, 73], "zmq_librari": 0, "libzmq": 0, "v120": 0, "mt": 0, "4_0_4": 0, "zmq_include_dir": 0, "lastli": [0, 17, 20, 67], "expect": [0, 14, 19, 32, 42, 46, 67], "e": [0, 3, 6, 8, 11, 14, 15, 21, 22, 25, 30, 32, 37, 40, 42, 44, 45, 48, 49, 50, 52, 58, 59, 63, 67, 68, 70, 71, 72, 73], "tell": [0, 16], "end": [0, 3, 5, 6, 14, 15, 16, 17, 25, 30, 32, 36, 39, 42, 50, 71, 73], "cmake_library_architectur": 0, "destin": 0, "gui_bin_dir": 0, "env": [0, 52], "home": [0, 21, 52], "api8": [0, 21], "automat": [0, 2, 3, 5, 6, 8, 10, 11, 14, 15, 16, 17, 20, 21, 23, 25, 36, 39, 40, 42, 44, 45, 47, 48, 50, 54, 56, 58, 60, 65, 66, 67, 68, 69, 70, 71, 73], "correct": [0, 8, 14, 16, 30, 45, 48, 50, 53, 57, 58], "whether": [1, 5, 6, 10, 15, 19, 21, 22, 36, 45, 62, 71], "re": [1, 2, 3, 5, 8, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 25, 37, 40, 42, 45, 49, 50, 51, 58, 59, 71, 72, 73, 74, 75], "across": [1, 4, 7, 8, 15, 19, 30, 31, 36, 37, 42, 44, 45, 50, 54, 57, 58, 59, 60, 65, 66, 71, 73], "three": [1, 5, 6, 8, 9, 10, 19, 20, 24, 29, 30, 37, 41, 51, 58, 60, 63, 66, 73], "note": [1, 2, 6, 8, 10, 11, 14, 15, 16, 17, 20, 45, 47, 48, 50, 59, 68, 71, 72], "see": [1, 3, 6, 8, 9, 11, 13, 14, 16, 17, 19, 20, 21, 22, 23, 31, 32, 33, 35, 39, 41, 42, 45, 47, 49, 50, 54, 56, 58, 66, 67, 71, 73], "don": [1, 3, 10, 12, 13, 19, 20, 21, 37, 71], "work": [1, 2, 6, 12, 13, 14, 15, 17, 19, 20, 22, 23, 24, 27, 32, 34, 36, 44, 45, 48, 50, 51, 54, 55, 65, 67, 69, 71, 72, 75], "equal": [1, 15, 16, 17, 22, 23, 37, 63, 75], "mac": [1, 2, 3, 23, 24], "librari": [1, 5, 14, 15, 17, 19, 21, 35, 50, 52, 56, 68, 69, 70, 71, 72], "onli": [1, 5, 6, 7, 8, 9, 11, 15, 16, 17, 19, 20, 21, 24, 25, 26, 29, 31, 34, 36, 37, 38, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 67, 71, 72, 73, 75], "certain": [1, 11, 16, 45, 48, 54, 65, 72, 75], "Be": [1, 8, 17, 19, 55, 58], "check": [1, 8, 11, 13, 14, 15, 16, 20, 21, 25, 26, 42, 45, 53, 67, 74], "relev": [1, 3, 5, 7, 9, 10, 16, 17, 40, 49, 53, 68], "document": [1, 3, 4, 6, 11, 12, 16, 21, 23, 35, 54, 58, 59, 63, 65, 69, 71, 72, 74, 75], "compat": [1, 9, 13, 19, 22, 32, 36, 63, 67, 69, 70, 71, 74], "main": [1, 2, 3, 5, 10, 11, 12, 15, 16, 17, 19, 23, 34, 42, 43, 45, 59, 64, 67, 68, 71], "download": [1, 2, 4, 15, 19, 20, 23, 24, 42, 45, 63, 67], "plan": [1, 5, 12, 22, 23, 45, 50, 56, 67], "own": [1, 2, 3, 4, 5, 6, 8, 13, 15, 18, 19, 20, 34, 39, 42, 45, 48, 52, 59, 60, 67, 68, 71, 73, 74], "fork": [1, 2, 4, 5, 67], "via": [1, 2, 3, 5, 6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 19, 21, 24, 25, 45, 46, 47, 51, 52, 63, 66, 67, 71, 72, 73], "origin": [1, 5, 15, 19, 20, 33, 35, 41, 42, 48, 58, 60, 62, 71], "zip": [1, 4], "offici": [1, 2, 12, 13, 19, 67], "level": [1, 2, 5, 12, 13, 14, 15, 19, 21, 29, 45, 55, 69], "befor": [1, 2, 6, 8, 12, 16, 17, 23, 24, 27, 30, 32, 38, 39, 41, 42, 45, 49, 51, 52, 55, 57, 58, 64, 67, 68, 71], "attempt": [1, 7, 14, 21], "1": [1, 3, 6, 8, 9, 10, 14, 15, 16, 17, 20, 22, 24, 26, 27, 28, 29, 33, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 56, 58, 62, 64, 65, 66, 70, 71, 72, 73], "2": [1, 14, 15, 16, 22, 24, 26, 33, 35, 37, 38, 41, 42, 44, 45, 46, 47, 54, 57, 58, 65, 66, 70, 71], "gener": [1, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 16, 17, 19, 20, 21, 22, 23, 24, 32, 34, 35, 39, 42, 44, 45, 47, 48, 49, 52, 55, 58, 62, 63, 66, 72, 73], "visual": [1, 2, 5, 8, 11, 12, 14, 16, 18, 19, 21, 23, 25, 30, 31, 35, 40, 45, 47, 51, 52, 56, 59, 60, 63, 64, 73, 74], "studio": [1, 2, 12, 23], "2022": [1, 2, 23, 27, 55, 73], "project": [1, 2, 13, 71], "prompt": [1, 2, 23, 52], "insid": [1, 2, 3, 4, 5, 6, 9, 10, 11, 14, 16, 17, 21, 28, 36, 52, 59, 64, 67, 69, 71], "top": [1, 2, 4, 5, 8, 17, 21, 25, 28, 36, 42, 45, 47, 50, 54, 55, 65, 67, 71], "cd": [1, 2], "g": [1, 2, 3, 6, 8, 10, 11, 14, 15, 21, 22, 25, 32, 37, 40, 42, 45, 48, 49, 50, 58, 59, 63, 67, 70, 71, 72, 73], "17": [1, 2], "A": [1, 2, 6, 7, 8, 9, 10, 11, 15, 17, 21, 22, 27, 32, 35, 36, 38, 40, 42, 45, 50, 51, 52, 54, 55, 57, 58, 61, 63, 65, 66, 67, 68, 71], "x64": [1, 2], "earlier": [1, 2, 45, 61], "substitut": [1, 2, 14, 20, 72], "last": [1, 2, 5, 15, 17, 21, 42, 45, 50, 67], "16": [1, 2, 6, 7, 20, 22, 26, 36, 42, 44, 47, 49, 54, 65, 68, 69, 70, 72], "2019": [1, 2, 19, 23], "15": [1, 2, 17, 26, 45, 49], "2017": [1, 2, 19, 23], "win64": [1, 2], "14": [1, 2], "2015": [1, 2, 23], "12": [1, 2, 15, 16, 26, 44, 54], "2013": [1, 2], "next": [1, 2, 5, 6, 7, 8, 11, 13, 17, 21, 24, 31, 45, 48, 53, 62, 67, 71, 72], "launch": [1, 2, 14, 17, 20, 21, 23, 45, 67, 72, 73], "oe_plugin_": 1, "sln": [1, 2], "wa": [1, 2, 6, 8, 9, 10, 16, 19, 20, 21, 31, 35, 41, 45, 52, 58, 59, 60, 62, 67, 68, 71, 72, 73, 74, 75], "select": [1, 2, 3, 4, 5, 7, 14, 15, 16, 17, 20, 21, 24, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 40, 42, 47, 49, 50, 51, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 71, 73], "configur": [1, 6, 7, 8, 11, 16, 17, 19, 21, 22, 42, 67], "debug": [1, 2, 11, 16, 62, 67], "releas": [1, 2, 5, 11, 13, 16, 19, 23, 45, 67, 73], "solut": [1, 2, 19, 42, 44], "all_build": [1, 2], "That": [1, 4, 19, 42, 51, 61], "process": [1, 3, 5, 6, 7, 9, 11, 13, 14, 16, 17, 19, 21, 22, 25, 26, 35, 37, 40, 45, 48, 49, 52, 55, 56, 58, 66, 67, 71, 74], "except": [1, 20, 34, 42, 61, 71], "thu": [1, 65], "trigger": [1, 8, 11, 12, 13, 14, 16, 21, 35, 36, 43, 46, 54, 55, 62, 63, 65, 72, 73], "procedur": [1, 15], "xcode": [1, 2, 12], "final": [1, 2, 9, 14, 16, 17, 20, 21, 45, 52, 55], "period": [1, 2, 55, 66], "critic": [1, 2, 3, 16, 17, 21, 22, 45], "get": [1, 2, 4, 8, 12, 13, 16, 17, 19, 21, 22, 42, 43, 73, 75], "xcodeproj": [1, 2], "live": [1, 2, 3, 5, 10, 21, 35, 45, 75], "scheme": [1, 2, 4, 37, 45, 70, 71], "silicon": [1, 2, 22, 50], "ll": [1, 2, 3, 4, 8, 12, 13, 15, 16, 17, 19, 20, 21, 22, 24, 32, 42, 43, 45, 63, 67], "profil": [1, 2, 22], "us": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 30, 31, 32, 34, 35, 36, 37, 39, 43, 45, 46, 47, 49, 50, 51, 54, 55, 56, 57, 58, 60, 61, 62, 63, 64, 65, 69, 72, 73, 74], "rosetta": [1, 2], "target": [1, 2], "my": [1, 2, 13], "appear": [1, 2, 8, 10, 13, 14, 16, 17, 20, 21, 24, 36, 37, 42, 45, 54, 60, 65, 67, 70], "nativ": [1, 2, 56], "few": [1, 2, 13, 15, 17, 19, 24, 42, 45, 48, 49, 56, 57, 59], "involv": [1, 2, 14, 16, 17, 22, 61, 70], "won": [1, 2, 13, 14, 16, 17, 19, 20, 21, 32, 47, 67, 71], "interest": [1, 2, 4, 12, 13, 17, 45, 49, 58, 62, 63, 74], "pleas": [1, 2, 4, 12, 13, 15, 16, 17, 18, 19, 24, 36, 42, 45, 48, 54, 57, 59, 65, 67, 74], "reach": [1, 2, 14, 15, 19, 36, 37, 41, 42, 49], "out": [1, 2, 3, 8, 12, 13, 14, 15, 17, 19, 20, 21, 23, 30, 32, 37, 42, 44, 45, 52, 54, 55, 58, 65, 67, 71, 72, 74, 75], "org": [1, 2, 12, 13, 15, 18, 36, 45], "info": [1, 2, 3, 6, 7, 8, 11, 12, 13, 16, 17, 21, 33, 45, 50, 67], "default": [1, 3, 5, 6, 7, 8, 9, 11, 14, 15, 16, 17, 21, 27, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 55, 56, 57, 58, 59, 60, 62, 63, 64, 66, 67, 71, 72], "mode": [1, 2, 10, 11, 16, 20, 33, 54, 55, 57, 63, 64, 67, 72, 73], "modifi": [1, 3, 8, 10, 11, 12, 16, 17, 19, 20, 21, 31, 33, 45, 46, 47, 59, 67, 71, 72], "instead": [1, 2, 3, 6, 8, 10, 11, 19, 40, 52, 56, 59, 60, 62, 64, 67, 71, 73], "makefil": [1, 2, 12], "enter": [1, 2, 4, 23, 37, 47, 52, 56, 63], "unix": [1, 2], "dcmake_build_typ": [1, 2], "variabl": [1, 2, 8, 11, 16, 17, 39, 52], "d": [1, 2, 5, 12, 13, 14, 17, 19, 22, 23, 54], "argument": [1, 2, 8, 11, 26], "perman": [1, 2], "valu": [1, 2, 4, 6, 7, 9, 10, 11, 14, 15, 20, 21, 24, 26, 30, 36, 37, 38, 41, 42, 46, 48, 54, 55, 58, 60, 63, 65, 66, 68, 69, 70, 72, 73], "even": [1, 2, 8, 13, 15, 42, 55, 71], "therebi": [1, 2], "overwrit": [1, 2, 8, 48], "unset": [1, 2], "uvari": [1, 2], "finish": [1, 2, 16, 17, 45], "addit": [1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 15, 17, 18, 20, 21, 22, 30, 39, 42, 45, 48, 59, 61, 62, 64, 65, 66, 67, 68, 73], "sourc": [2, 4, 5, 6, 8, 11, 12, 13, 14, 15, 16, 17, 19, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 64, 65, 66, 68, 69, 71, 73, 74, 75], "code": [2, 6, 7, 8, 9, 11, 12, 14, 16, 17, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 68, 69, 70, 73, 74], "free": [2, 19, 71], "commun": [2, 4, 5, 6, 8, 12, 13, 14, 19, 21, 23, 24, 32, 45, 46, 67], "edit": [2, 5, 14, 45, 47, 48, 58, 62, 63, 66], "fine": [2, 22, 45, 46, 67, 71], "vs2013": 2, "system": [2, 12, 19, 21, 22, 23, 25, 32, 35, 52, 63, 75], "current": [2, 5, 6, 8, 9, 10, 11, 13, 16, 17, 19, 20, 21, 23, 25, 28, 31, 32, 36, 37, 43, 45, 49, 50, 52, 56, 58, 59, 60, 61, 62, 63, 67, 68, 69, 71, 72, 73, 74], "tool": [2, 13, 14, 19, 33, 45, 59, 69, 70, 71], "plugin": [2, 5, 6, 7, 9, 13, 14, 15, 18, 19, 20, 21, 22, 23, 36, 52, 68, 70, 71, 72, 74, 75], "shortcut": [2, 67], "kei": [2, 4, 5, 14, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 74], "f6": 2, "press": [2, 11, 14, 15, 16, 19, 20, 21, 31, 38, 39, 42, 45, 47, 50, 51, 54, 58, 59, 62, 63, 65, 67, 71], "In": [2, 5, 6, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 22, 24, 26, 35, 36, 37, 39, 42, 43, 45, 49, 50, 54, 57, 58, 59, 60, 61, 62, 65, 66, 70, 71, 73], "explor": [2, 45, 71, 74], "right": [2, 4, 5, 10, 12, 13, 14, 15, 16, 17, 19, 20, 21, 25, 26, 28, 29, 30, 36, 37, 40, 42, 45, 47, 49, 50, 51, 54, 56, 58, 59, 60, 61, 62, 64, 71], "startup": [2, 21, 45], "debugg": 2, "store": [2, 5, 7, 8, 9, 10, 11, 13, 17, 19, 21, 22, 26, 36, 43, 45, 52, 69, 71, 72, 73], "termin": [2, 6, 14, 15, 21, 23, 35, 42, 52, 61, 70], "o": [2, 5, 14, 16, 17, 22, 24, 45, 54, 65], "10": [2, 14, 15, 16, 17, 22, 27, 35, 36, 45, 49, 52, 55, 70], "7": [2, 22, 41, 45, 58, 70], "later": [2, 8, 10, 17, 20, 46, 58], "sudo": [2, 23], "content": [2, 8, 21, 73], "readi": [2, 4, 8, 16, 42, 45, 52, 55], "hit": [2, 14, 21], "drop": [2, 5, 16, 17, 20, 21, 23, 24, 25, 32, 35, 36, 40, 42, 45, 48, 50, 52, 53, 54, 55, 56, 57, 59, 61, 65, 67], "down": [2, 15, 16, 17, 20, 24, 25, 35, 36, 42, 45, 48, 50, 54, 55, 57, 59, 62, 65, 67, 71, 72], "menu": [2, 14, 15, 16, 17, 20, 24, 25, 35, 36, 37, 40, 42, 45, 48, 49, 50, 54, 55, 57, 58, 59, 62, 63, 65, 67, 72, 73], "stop": [2, 5, 6, 9, 10, 11, 14, 15, 17, 20, 21, 27, 36, 37, 42, 43, 52, 53, 58, 68, 69, 71, 73], "ubuntu": 2, "debian": [2, 23], "distribut": [2, 7, 14, 19, 30, 67, 71], "apt": 2, "updat": [2, 3, 4, 5, 7, 10, 11, 15, 16, 20, 32, 36, 37, 38, 47, 50, 52, 57, 62, 67, 68, 71, 72, 73], "resourc": [2, 5, 13, 16, 17, 20, 36, 43, 66, 73], "install_linux_depend": 2, "sh": 2, "acquisit": [2, 3, 5, 6, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 32, 34, 36, 37, 38, 39, 42, 43, 47, 48, 50, 52, 53, 57, 58, 59, 62, 65, 66, 67, 68, 69, 71, 73, 74], "board": [2, 13, 14, 20, 21, 23, 24, 32, 42, 45, 65, 71, 72, 73, 74], "cp": [2, 23], "40": [2, 14, 17, 23, 36], "rule": [2, 23], "etc": [2, 11, 23, 45, 51, 54, 67, 71], "udev": [2, 23], "servic": [2, 23], "restart": [2, 23, 33, 45], "fedora": [2, 23], "cento": [2, 23], "distro": [2, 22], "udevadm": [2, 23], "conrol": 2, "reload": [2, 21, 23, 45, 52], "success": [2, 7, 24, 25, 49, 67], "binari": [2, 3, 5, 7, 9, 15, 20, 36, 45, 67, 71, 72, 73], "primari": [3, 11, 16, 43, 62, 67], "mean": [3, 13, 15, 19, 36, 37, 42, 50, 52, 55, 62, 70, 71], "extend": [3, 6, 11, 12, 16, 17, 19, 37, 39, 75], "hardwar": [3, 5, 8, 11, 13, 19, 20, 21, 34, 48, 62, 65, 71, 73], "incom": [3, 5, 6, 7, 8, 9, 11, 14, 16, 17, 20, 28, 30, 31, 33, 34, 35, 37, 40, 42, 45, 46, 48, 49, 51, 53, 55, 57, 59, 60, 62, 63, 64, 66, 67, 71], "real": [3, 5, 7, 9, 10, 14, 15, 17, 19, 35, 38, 41, 44, 52, 54, 65, 67, 71], "displai": [3, 5, 8, 11, 12, 14, 17, 20, 21, 25, 31, 40, 44, 45, 50, 55, 64, 65, 67, 71, 72, 73], "output": [3, 5, 8, 11, 14, 15, 16, 21, 27, 30, 32, 40, 41, 42, 43, 45, 48, 55, 61, 63, 67, 72], "read": [3, 6, 7, 8, 9, 12, 14, 15, 19, 20, 21, 22, 23, 35, 45, 52, 55, 62, 67, 71, 73, 75], "still": [3, 14, 15, 20, 42, 45, 52, 73], "datathread": [3, 6], "multi": [3, 14, 30, 33, 59, 66, 67], "band": [3, 14, 15, 26, 30, 42, 45, 55, 67], "integr": [3, 14, 19, 30, 45, 50, 67], "probe": [3, 15, 20, 26, 31, 35, 37, 42, 58, 64, 67, 71, 72, 73, 74], "show": [3, 5, 10, 14, 17, 20, 21, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 48, 55, 57, 59, 63, 66, 67], "inform": [3, 4, 5, 6, 7, 8, 9, 10, 11, 15, 16, 17, 20, 21, 35, 37, 40, 42, 44, 45, 50, 52, 56, 66, 67, 68, 69, 70, 71, 73, 74, 75], "about": [3, 5, 6, 7, 8, 9, 11, 12, 13, 14, 16, 17, 20, 21, 22, 23, 31, 42, 44, 45, 49, 50, 63, 66, 67, 68, 70, 71, 73, 74], "doesn": [3, 5, 8, 15, 16, 17, 19, 22, 32, 54, 65], "word": [3, 62, 66, 68, 73], "code_directori": [3, 16, 17], "newplugin": 3, "prefer": [3, 11, 13, 16, 17, 73], "text": [3, 8, 9, 10, 11, 16, 17, 21, 26, 35, 43, 45, 50, 54, 58, 62, 65, 67, 69, 70, 72, 73], "editor": [3, 5, 6, 11, 14, 15, 20, 21, 25, 27, 28, 29, 30, 31, 35, 36, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 71, 73], "implement": [3, 6, 7, 8, 9, 10, 15, 16, 17, 19, 29, 32, 33, 72, 73], "method": [3, 6, 7, 9, 11, 19, 39, 48, 58, 68, 70, 72], "genericprocessor": [3, 5, 6, 10, 11, 16, 17, 39], "repeatedli": [3, 8], "loop": [3, 16, 17, 18, 19, 21, 22, 35, 49, 51, 55], "ha": [3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 26, 28, 34, 35, 37, 39, 40, 42, 45, 47, 49, 52, 54, 55, 56, 58, 60, 61, 62, 65, 66, 67, 68, 71, 72, 73, 75], "chanc": 3, "respond": [3, 6, 14, 15, 43, 51, 53, 62, 72], "canva": [3, 8, 16], "one": [3, 5, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 29, 31, 32, 35, 36, 41, 42, 43, 45, 46, 47, 48, 49, 50, 52, 53, 54, 58, 60, 61, 62, 63, 64, 65, 66, 67, 70, 71, 72, 73], "processorpluginlibrari": 3, "whenev": [3, 5, 8, 9, 10, 11, 16, 17, 19, 20, 30, 35, 37, 40, 43, 45, 53, 58, 63, 67, 71], "libvers": [3, 16, 17], "0": [3, 6, 7, 8, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 26, 27, 28, 29, 33, 35, 36, 37, 41, 42, 43, 44, 45, 46, 47, 49, 50, 51, 52, 56, 57, 58, 59, 60, 63, 66, 68, 70, 71, 72], "filter": [3, 4, 5, 8, 14, 16, 17, 20, 21, 25, 27, 28, 29, 30, 31, 39, 41, 43, 44, 45, 46, 48, 49, 52, 55, 57, 58, 59, 61, 62, 63, 64, 67, 71, 72, 73], "sink": [3, 4, 5, 8, 14, 16, 17, 20, 21, 24, 31, 33, 35, 37, 47, 50, 51, 55, 56, 57, 60, 61, 62, 63, 66, 67], "replac": [3, 16, 17, 50, 63, 73], "processorplugin": [3, 8, 16, 17], "class": [3, 6, 7, 8, 9, 10, 11, 16, 17, 19, 39, 52], "creator": [3, 16, 17], "createprocessor": [3, 16, 17], "acquir": [3, 5, 13, 14, 15, 19, 21, 22, 32, 35, 43, 45, 50, 63, 72, 73, 75], "becaus": [3, 8, 10, 11, 14, 16, 17, 19, 21, 23, 29, 31, 44, 48, 54, 60, 62, 65, 68, 73], "sychron": 3, "comput": [3, 5, 14, 15, 20, 21, 24, 29, 35, 45, 50, 51, 57, 63, 67, 71, 72, 73], "clock": [3, 5, 6, 11, 15, 21, 34, 42, 71, 73], "directli": [3, 5, 15, 16, 17, 20, 25, 42, 51, 54, 65, 71], "buffer": [3, 6, 7, 8, 9, 11, 14, 15, 16, 17, 21, 30, 32, 34, 47, 48, 52, 58, 61, 66, 67, 71], "becom": [3, 10, 15, 19, 45, 67, 71], "avail": [3, 4, 5, 6, 7, 8, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27, 32, 35, 36, 37, 38, 40, 42, 43, 45, 47, 56, 58, 60, 63, 66, 67, 68, 70, 72, 73, 75], "signal": [3, 5, 10, 11, 13, 15, 16, 17, 19, 22, 24, 25, 26, 27, 29, 31, 32, 35, 36, 38, 41, 42, 43, 45, 46, 47, 51, 52, 53, 54, 56, 57, 62, 63, 65, 66, 67, 71, 73, 74], "chain": [3, 5, 10, 11, 13, 15, 16, 17, 19, 22, 24, 25, 31, 32, 35, 38, 41, 43, 45, 46, 47, 51, 52, 53, 56, 62, 63, 66, 67, 71, 73, 74], "datathreadlibrari": 3, "datathreadclassnam": 3, "createdatathread": 3, "By": [3, 7, 9, 15, 20, 21, 28, 31, 32, 34, 36, 37, 42, 45, 47, 49, 57, 58, 60, 71], "recordenginelibrari": 3, "recordengin": [3, 4, 5, 9], "createrecordengin": 3, "recordengineplugin": 3, "reader": [3, 14, 16, 20, 22, 35, 55, 67, 72, 73], "stream": [3, 5, 6, 8, 9, 11, 13, 14, 16, 17, 18, 19, 20, 21, 31, 33, 36, 40, 43, 44, 46, 48, 50, 51, 52, 57, 60, 61, 64, 66, 67, 68, 69, 70, 71, 72, 74], "variou": [3, 8, 14, 31, 55, 72], "save": [3, 11, 14, 15, 20, 21, 22, 31, 32, 36, 44, 47, 52, 63, 64, 67, 68, 70, 71, 72, 73], "filesourcelibrari": 3, "filesourc": [3, 7], "semicolon": [3, 70], "extens": [3, 7, 9, 67], "csv": [3, 45], "json": [3, 7, 28, 38, 47, 50, 66, 71, 72, 73], "filesourceplugin": 3, "createfilesourc": 3, "altern": [3, 9, 14, 25, 42, 45, 48, 50], "glob_recurs": 3, "src_file": 3, "list_directori": 3, "fals": [3, 6, 7, 8, 11, 16, 17, 52], "source_path": 3, "comment": [3, 17], "test": [3, 5, 13, 14, 16, 17, 19, 20, 22, 23, 24, 35, 36, 41, 42, 51, 55], "been": [4, 6, 7, 8, 9, 10, 11, 13, 14, 16, 17, 19, 20, 21, 22, 28, 34, 35, 36, 39, 41, 42, 45, 47, 52, 54, 55, 56, 59, 61, 65, 67, 71, 73, 75], "made": [4, 19, 45, 56, 59, 67, 73], "through": [4, 5, 8, 12, 13, 14, 16, 17, 19, 20, 21, 23, 34, 42, 43, 44, 45, 46, 49, 50, 53, 55, 59, 61, 67, 68, 71, 73], "vet": 4, "polish": [4, 67], "core": [4, 8, 22, 65, 74], "team": [4, 5, 67], "believ": [4, 19], "share": [4, 11, 13, 15, 16, 19, 21, 34, 40, 42, 44, 45, 60, 62, 69, 71, 73], "touch": [4, 12, 13], "login": 4, "credenti": 4, "ci": 4, "organ": [4, 20, 21, 73], "navig": [4, 21, 50, 71], "secret": 4, "action": [4, 5, 8, 11, 20, 21, 36], "artifactoryapikei": 4, "enabl": [4, 5, 10, 11, 15, 17, 21, 23, 28, 42, 45, 48, 55, 71, 72], "openephi": [4, 36, 50, 70, 72], "jfrog": [4, 23], "io": [4, 23, 38, 46, 56], "administr": 4, "left": [4, 5, 8, 14, 15, 20, 21, 25, 36, 37, 40, 42, 45, 47, 50, 54, 58, 59, 60, 61, 65, 71], "sidebar": 4, "corner": [4, 14, 42, 45, 56, 60], "field": [4, 13, 19, 35, 45, 47, 61, 63, 66, 68, 70, 72], "string": [4, 6, 7, 8, 9, 10, 11, 16, 17, 21, 28, 33, 43, 45, 47, 50, 66, 68, 69, 70, 71, 72, 73], "append": [4, 11, 21, 43, 45, 61, 69, 70, 71, 72], "onlin": [4, 15, 21, 31, 55, 67, 71, 73], "psth": [4, 31, 67, 73], "onlinepsth": 4, "descript": [4, 6, 8, 16, 17, 67, 68, 70], "homepag": 4, "artifact": 4, "actual": [4, 8, 14, 15, 17, 19, 20, 42, 45, 48, 73], "openephyslib": 4, "develop": [4, 5, 8, 10, 13, 16, 17, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 74, 75], "doc": [4, 54], "deploi": 4, "mention": [4, 42], "importantli": [4, 20], "There": [4, 5, 6, 8, 11, 14, 15, 16, 17, 19, 21, 25, 29, 30, 36, 40, 45, 49, 52, 53, 54, 60, 63, 65, 71], "setup": [4, 5, 14, 15, 19, 42, 52, 55], "tag": 4, "latest": [4, 16, 17, 19, 21, 23, 27, 30, 31, 32, 33, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 50, 51, 52, 55, 56, 57, 59, 62, 63, 64, 66], "commit": [4, 5], "number": [4, 6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 21, 26, 27, 28, 30, 32, 33, 35, 37, 43, 45, 50, 51, 52, 54, 55, 56, 58, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71], "semant": 4, "v": [4, 14, 42, 58, 66], "front": 4, "workflow": [4, 32, 46, 63], "part": [4, 11, 19, 21, 22, 33, 36, 66, 71], "refer": [4, 15, 19, 31, 33, 50, 51, 54, 59, 65, 67, 68, 71, 72, 73], "understand": [4, 11, 12, 15, 19, 58, 59, 74], "proper": [4, 71], "push": [4, 5], "publish": [4, 19], "successfulli": [4, 5, 14, 45, 52, 66], "prior": [4, 5, 8, 13, 20, 28, 34, 42, 44, 45, 55, 58, 67, 72], "welcom": [5, 19, 74], "contribut": [5, 13, 19], "mai": [5, 7, 8, 11, 14, 19, 23, 29, 36, 42, 45, 47, 48, 52, 53, 54, 55, 57, 58, 65, 66, 67, 69, 71, 73], "bit": [5, 7, 16, 17, 62, 68, 69, 70], "knowledg": 5, "than": [5, 6, 10, 13, 17, 19, 20, 21, 22, 24, 26, 35, 36, 37, 40, 41, 42, 44, 45, 46, 48, 58, 67, 71, 73], "aim": [5, 71], "high": [5, 8, 14, 15, 19, 21, 24, 31, 42, 45, 48, 49, 51, 52, 53, 61, 69], "overview": [5, 21, 45], "substanti": [5, 13, 73], "minor": [5, 23], "bug": [5, 13, 19], "fix": [5, 12, 32, 36, 69], "strong": 5, "submit": [5, 12], "issu": [5, 12, 13, 19, 21, 22, 42, 45, 52, 71, 74], "describ": [5, 15, 16, 17, 70], "help": [5, 12, 13, 14, 19, 22, 26, 28, 36, 45, 62, 65, 73], "guid": [5, 13, 14, 16, 17, 20, 74, 75], "direct": [5, 19, 25, 26], "encourag": [5, 13, 16, 19], "choic": [5, 19, 23, 24], "accord": [5, 14, 55, 70, 71], "ensur": [5, 8, 10, 13, 14, 15, 16, 17, 19, 21, 32, 42, 45, 71], "avoid": [5, 10, 16, 20, 42, 45, 52, 61, 68, 73], "redund": [5, 59], "effort": [5, 13], "branch": [5, 17, 21, 23], "git": [5, 16, 17], "checkout": 5, "b": [5, 15, 16, 26, 33, 40, 45, 51, 54, 61], "newbranchnam": 5, "u": [5, 12, 13, 17, 24, 42], "pull": [5, 15, 42, 71], "request": [5, 6, 8, 9, 13, 17, 19, 50, 56, 72], "against": [5, 55], "good": [5, 19, 22, 42, 73], "merg": [5, 15, 17, 21, 35, 36, 40, 61, 73], "master": [5, 42, 45], "regener": 5, "upload": [5, 14, 24, 45], "artifactori": [5, 23], "empti": [5, 11, 14, 17], "where": [5, 8, 9, 11, 14, 16, 17, 19, 20, 21, 23, 28, 45, 52, 55, 71, 73], "up": [5, 6, 8, 14, 15, 19, 21, 22, 23, 25, 26, 27, 35, 40, 42, 45, 47, 50, 54, 56, 58, 60, 62, 65, 66, 67, 71, 73, 75], "jucelibrarycod": 5, "draw": [5, 10, 17], "data": [5, 11, 12, 13, 14, 16, 17, 18, 19, 21, 22, 35, 40, 41, 43, 44, 46, 47, 48, 50, 51, 55, 57, 63, 64, 67, 72, 73, 74, 75], "thread": [5, 8, 10, 11, 16, 17, 69, 71], "sampl": [5, 6, 7, 8, 9, 14, 15, 16, 17, 19, 20, 21, 25, 26, 29, 30, 32, 34, 38, 42, 45, 48, 52, 55, 58, 62, 66, 67, 68, 69, 70, 71, 73], "below": [5, 8, 11, 14, 16, 21, 22, 24, 28, 29, 32, 35, 36, 39, 41, 42, 45, 47, 48, 49, 50, 54, 55, 58, 65, 66, 67, 71], "diagram": [5, 15, 44], "showcas": [5, 19], "interact": [5, 11, 17, 21, 52, 67, 71], "solid": [5, 22], "black": [5, 14, 45], "arrow": [5, 14, 49, 58, 61, 62], "denot": 5, "ownership": [5, 19], "respons": [5, 6, 8, 14, 35], "destroi": 5, "dash": 5, "indic": [5, 8, 11, 14, 16, 20, 21, 33, 36, 37, 45, 50, 54, 55, 58, 61, 65, 68, 69, 71], "precis": [5, 13, 14, 15, 37, 48, 49], "callback": [5, 6, 8, 10, 11, 16, 17, 33], "drive": [5, 22, 71], "red": [5, 14, 20, 21, 37, 54, 58, 60, 63, 66], "flow": [5, 21], "processorgraph": 5, "leav": 5, "disk": [5, 15, 20, 21, 58, 59, 68, 71], "recordnod": [5, 11, 14, 43], "sent": [5, 6, 8, 16, 21, 27, 45, 47, 50, 54, 56, 62, 65, 72], "audio": [5, 14, 19, 20, 21, 58, 67], "monitor": [5, 20, 21, 42, 54, 58, 65, 67, 71], "audionod": 5, "dataviewport": 5, "orang": [5, 15, 34, 45, 60, 71], "messag": [5, 6, 9, 11, 16, 23, 24, 33, 36, 43, 45, 47, 63, 67, 68, 70, 73, 74], "pass": [5, 6, 8, 10, 14, 16, 17, 19, 20, 34, 42, 43, 44, 45, 46, 49, 50, 52, 53, 57, 58, 59, 61, 67, 71, 73], "between": [5, 8, 14, 15, 16, 17, 19, 21, 22, 27, 28, 30, 36, 37, 39, 40, 42, 48, 53, 54, 55, 57, 59, 60, 62, 65, 71], "editorviewport": [5, 42], "especi": [5, 15, 31, 50, 52], "import": [5, 6, 13, 14, 15, 16, 21, 22, 25, 26, 28, 33, 45, 52, 56, 62, 71, 73], "construct": [5, 11, 21], "verifi": [5, 23, 45], "openephysappl": 5, "deriv": [5, 6, 8, 10, 13, 70], "juceappl": 5, "initi": [5, 6, 8, 13, 14, 16, 17, 19, 24, 32, 39, 42, 43, 45, 46, 48, 52, 56, 57, 59], "mainwindow": 5, "much": [5, 13, 14, 19, 22, 44, 45, 73], "els": [5, 16, 17, 19], "central": [5, 67, 71], "uicompon": 5, "audiocompon": 5, "receiv": [5, 11, 13, 15, 17, 21, 26, 28, 34, 38, 47, 52, 55, 56, 58, 62, 66, 71], "state": [5, 8, 10, 11, 12, 14, 16, 17, 22, 28, 33, 36, 43, 45, 46, 52, 53, 62, 64, 66, 68, 69, 71, 72, 73], "handl": [5, 6, 8, 16, 17, 19, 21, 36, 43, 49, 73], "compon": [5, 10, 14, 19, 41, 59, 63], "card": [5, 14, 21, 22, 25, 42, 45, 67], "audiodevicemanag": 5, "effici": [5, 26, 68, 73], "audioprocessorgraph": 5, "five": [5, 11, 16, 17], "region": [5, 50, 63, 67], "controlpanel": 5, "occupi": 5, "cpu": [5, 14, 21, 22, 26], "usag": [5, 9], "meter": [5, 14, 21], "space": [5, 8, 10, 16, 20, 21, 37, 50, 68, 70, 71, 73], "plai": [5, 14, 15, 19, 20, 21, 36, 39, 63], "record": [5, 8, 11, 13, 14, 16, 17, 22, 26, 31, 34, 35, 36, 37, 40, 41, 42, 43, 45, 52, 55, 58, 59, 60, 63, 68, 69, 73, 74], "total": [5, 6, 7, 9, 15, 16, 35, 44, 52, 55, 66, 71], "spent": 5, "processorlist": 5, "sit": 5, "hand": [5, 15, 21, 25, 26, 28, 29, 37, 50, 54, 58, 62], "side": [5, 15, 21, 25, 26, 28, 29, 30, 32, 36, 39, 42, 46, 47, 50, 54, 58, 62, 63], "modul": [5, 21, 22, 28, 42, 43, 45, 46, 53, 54, 63, 65, 71], "drag": [5, 20, 21, 23, 28, 29, 32, 36, 37, 42, 45, 50, 59, 60, 63], "onto": [5, 17, 20, 21, 32, 42, 45, 67], 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"pass": [54, 65], "settl": [54, 65], "imped": [54, 65], "algorithm": [55, 58], "river": 56, "redi": 56, "databas": 56, "veri": 56, "background": 56, "setup": 56, "tabl": 56, "out": 56, "spectrum": 57, "spectrogram": 57, "packag": 58, "downstream": 58, "adjust": 58, "sort": 59, "drawn": 59, "waveform": 59, "space": 59, "boundari": 59, "pca": 59, "must": [59, 69], "have": 60, "upstream": 60, "splitter": 61, "independ": 61, "along": 61, "two": 61, "branch": 61, "understand": 62, "track": 63, "enabl": 63, "posit": 63, "roi": 63, "virtual": 64, "xdaq": 65, "advanc": 66, "ons": 66, "opeth": 66, "heartbeat": 66, "envelop": 66, "featur": 67, "downgrad": 67, "uninstal": 67, "store": [68, 70], "everyth": 68, "els": 68, "numpi": 68, "take": 68, "advantag": 68, "wide": 68, "standard": 68, "exist": 68, "futur": 68, "analysi": 68, "tool": 68, "text": 68, "nwb": 69, "replac": 69, "deprec": 69, "0": [69, 73], "sinc": 69, "avail": [69, 71], "download": 69, "redund": 70, "so": 70, "readili": 70, "recov": 70, "even": 70, "crash": 70, "howev": 70, "becaus": 70, "separ": 70, "doesn": 70, "t": 70, "scale": 70, "count": 70, "directori": 70, "identifi": 70, "get": 72, "what": 73, "version": 73, "fewer": 73, "consist": 73, "convent": 73, "http": 73, "server": 73}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.todo": 2, "sphinx": 57}, "alltitles": {"Common and external libraries": [[0, "common-and-external-libraries"]], "Common libraries": [[0, "common-libraries"]], "Modifying the source code": [[0, "modifying-the-source-code"]], "Using the common library in a plugin": [[0, "using-the-common-library-in-a-plugin"]], "External libraries": [[0, "external-libraries"]], "Header-only / Class Libraries": [[0, "header-only-class-libraries"]], "Shared / dynamic Libraries": [[0, "shared-dynamic-libraries"]], "Compiling plugins": [[1, "compiling-plugins"]], "Obtaining the source code": [[1, "obtaining-the-source-code"]], "Windows": [[1, "windows"], [2, "windows"], [21, "windows"], [21, "id3"], [23, "windows"]], "macOS": [[1, "macos"], [2, "macos"], [21, "macos"], [21, "id2"], [23, "macos"]], "Linux": [[1, "linux"], [2, "linux"], [21, "linux"], [21, "id1"], [23, "linux"]], "Compiling the GUI": [[2, "compiling-the-gui"]], "Creating a new plugin": [[3, "creating-a-new-plugin"]], "Creating a new plugin repository": [[3, "creating-a-new-plugin-repository"], [16, "creating-a-new-plugin-repository"], [17, "creating-a-new-plugin-repository"]], "Editing OpenEphysLib.cpp": [[3, "editing-openephyslib-cpp"]], "Processor and Visualizer Plugins": [[3, "processor-and-visualizer-plugins"]], "Data Thread Plugins": [[3, "data-thread-plugins"]], "Record Engine Plugins": [[3, "record-engine-plugins"]], "File Source Plugins": [[3, "file-source-plugins"]], "Adding source code": [[3, "adding-source-code"]], "Including external libraries": [[3, "including-external-libraries"]], "Compiling your plugin": [[3, "compiling-your-plugin"], [16, "compiling-your-plugin"], [17, "compiling-your-plugin"]], "Distributing plugins": [[4, "distributing-plugins"]], "Setting up the plugin repository": [[4, "setting-up-the-plugin-repository"]], "Setting up the Artifactory repository": [[4, "setting-up-the-artifactory-repository"]], "Properties for Artifactory repository": [[4, "id1"]], "Configuring external dependencies (if any)": [[4, "configuring-external-dependencies-if-any"]], "Releasing the plugin": [[4, "releasing-the-plugin"]], "Modifying the host application": [[5, "modifying-the-host-application"]], "Recommended workflow": [[5, "recommended-workflow"]], "Code organization": [[5, "code-organization"]], "Program structure": [[5, "program-structure"]], "Core application classes": [[5, "core-application-classes"]], "User interface classes": [[5, "user-interface-classes"]], "The processor graph": [[5, "the-processor-graph"]], "Data Threads": [[6, "data-threads"]], "Data Threads bring data into the signal chain from external hardware.": [[6, "id1"]], "File Sources": [[7, "file-sources"], [67, "file-sources"]], "File Sources stream pre-recorded continuous data and events into the File Reader.": [[7, "id1"]], "Processor Plugins": [[8, "processor-plugins"], [67, "processor-plugins"]], "Processor plugins are the key elements of the GUI\u2019s signal chain; they respond to and update continuous data, spikes, and events inside their process() method.": [[8, "id1"]], "Overview": [[8, "overview"], [10, "overview"], [11, "overview"], [25, "overview"]], "Key methods": [[8, "key-methods"]], "Constructors": [[8, "constructors"]], "GenericProcessor constructor": [[8, "genericprocessor-constructor"]], "GenericEditor constructor": [[8, "genericeditor-constructor"]], "Updating plugin settings": [[8, "updating-plugin-settings"]], "Starting/stopping acquisition": [[8, "starting-stopping-acquisition"]], "Processing data": [[8, "processing-data"]], "Continuous data": [[8, "continuous-data"], [66, "continuous-data"]], "Spike and event data": [[8, "spike-and-event-data"]], "Sending and receiving messages": [[8, "sending-and-receiving-messages"]], "Plugin parameters": [[8, "plugin-parameters"]], "Defining parameters": [[8, "defining-parameters"]], "Accessing parameters": [[8, "accessing-parameters"]], "Creating parameter editors": [[8, "creating-parameter-editors"]], "Responding to parameter value changes": [[8, "responding-to-parameter-value-changes"], [16, "responding-to-parameter-value-changes"], [17, "responding-to-parameter-value-changes"]], "Saving and loading custom parameters": [[8, "saving-and-loading-custom-parameters"]], "Record Engines": [[9, "record-engines"], [67, "record-engines"]], "Record Engines define how continuous data, events, and spikes are written to disk.": [[9, "id1"]], "NPY Files": [[9, "npy-files"]], "Sequential Block Files": [[9, "sequential-block-files"]], "Visualizer Plugins": [[10, "visualizer-plugins"]], "Visualizers are Processor Plugins that include a canvas for displaying data.": [[10, "id1"]], "Visualizer Editor methods": [[10, "visualizer-editor-methods"]], "Visualizer methods": [[10, "visualizer-methods"]], "Saving/loading settings": [[10, "saving-loading-settings"]], "Interactive Plots": [[10, "interactive-plots"]], "Open Ephys Plugin API": [[11, "open-ephys-plugin-api"]], "Logging": [[11, "logging"]], "Core Services": [[11, "core-services"]], "Developer Guide": [[12, "developer-guide"]], "Reporting bugs": [[12, "reporting-bugs"]], "Building a new plugin": [[12, "building-a-new-plugin"]], "Updating the host application": [[12, "updating-the-host-application"]], "Other projects": [[12, "other-projects"]], "FAQs": [[13, "faqs"]], "Measuring Closed-Loop Latency": [[14, "measuring-closed-loop-latency"]], "Required hardware": [[14, "required-hardware"]], "Configuring the Arduinos": [[14, "configuring-the-arduinos"]], "Connecting the devices": [[14, "connecting-the-devices"]], "Building the signal chain": [[14, "building-the-signal-chain"]], "Measuring system latency": [[14, "measuring-system-latency"]], "Settings that affect latency": [[14, "settings-that-affect-latency"]], "Next steps": [[14, "next-steps"], [16, "next-steps"]], "Synchronizing Data Streams": [[15, "synchronizing-data-streams"]], "General principles of synchronization": [[15, "general-principles-of-synchronization"]], "Hardware Configuration": [[15, "hardware-configuration"]], "Software Configuration": [[15, "software-configuration"]], "Monitoring and Recording": [[15, "monitoring-and-recording"]], "Loading and Processing": [[15, "loading-and-processing"]], "Questions?": [[15, "questions"]], "How To Make Your Own Plugin": [[16, "how-to-make-your-own-plugin"]], "Editing OpenEphysLib.cpp and other files": [[16, "editing-openephyslib-cpp-and-other-files"], [17, "editing-openephyslib-cpp-and-other-files"]], "Setting up the Processor methods": [[16, "setting-up-the-processor-methods"], [17, "setting-up-the-processor-methods"]], "Adding UI components to the editor": [[16, "adding-ui-components-to-the-editor"], [17, "adding-ui-components-to-the-editor"]], "Creating a slider parameter editor": [[16, "creating-a-slider-parameter-editor"]], "Creating a ComboBox parameter editor": [[16, "creating-a-combobox-parameter-editor"]], "Creating a custom parameter editor (optional)": [[16, "creating-a-custom-parameter-editor-optional"]], "Making Your Own Visualizer Plugin": [[17, "making-your-own-visualizer-plugin"]], "Creating a Combo Box": [[17, "creating-a-combo-box"]], "Populating the Combo Box": [[17, "populating-the-combo-box"]], "Defining plugin parameters": [[17, "defining-plugin-parameters"]], "Creating the Visualizer": [[17, "creating-the-visualizer"]], "Updating Canvas parameters": [[17, "updating-canvas-parameters"]], "Pushing spikes to the canvas": [[17, "pushing-spikes-to-the-canvas"]], "Calculating the spike rate": [[17, "calculating-the-spike-rate"]], "Tutorials": [[18, "tutorials"]], "Before you begin": [[19, "before-you-begin"]], "About Open Ephys": [[19, "about-open-ephys"]], "The philosopy behind the GUI": [[19, "the-philosopy-behind-the-gui"]], "Strengths and weaknesses": [[19, "strengths-and-weaknesses"]], "Things to keep in mind": [[19, "things-to-keep-in-mind"]], "Building a signal chain": [[20, "building-a-signal-chain"]], "Default configurations": [[20, "default-configurations"], [73, "default-configurations"]], "Adding a data source": [[20, "adding-a-data-source"]], "Adding a Record Node": [[20, "adding-a-record-node"]], "Visualizing continuous signals": [[20, "visualizing-continuous-signals"]], "Acquiring data": [[20, "acquiring-data"]], "Detecting spikes": [[20, "detecting-spikes"]], "Visualizing spikes": [[20, "visualizing-spikes"]], "Recording and listening to spikes": [[20, "recording-and-listening-to-spikes"]], "Exploring the user interface": [[21, "exploring-the-user-interface"]], "Main components": [[21, "main-components"]], "1. Processor List": [[21, "processor-list"]], "2. Signal Chain": [[21, "signal-chain"]], "3. Message Center": [[21, "message-center"]], "4. Control Panel": [[21, "control-panel"]], "5. Global Recording Options": [[21, "global-recording-options"]], "6. Viewport": [[21, "viewport"]], "Menu items": [[21, "menu-items"]], "File": [[21, "file"]], "Edit": [[21, "edit"]], "View": [[21, "view"]], "Help": [[21, "help"]], "Debug console": [[21, "debug-console"]], "Log files": [[21, "log-files"]], "Hardware requirements": [[22, "hardware-requirements"], [45, "hardware-requirements"]], "For the Open Ephys acquisition board": [[22, "for-the-open-ephys-acquisition-board"]], "Computer specs": [[22, "computer-specs"], [22, "id1"]], "Other hardware": [[22, "other-hardware"], [22, "id2"]], "For Neuropixels probes": [[22, "for-neuropixels-probes"]], "Installing the GUI": [[23, "installing-the-gui"]], "Via installer (recommended)": [[23, "via-installer-recommended"]], "Via .zip file": [[23, "via-zip-file"], [23, "id1"]], "Via installer (Ubuntu only)": [[23, "via-installer-ubuntu-only"]], "Via Portage (Gentoo only)": [[23, "via-portage-gentoo-only"]], "Via .zip file (all distros)": [[23, "via-zip-file-all-distros"]], "Via DMG (recommended)": [[23, "via-dmg-recommended"]], "Arduino Output": [[24, "arduino-output"]], "Allows events from within the GUI to control the state of digital output pins on an Arduino running Firmata. Provides a quick and easy way to translate information from software to hardware.": [[24, "id1"]], "Compatible devices": [[24, "compatible-devices"]], "Configuring your Arduino": [[24, "configuring-your-arduino"]], "Plugin configuration": [[24, "plugin-configuration"], [25, "plugin-configuration"], [26, "plugin-configuration"], [27, "plugin-configuration"], [28, "plugin-configuration"], [29, "plugin-configuration"], [31, "plugin-configuration"], [33, "plugin-configuration"], [34, "plugin-configuration"], [37, "plugin-configuration"], [39, "plugin-configuration"], [40, "plugin-configuration"], [43, "plugin-configuration"], [46, "plugin-configuration"], [47, "plugin-configuration"], [48, "plugin-configuration"], [49, "plugin-configuration"], [50, "plugin-configuration"], [51, "plugin-configuration"], [53, "plugin-configuration"], [54, "plugin-configuration"], [55, "plugin-configuration"], [56, "plugin-configuration"], [58, "plugin-configuration"], [59, "plugin-configuration"], [60, "plugin-configuration"], [61, "plugin-configuration"], [65, "plugin-configuration"]], "Audio Monitor": [[25, "audio-monitor"], [60, "audio-monitor"]], "Streams data from incoming continuous channels to the computer\u2019s audio output.": [[25, "id1"]], "Channel selection": [[25, "channel-selection"], [48, "channel-selection"]], "Output options": [[25, "output-options"]], "Working with multiple data streams": [[25, "working-with-multiple-data-streams"], [26, "working-with-multiple-data-streams"], [28, "working-with-multiple-data-streams"], [29, "working-with-multiple-data-streams"], [49, "working-with-multiple-data-streams"], [58, "working-with-multiple-data-streams"], [62, "working-with-multiple-data-streams"]], "Bandpass Filter": [[26, "bandpass-filter"]], "Filters incoming continuous data between the specified low cutoff and high cutoff frequencies (Hz) using a 2nd-order Butterworth filter (maximally flat frequency response in the passband).": [[26, "id1"]], "Filter parameters": [[26, "filter-parameters"]], "Selecting channels": [[26, "selecting-channels"]], "Filter details": [[26, "filter-details"]], "CNN Ripple": [[27, "cnn-ripple"]], "Uses a 1D convolutional neural network to detect hippocampal ripple events across 8 channels simultaneously. This plugin has been tested with linear arrays, high-density silicon probes, and Neuropixels, and can be used for online or offline ripple detection.": [[27, "id1"]], "Installing and upgrading": [[27, "installing-and-upgrading"], [30, "installing-and-upgrading"], [31, "installing-and-upgrading"], [32, "installing-and-upgrading"], [33, "installing-and-upgrading"], [35, "installing-and-upgrading"], [38, "installing-and-upgrading"], [39, "installing-and-upgrading"], [41, "installing-and-upgrading"], [42, "installing-and-upgrading"], [43, "installing-and-upgrading"], [44, "installing-and-upgrading"], [45, "installing-and-upgrading"], [46, "installing-and-upgrading"], [47, "installing-and-upgrading"], [48, "installing-and-upgrading"], [50, "installing-and-upgrading"], [51, "installing-and-upgrading"], [52, "installing-and-upgrading"], [55, "installing-and-upgrading"], [56, "installing-and-upgrading"], [57, "installing-and-upgrading"], [59, "installing-and-upgrading"], [62, "installing-and-upgrading"], [63, "installing-and-upgrading"], [64, "installing-and-upgrading"], [66, "installing-and-upgrading"]], "More information": [[27, "more-information"], [55, "more-information"]], "Channel Map": [[28, "channel-map"]], "Used to reorder and remove channels within the signal chain.": [[28, "id1"]], "Reordering channels": [[28, "reordering-channels"]], "Removing channels": [[28, "removing-channels"]], "Saving and loading channel mappings": [[28, "saving-and-loading-channel-mappings"]], "Common Average Reference": [[29, "common-average-reference"]], "Used to create a reference from the average of multiple channels. Helpful for removing noise that\u2019s shared across electrodes.": [[29, "id1"]], "Crossing Detector": [[30, "crossing-detector"]], "Emits a TTL event when a continuous channel crosses a specified threshold level. Each Crossing Detector can only process one input channel at a time, but multiple detectors can be placed in series to trigger on as many channels as desired.": [[30, "id1"]], "Recommended signal chain": [[30, "recommended-signal-chain"], [34, "recommended-signal-chain"], [48, "recommended-signal-chain"], [49, "recommended-signal-chain"], [50, "recommended-signal-chain"], [55, "recommended-signal-chain"], [58, "recommended-signal-chain"], [60, "recommended-signal-chain"]], "Plugin Configuration": [[30, "plugin-configuration"], [32, "plugin-configuration"], [35, "plugin-configuration"], [38, "plugin-configuration"], [41, "plugin-configuration"], [57, "plugin-configuration"], [63, "plugin-configuration"], [64, "plugin-configuration"], [66, "plugin-configuration"]], "General settings": [[30, "general-settings"]], "Threshold level": [[30, "threshold-level"]], "Event criteria": [[30, "event-criteria"]], "Event duration": [[30, "event-duration"]], "Data Snapshot": [[31, "data-snapshot"]], "Converts a short segment of data into an image (time x channels). Such images are typically created offline to assess data quality, but this plugin makes it possible to generate them during an experiment.": [[31, "id1"]], "Plugin usage": [[31, "plugin-usage"], [44, "plugin-usage"], [47, "plugin-usage"]], "Ephys Socket": [[32, "ephys-socket"]], "Receives continuous data from the OpenCVMatSocket in Bonsai. This is intended to be a quick way to stream ephys data from Bonsai, for example if you\u2019re performing closed-loop feedback in Bonsai, but want to visualize your data in the Open Ephys GUI.": [[32, "id1"]], "In Bonsai": [[32, "in-bonsai"]], "In Open Ephys": [[32, "in-open-ephys"]], "Event Broadcaster": [[33, "event-broadcaster"]], "Sends events from the GUI to external applications using a ZeroMQ socket. Can be used to transmit \u201clightweight\u201d information about ongoing spikes/events; if the full continuous data is needed, the ZMQ Interface should be used instead.": [[33, "id1"]], "JSON Packet Format": [[33, "json-packet-format"]], "Spikes": [[33, "spikes"], [68, "spikes"], [69, "spikes"], [70, "spikes"]], "TTL Events": [[33, "ttl-events"], [43, "ttl-events"]], "Raw Binary Packet Format": [[33, "raw-binary-packet-format"]], "Receiving data in Python": [[33, "receiving-data-in-python"]], "Event Translator": [[34, "event-translator"]], "Copies events from one data stream to all other synchronized streams.": [[34, "id1"]], "Expected behavior": [[34, "expected-behavior"]], "Falcon Output": [[35, "falcon-output"]], "Streams continuous channels with low latency.": [[35, "id1"]], "Creating a custom client": [[35, "creating-a-custom-client"]], "Falcon Input": [[35, "falcon-input"]], "Latency Measurements": [[35, "latency-measurements"]], "File Reader": [[36, "file-reader"]], "Reads data from a local file.": [[36, "id1"]], "Loading Data": [[36, "loading-data"]], "File Scrubbing": [[36, "file-scrubbing"]], "Sample Data": [[36, "sample-data"]], "Other input data": [[36, "other-input-data"]], "LFP Viewer": [[37, "lfp-viewer"]], "\u201cLFP\u201d stands for \u201clocal field potential,\u201d but this visualizer can display any type of continuous signal. It\u2019s an essential plugin for monitoring overall data quality before and during an experiment. Each LFP Viewer can display up to 3 segments of data at a time, either side-by-side or stacked on top of one another.": [[37, "id1"]], "Layout selection": [[37, "layout-selection"]], "Main options": [[37, "main-options"]], "Additional options": [[37, "additional-options"]], "Thresholds": [[37, "thresholds"]], "Channels": [[37, "channels"]], "Signals": [[37, "signals"]], "Triggered display": [[37, "triggered-display"]], "Single-channel mode": [[37, "single-channel-mode"]], "LSL Inlet": [[38, "lsl-inlet"]], "Streams continuous data from devices that use the Lab Streaming Layer protocol. See the Lab Streaming Layer documentation for more information about this library and a list of supported devices.": [[38, "id1"]], "MATLAB Interface": [[39, "matlab-interface"]], "Streams one channel of continuous data from the Open Ephys GUI to a live Matlab session. A Matlab API allows seamless processing of the incoming data in real time.": [[39, "id1"]], "Matlab API": [[39, "matlab-api"]], "Merger": [[40, "merger"]], "Allows multiple signal chains to be combined into one.": [[40, "id2"]], "Recommended usage": [[40, "recommended-usage"], [61, "recommended-usage"]], "Multi-Band Integrator": [[41, "multi-band-integrator"]], "Mixes, weights, and applies a rolling average to bandwidths of interest on a single channel. This plugin can be used to trigger feedback based on neural oscillations.": [[41, "id1"]], "NI-DAQmx": [[42, "ni-daqmx"]], "Streams analog and digital data from National Instruments (NI) hardware. Use multiple instances of this plugin to acquire data from several PXI-, PCI-, and/or USB-based NI devices simultaneously. Can be used in tandem with the Neuropix-PXI plugin, to read in analog and digital inputs in parallel with Neuropixels data.": [[42, "id2"]], "Requirements": [[42, "requirements"]], "Compatible hardware": [[42, "compatible-hardware"]], "Connecting to your NIDAQ hardware": [[42, "connecting-to-your-nidaq-hardware"]], "Offline Synchronization": [[42, "offline-synchronization"]], "Online Synchronization": [[42, "online-synchronization"]], "NIDAQ Device Comparison": [[42, "nidaq-device-comparison"]], "PXI-6133": [[42, "pxi-6133"]], "PXIe-6341": [[42, "pxie-6341"]], "PXI-6521": [[42, "pxi-6521"]], "PCIe-6321": [[42, "pcie-6321"]], "USB-6001": [[42, "usb-6001"]], "Network Events": [[43, "network-events"]], "Adds TTL events via a network connection.": [[43, "id1"]], "Remote control commands": [[43, "remote-control-commands"]], "Other commands": [[43, "other-commands"]], "Example Code": [[43, "example-code"], [66, "example-code"]], "Matlab": [[43, "matlab"]], "Python": [[43, "python"]], "Neuropixels CAR": [[44, "neuropixels-car"]], "A common average reference optimized for use with Neuropixels probes.": [[44, "id1"]], "Neuropixels sampling pattern": [[44, "neuropixels-sampling-pattern"]], "Neuropixels PXI": [[45, "neuropixels-pxi"]], "Streams data from a PXI-based Neuropixels data acquisition system.": [[45, "id1"]], "Compatible probes": [[45, "compatible-probes"]], "Connecting to the PXI system": [[45, "connecting-to-the-pxi-system"]], "Troubleshooting connections": [[45, "troubleshooting-connections"]], "Calibrating probes": [[45, "calibrating-probes"]], "Configuring probe settings": [[45, "configuring-probe-settings"]], "Reference selection": [[45, "reference-selection"]], "Activity view": [[45, "activity-view"]], "Saving, loading, and copying settings": [[45, "saving-loading-and-copying-settings"]], "Default loading and saving": [[45, "default-loading-and-saving"]], "Copying settings between probes": [[45, "copying-settings-between-probes"]], "IMRO files": [[45, "imro-files"]], "ProbeInterface JSON files": [[45, "probeinterface-json-files"]], "Plugin data streams": [[45, "plugin-data-streams"]], "Customizing stream names": [[45, "customizing-stream-names"]], "Synchronization settings": [[45, "synchronization-settings"]], "Simulation mode": [[45, "simulation-mode"]], "Built-in self tests": [[45, "built-in-self-tests"], [45, "id2"]], "Headstage tests": [[45, "headstage-tests"]], "Updating basestation firmware": [[45, "updating-basestation-firmware"]], "Remote control": [[45, "remote-control"], [47, "remote-control"], [72, "remote-control"]], "OSC Events": [[46, "osc-events"]], "Converts Open Sound Control (OSC) messages into TTL events. This plugin was designed to provide a simple way to send information from Bonsai to the Open Ephys GUI, but it will work with any application that can send OSC messages.": [[46, "id1"]], "Bonsai configuration": [[46, "bonsai-configuration"]], "Online PSTH": [[47, "online-psth"]], "Aligns spike times to incoming TTL events in order to create a peri-stimulus time histogram displays for an unlimited number of conditions.": [[47, "id1"]], "Define the trigger conditions": [[47, "define-the-trigger-conditions"]], "Define the window size": [[47, "define-the-window-size"]], "Display options": [[47, "display-options"]], "Display type": [[47, "display-type"]], "Display layout": [[47, "display-layout"]], "Triggering methods": [[47, "triggering-methods"]], "Working with the Spike Sorter": [[47, "working-with-the-spike-sorter"]], "Phase Calculator": [[48, "phase-calculator"]], "Estimates the phase of a continuous input signal within a specified passband. It can be used to perform phase-specific closed-loop stimulation, typically in combination with the Crossing Detector.": [[48, "id1"]], "Defining the frequency band of interest": [[48, "defining-the-frequency-band-of-interest"]], "Visualization": [[48, "visualization"], [57, "visualization"]], "Phase Detector": [[49, "phase-detector"]], "Emits events when a continuous signal arrives at a specific \u201cphase,\u201d which really means a peak, falling zero-crossing, trough, or rising zero-crossing. It was originally designed to trigger output at specific phases of an 8 Hz theta oscillation in mouse hippocampus.": [[49, "id1"]], "Probe Viewer": [[50, "probe-viewer"]], "Visualizes the signal from a linear probe as a heatmap (time x channels). Can be configured to show RMS signal, spike rate, or power in different frequency bands.": [[50, "id1"]], "Render modes": [[50, "render-modes"]], "Anatomy overlay": [[50, "anatomy-overlay"]], "Via Pinpoint": [[50, "via-pinpoint"]], "Via config messages": [[50, "via-config-messages"]], "Pulse Pal": [[51, "pulse-pal"]], "Triggers the outputs of a Pulse Pal, an open-source pulse train generator developed and sold by Sanworks.": [[51, "id1"]], "Hardware Requirements": [[51, "hardware-requirements"]], "Trigger and gate channels": [[51, "trigger-and-gate-channels"]], "Pulse train settings": [[51, "pulse-train-settings"]], "Python Processor": [[52, "python-processor"]], "Modifies incoming continuous data and handles events and spikes using custom code written in Python.": [[52, "id1"]], "Setting up a Python environment": [[52, "setting-up-a-python-environment"]], "Setting the Python Interpreter Path": [[52, "setting-the-python-interpreter-path"]], "Creating & loading a Python Module": [[52, "creating-loading-a-python-module"]], "Limitations": [[52, "limitations"]], "Record Control": [[53, "record-control"]], "Allows recording to be automatically toggled on and off by TTL inputs, instead of manually pressing the record button. It can be used to trigger recording using external TTLs, or based on events that are detected in a continuous data stream.": [[53, "id1"]], "Trigger modes": [[53, "trigger-modes"]], "Rhythm Plugins": [[54, "rhythm-plugins"]], "Streams data from any device running Intan\u2019s \u201cRhythm\u201d firmware. It is currently compatible with both the Open Ephys acquisition board and the Intan RHD USB Interface Board. Support for additional Intan hardware is coming soon.": [[54, "id1"]], "Headstages": [[54, "headstages"], [65, "headstages"]], "Sample rate selection": [[54, "sample-rate-selection"], [65, "sample-rate-selection"]], "Bandwidth interface": [[54, "bandwidth-interface"], [65, "bandwidth-interface"]], "DSP button": [[54, "dsp-button"], [65, "dsp-button"]], "Audio output": [[54, "audio-output"], [65, "audio-output"]], "Noise slicer": [[54, "noise-slicer"], [65, "noise-slicer"]], "ADC selection": [[54, "adc-selection"], [65, "adc-selection"]], "DAC TTLs": [[54, "dac-ttls"], [65, "dac-ttls"]], "DAC High-pass filter": [[54, "dac-high-pass-filter"], [65, "dac-high-pass-filter"]], "TTL settle": [[54, "ttl-settle"], [65, "ttl-settle"]], "Impedance testing": [[54, "impedance-testing"], [65, "impedance-testing"]], "Ripple Detector": [[55, "ripple-detector"]], "Emits a TTL event when a hippocampal ripple is detected on one continuous channel.": [[55, "id1"]], "Ripple detection algorithm": [[55, "ripple-detection-algorithm"]], "River Output": [[56, "river-output"]], "Streams spikes and events to a Redis database with very low latency.": [[56, "id1"]], "Background": [[56, "background"]], "Database setup": [[56, "database-setup"]], "Creating a new table": [[56, "creating-a-new-table"]], "Reading data out": [[56, "reading-data-out"]], "Spectrum Viewer": [[57, "spectrum-viewer"]], "Displays the real-time power spectrum for up to 8 continuous channels.": [[57, "id1"]], "Power Spectrum": [[57, "power-spectrum"]], "Spectrogram": [[57, "spectrogram"]], "Spike Detector": [[58, "spike-detector"]], "Detects spikes in continuous data and packages them as events that can be read by downstream processors.": [[58, "id1"]], "Creating electrodes": [[58, "creating-electrodes"]], "Adjusting parameters": [[58, "adjusting-parameters"]], "Thresholding algorithms": [[58, "thresholding-algorithms"]], "Spike Sorter": [[59, "spike-sorter"]], "Sorts spikes based on manually drawn boxes in waveform space, or boundaries in PCA space. Must be used in combination with a plugin that generates spikes, such as the Spike Detector.": [[59, "id1"]], "Spike Viewer": [[60, "spike-viewer"]], "Displays spikes that have been detected by an upstream plugin.": [[60, "id1"]], "Changing electrode display size": [[60, "changing-electrode-display-size"]], "Splitter": [[61, "splitter"]], "Creates a copy of all incoming continuous channels, spikes, and events, allowing data to be processed independently along two branches of the signal chain.": [[61, "id2"]], "TTL Panels": [[62, "ttl-panels"]], ".": [[62, "id1"]], "Understanding TTL events": [[62, "understanding-ttl-events"]], "Plugin Usage": [[62, "plugin-usage"]], "TTL Toggle Panel": [[62, "ttl-toggle-panel"]], "TTL Display Panel": [[62, "ttl-display-panel"]], "Tracking Plugin": [[63, "tracking-plugin"]], "Enables closed-loop stimulation based on position information streamed from Bonsai.": [[63, "id1"]], "Setting up Bonsai": [[63, "setting-up-bonsai"]], "Tracking sources": [[63, "tracking-sources"]], "Creating ROIs": [[63, "creating-rois"]], "Virtual Reference": [[64, "virtual-reference"]], "Makes it possible to reference any combination of channels to any other.": [[64, "id1"]], "XDAQ": [[65, "xdaq"]], "Streams data from XDAQ Systems.": [[65, "id1"]], "ZMQ Interface": [[66, "zmq-interface"]], "Sends continuous data, events, and spikes to external applications using the ZeroMQ library, making it possible to create advanced visualization and monitoring add-ons, such as OPETH": [[66, "id1"]], "Using multiple plugins": [[66, "using-multiple-plugins"]], "Heartbeat messages": [[66, "heartbeat-messages"]], "Data Packets": [[66, "data-packets"]], "Message Envelope": [[66, "message-envelope"]], "Message Header": [[66, "message-header"]], "Event data": [[66, "event-data"]], "Spike data": [[66, "spike-data"]], "Message Data": [[66, "message-data"]], "Plugins": [[67, "plugins"]], "Types of Plugins": [[67, "types-of-plugins"]], "General Plugin Features": [[67, "general-plugin-features"]], "Plugin Installer": [[67, "plugin-installer"]], "Installing Plugins": [[67, "installing-plugins"]], "Upgrading / Downgrading": [[67, "upgrading-downgrading"]], "Uninstalling Plugins": [[67, "uninstalling-plugins"]], "Binary Format": [[68, "binary-format"]], "This is the default format for the Open Ephys GUI. Continuous data is stored in flat binary files, and everything else is in JSON / numpy format. Takes advantage of widely used open standards to maximize compatibility with existing and future analysis tools.": [[68, "id1"]], "File organization": [[68, "file-organization"], [69, "file-organization"], [70, "file-organization"]], "Format details": [[68, "format-details"], [69, "format-details"], [70, "format-details"]], "Continuous": [[68, "continuous"], [69, "continuous"], [70, "continuous"]], "Events": [[68, "events"], [69, "events"], [70, "events"]], "Text events": [[68, "text-events"]], "Reading data in Python": [[68, "reading-data-in-python"], [69, "reading-data-in-python"], [70, "reading-data-in-python"]], "Reading data in Matlab": [[68, "reading-data-in-matlab"], [69, "reading-data-in-matlab"], [70, "reading-data-in-matlab"]], "NWB Format": [[69, "nwb-format"]], "This is a data format based on the NWB 2.X specification. It replaces the deprecated NWB 1.0 format. Since it is not available by default, it must be downloaded via the GUI\u2019s Plugin Installer.": [[69, "id1"]], "Open Ephys Format": [[70, "open-ephys-format"]], "This is the original format used by the Open Ephys GUI. It is designed with redundancy in mind, so that data can be readily recovered even if the GUI crashes during acquisition. However, because data for each electrode is stored in a separate file, it doesn\u2019t scale to high channel count recordings. All files are stored in a single directory, with the file names used to identify the data source.": [[70, "id1"]], "Headers": [[70, "headers"]], "Recording data": [[71, "recording-data"]], "Global recording options": [[71, "global-recording-options"]], "Available data formats": [[71, "available-data-formats"]], "Using the Record Node": [[71, "using-the-record-node"]], "General Configuration": [[71, "general-configuration"]], "Recording Continuous Channels": [[71, "recording-continuous-channels"]], "Recording Events": [[71, "recording-events"]], "Recording Spikes": [[71, "recording-spikes"]], "Multiple Record Nodes": [[71, "multiple-record-nodes"]], "Synchronizer": [[71, "synchronizer"]], "Start/stop acquisition and recording": [[72, "start-stop-acquisition-and-recording"]], "Get/set recording configuration": [[72, "get-set-recording-configuration"]], "Get information about the signal chain": [[72, "get-information-about-the-signal-chain"]], "Send a configuration message to a specific processor": [[72, "send-a-configuration-message-to-a-specific-processor"]], "Broadcast a message to all processors": [[72, "broadcast-a-message-to-all-processors"]], "Close the GUI remotely": [[72, "close-the-gui-remotely"]], "What\u2019s new in version 0.6.x": [[73, "what-s-new-in-version-0-6-x"]], "Stream-based processing": [[73, "stream-based-processing"]], "Fewer built-in plugins": [[73, "fewer-built-in-plugins"]], "Audio Monitor plugin": [[73, "audio-monitor-plugin"]], "Event Translator plugin": [[73, "event-translator-plugin"]], "Consistent naming and numbering conventions": [[73, "consistent-naming-and-numbering-conventions"]], "Settings file format": [[73, "settings-file-format"]], "Built-in HTTP server": [[73, "built-in-http-server"]], "User Manual": [[74, "user-manual"]]}, "indexentries": {"broadcastmessage (c++ function)": [[6, "_CPPv416broadcastMessage6String"], [8, "_CPPv416broadcastMessage6String"]], "createeditor (c++ function)": [[6, 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"coreservices::saverecoveryconfig (c++ function)": [[11, "_CPPv4N12CoreServices18saveRecoveryConfigEv"]], "coreservices::setacquisitionstatus (c++ function)": [[11, "_CPPv4N12CoreServices20setAcquisitionStatusEb"]], "coreservices::setrecordingdirectoryappendtext (c++ function)": [[11, "_CPPv4N12CoreServices31setRecordingDirectoryAppendTextE6String"]], "coreservices::setrecordingdirectorybasename (c++ function)": [[11, "_CPPv4N12CoreServices29setRecordingDirectoryBasenameE6String"]], "coreservices::setrecordingdirectoryprependtext (c++ function)": [[11, "_CPPv4N12CoreServices32setRecordingDirectoryPrependTextE6String"]], "coreservices::setrecordingparentdirectory (c++ function)": [[11, "_CPPv4N12CoreServices27setRecordingParentDirectoryE6String"]], "coreservices::setrecordingstatus (c++ function)": [[11, "_CPPv4N12CoreServices18setRecordingStatusEb"]], "coreservices::updatesignalchain (c++ function)": [[11, "_CPPv4N12CoreServices17updateSignalChainEP13GenericEditor"]], "__init__()": [[52, "init__"]], "add_python_event()": [[52, "add_python_event"]], "built-in function": [[52, "add_python_event"], [52, "handle_spike"], [52, "handle_ttl_event"], [52, "init__"], [52, "process"], [52, "start_acquisition"], [52, "start_recording"], [52, "stop_acquisition"], [52, "stop_recording"]], "handle_spike()": [[52, "handle_spike"]], "handle_ttl_event()": [[52, "handle_ttl_event"]], "process()": [[52, "process"]], "start_acquisition()": [[52, "start_acquisition"]], "start_recording()": [[52, "start_recording"]], "stop_acquisition()": [[52, "stop_acquisition"]], "stop_recording()": [[52, "stop_recording"]]}})
\ No newline at end of file
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"tell": [0, 16], "end": [0, 3, 5, 6, 14, 15, 16, 17, 25, 30, 32, 36, 39, 42, 50, 71, 73], "cmake_library_architectur": 0, "destin": 0, "gui_bin_dir": 0, "env": [0, 52], "home": [0, 21, 52], "api8": [0, 21], "automat": [0, 2, 3, 5, 6, 8, 10, 11, 14, 15, 16, 17, 20, 21, 23, 25, 36, 39, 40, 42, 44, 45, 47, 48, 50, 54, 56, 58, 60, 65, 66, 67, 68, 69, 70, 71, 73], "correct": [0, 8, 14, 16, 30, 45, 48, 50, 53, 57, 58], "whether": [1, 5, 6, 10, 15, 19, 21, 22, 36, 45, 62, 71], "re": [1, 2, 3, 5, 8, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 25, 37, 40, 42, 45, 49, 50, 51, 58, 59, 71, 72, 73, 74, 75], "across": [1, 4, 7, 8, 15, 19, 30, 31, 36, 37, 42, 44, 45, 50, 54, 57, 58, 59, 60, 65, 66, 71, 73], "three": [1, 5, 6, 8, 9, 10, 19, 20, 24, 29, 30, 37, 41, 51, 58, 60, 63, 66, 73], "note": [1, 2, 6, 8, 10, 11, 14, 15, 16, 17, 20, 45, 47, 48, 50, 59, 68, 71, 72], "see": [1, 3, 6, 8, 9, 11, 13, 14, 16, 17, 19, 20, 21, 22, 23, 31, 32, 33, 35, 39, 41, 42, 45, 47, 49, 50, 54, 56, 58, 66, 67, 71, 73], "don": [1, 3, 10, 12, 13, 19, 20, 21, 37, 71], "work": [1, 2, 6, 12, 13, 14, 15, 17, 19, 20, 22, 23, 24, 27, 32, 34, 36, 44, 45, 48, 50, 51, 54, 55, 65, 67, 69, 71, 72, 75], "equal": [1, 15, 16, 17, 22, 23, 37, 63, 75], "mac": [1, 2, 3, 23, 24], "librari": [1, 5, 14, 15, 17, 19, 21, 35, 50, 52, 56, 68, 69, 70, 71, 72], "onli": [1, 5, 6, 7, 8, 9, 11, 15, 16, 17, 19, 20, 21, 24, 25, 26, 29, 31, 34, 36, 37, 38, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 67, 71, 72, 73, 75], "certain": [1, 11, 16, 45, 48, 54, 65, 72, 75], "Be": [1, 8, 17, 19, 55, 58], "check": [1, 8, 11, 13, 14, 15, 16, 20, 21, 25, 26, 42, 45, 53, 67, 74], "relev": [1, 3, 5, 7, 9, 10, 16, 17, 40, 49, 53, 68], "document": [1, 3, 4, 6, 11, 12, 16, 21, 23, 35, 54, 58, 59, 63, 65, 69, 71, 72, 74, 75], "compat": [1, 9, 13, 19, 22, 32, 36, 63, 67, 69, 70, 71, 74], "main": [1, 2, 3, 5, 10, 11, 12, 15, 16, 17, 19, 23, 34, 42, 43, 45, 59, 64, 67, 68, 71], "download": [1, 2, 4, 15, 19, 20, 23, 24, 42, 45, 63, 67], "plan": [1, 5, 12, 22, 23, 45, 50, 56, 67], "own": [1, 2, 3, 4, 5, 6, 8, 13, 15, 18, 19, 20, 34, 39, 42, 45, 48, 52, 59, 60, 67, 68, 71, 73, 74], "fork": [1, 2, 4, 5, 67], "via": [1, 2, 3, 5, 6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 19, 21, 24, 25, 45, 46, 47, 51, 52, 63, 66, 67, 71, 72, 73], "origin": [1, 5, 15, 19, 20, 33, 35, 41, 42, 48, 58, 60, 62, 71], "zip": [1, 4], "offici": [1, 2, 12, 13, 19, 67], "level": [1, 2, 5, 12, 13, 14, 15, 19, 21, 29, 45, 55, 69], "befor": [1, 2, 6, 8, 12, 16, 17, 23, 24, 27, 30, 32, 38, 39, 41, 42, 45, 49, 51, 52, 55, 57, 58, 64, 67, 68, 71], "attempt": [1, 7, 14, 21], "1": [1, 3, 6, 8, 9, 10, 14, 15, 16, 17, 20, 22, 24, 26, 27, 28, 29, 33, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 56, 58, 62, 64, 65, 66, 70, 71, 72, 73], "2": [1, 14, 15, 16, 22, 24, 26, 33, 35, 37, 38, 41, 42, 44, 45, 46, 47, 54, 57, 58, 65, 66, 70, 71], "gener": [1, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 16, 17, 19, 20, 21, 22, 23, 24, 32, 34, 35, 39, 42, 44, 45, 47, 48, 49, 52, 55, 58, 62, 63, 66, 72, 73], "visual": [1, 2, 5, 8, 11, 12, 14, 16, 18, 19, 21, 23, 25, 30, 31, 35, 40, 45, 47, 51, 52, 56, 59, 60, 63, 64, 73, 74], "studio": [1, 2, 12, 23], "2022": [1, 2, 23, 27, 55, 73], "project": [1, 2, 13, 71], "prompt": [1, 2, 23, 52], "insid": [1, 2, 3, 4, 5, 6, 9, 10, 11, 14, 16, 17, 21, 28, 36, 52, 59, 64, 67, 69, 71], "top": [1, 2, 4, 5, 8, 17, 21, 25, 28, 36, 42, 45, 47, 50, 54, 55, 65, 67, 71], "cd": [1, 2], "g": [1, 2, 3, 6, 8, 10, 11, 14, 15, 21, 22, 25, 32, 37, 40, 42, 45, 48, 49, 50, 58, 59, 63, 67, 70, 71, 72, 73], "17": [1, 2], "A": [1, 2, 6, 7, 8, 9, 10, 11, 15, 17, 21, 22, 27, 32, 35, 36, 38, 40, 42, 45, 50, 51, 52, 54, 55, 57, 58, 61, 63, 65, 66, 67, 68, 71], "x64": [1, 2], "earlier": [1, 2, 45, 61], "substitut": [1, 2, 14, 20, 72], "last": [1, 2, 5, 15, 17, 21, 42, 45, 50, 67], "16": [1, 2, 6, 7, 20, 22, 26, 36, 42, 44, 47, 49, 54, 65, 68, 69, 70, 72], "2019": [1, 2, 19, 23], "15": [1, 2, 17, 26, 45, 49], "2017": [1, 2, 19, 23], "win64": [1, 2], "14": [1, 2], "2015": [1, 2, 23], "12": [1, 2, 15, 16, 26, 44, 54], "2013": [1, 2], "next": [1, 2, 5, 6, 7, 8, 11, 13, 17, 21, 24, 31, 45, 48, 53, 62, 67, 71, 72], "launch": [1, 2, 14, 17, 20, 21, 23, 45, 67, 72, 73], "oe_plugin_": 1, "sln": [1, 2], "wa": [1, 2, 6, 8, 9, 10, 16, 19, 20, 21, 31, 35, 41, 45, 52, 58, 59, 60, 62, 67, 68, 71, 72, 73, 74, 75], "select": [1, 2, 3, 4, 5, 7, 14, 15, 16, 17, 20, 21, 24, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 40, 42, 47, 49, 50, 51, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 71, 73], "configur": [1, 6, 7, 8, 11, 16, 17, 19, 21, 22, 42, 67], "debug": [1, 2, 11, 16, 62, 67], "releas": [1, 2, 5, 11, 13, 16, 19, 23, 45, 67, 73], "solut": [1, 2, 19, 42, 44], "all_build": [1, 2], "That": [1, 4, 19, 42, 51, 61], "process": [1, 3, 5, 6, 7, 9, 11, 13, 14, 16, 17, 19, 21, 22, 25, 26, 35, 37, 40, 45, 48, 49, 52, 55, 56, 58, 66, 67, 71, 74], "except": [1, 20, 34, 42, 61, 71], "thu": [1, 65], "trigger": [1, 8, 11, 12, 13, 14, 16, 21, 35, 36, 43, 46, 54, 55, 62, 63, 65, 72, 73], "procedur": [1, 15], "xcode": [1, 2, 12], "final": [1, 2, 9, 14, 16, 17, 20, 21, 45, 52, 55], "period": [1, 2, 55, 66], "critic": [1, 2, 3, 16, 17, 21, 22, 45], "get": [1, 2, 4, 8, 12, 13, 16, 17, 19, 21, 22, 42, 43, 73, 75], "xcodeproj": [1, 2], "live": [1, 2, 3, 5, 10, 21, 35, 45, 75], "scheme": [1, 2, 4, 37, 45, 70, 71], "silicon": [1, 2, 22, 50], "ll": [1, 2, 3, 4, 8, 12, 13, 15, 16, 17, 19, 20, 21, 22, 24, 32, 42, 43, 45, 63, 67], "profil": [1, 2, 22], "us": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 30, 31, 32, 34, 35, 36, 37, 39, 43, 45, 46, 47, 49, 50, 51, 54, 55, 56, 57, 58, 60, 61, 62, 63, 64, 65, 69, 72, 73, 74], "rosetta": [1, 2], "target": [1, 2], "my": [1, 2, 13], "appear": [1, 2, 8, 10, 13, 14, 16, 17, 20, 21, 24, 36, 37, 42, 45, 54, 60, 65, 67, 70], "nativ": [1, 2, 56], "few": [1, 2, 13, 15, 17, 19, 24, 42, 45, 48, 49, 56, 57, 59], "involv": [1, 2, 14, 16, 17, 22, 61, 70], "won": [1, 2, 13, 14, 16, 17, 19, 20, 21, 32, 47, 67, 71], "interest": [1, 2, 4, 12, 13, 17, 45, 49, 58, 62, 63, 74], "pleas": [1, 2, 4, 12, 13, 15, 16, 17, 18, 19, 24, 36, 42, 45, 48, 54, 57, 59, 65, 67, 74], "reach": [1, 2, 14, 15, 19, 36, 37, 41, 42, 49], "out": [1, 2, 3, 8, 12, 13, 14, 15, 17, 19, 20, 21, 23, 30, 32, 37, 42, 44, 45, 52, 54, 55, 58, 65, 67, 71, 72, 74, 75], "org": [1, 2, 12, 13, 15, 18, 36, 45], "info": [1, 2, 3, 6, 7, 8, 11, 12, 13, 16, 17, 21, 33, 45, 50, 67], "default": [1, 3, 5, 6, 7, 8, 9, 11, 14, 15, 16, 17, 21, 27, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 55, 56, 57, 58, 59, 60, 62, 63, 64, 66, 67, 71, 72], "mode": [1, 2, 10, 11, 16, 20, 33, 54, 55, 57, 63, 64, 67, 72, 73], "modifi": [1, 3, 8, 10, 11, 12, 16, 17, 19, 20, 21, 31, 33, 45, 46, 47, 59, 67, 71, 72], "instead": [1, 2, 3, 6, 8, 10, 11, 19, 40, 52, 56, 59, 60, 62, 64, 67, 71, 73], "makefil": [1, 2, 12], "enter": [1, 2, 4, 23, 37, 47, 52, 56, 63], "unix": [1, 2], "dcmake_build_typ": [1, 2], "variabl": [1, 2, 8, 11, 16, 17, 39, 52], "d": [1, 2, 5, 12, 13, 14, 17, 19, 22, 23, 54], "argument": [1, 2, 8, 11, 26], "perman": [1, 2], "valu": [1, 2, 4, 6, 7, 9, 10, 11, 14, 15, 20, 21, 24, 26, 30, 36, 37, 38, 41, 42, 46, 48, 54, 55, 58, 60, 63, 65, 66, 68, 69, 70, 72, 73], "even": [1, 2, 8, 13, 15, 42, 55, 71], "therebi": [1, 2], "overwrit": [1, 2, 8, 48], "unset": [1, 2], "uvari": [1, 2], "finish": [1, 2, 16, 17, 45], "addit": [1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 15, 17, 18, 20, 21, 22, 30, 39, 42, 45, 48, 59, 61, 62, 64, 65, 66, 67, 68, 73], "sourc": [2, 4, 5, 6, 8, 11, 12, 13, 14, 15, 16, 17, 19, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 64, 65, 66, 68, 69, 71, 73, 74, 75], "code": [2, 6, 7, 8, 9, 11, 12, 14, 16, 17, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 68, 69, 70, 73, 74], "free": [2, 19, 71], "commun": [2, 4, 5, 6, 8, 12, 13, 14, 19, 21, 23, 24, 32, 45, 46, 67], "edit": [2, 5, 14, 45, 47, 48, 58, 62, 63, 66], "fine": [2, 22, 45, 46, 67, 71], "vs2013": 2, "system": [2, 12, 19, 21, 22, 23, 25, 32, 35, 52, 63, 75], "current": [2, 5, 6, 8, 9, 10, 11, 13, 16, 17, 19, 20, 21, 23, 25, 28, 31, 32, 36, 37, 43, 45, 49, 50, 52, 56, 58, 59, 60, 61, 62, 63, 67, 68, 69, 71, 72, 73, 74], "tool": [2, 13, 14, 19, 33, 45, 59, 69, 70, 71], "plugin": [2, 5, 6, 7, 9, 13, 14, 15, 18, 19, 20, 21, 22, 23, 36, 52, 68, 70, 71, 72, 74, 75], "shortcut": [2, 67], "kei": [2, 4, 5, 14, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 74], "f6": 2, "press": [2, 11, 14, 15, 16, 19, 20, 21, 31, 38, 39, 42, 45, 47, 50, 51, 54, 58, 59, 62, 63, 65, 67, 71], "In": [2, 5, 6, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 22, 24, 26, 35, 36, 37, 39, 42, 43, 45, 49, 50, 54, 57, 58, 59, 60, 61, 62, 65, 66, 70, 71, 73], "explor": [2, 45, 71, 74], "right": [2, 4, 5, 10, 12, 13, 14, 15, 16, 17, 19, 20, 21, 25, 26, 28, 29, 30, 36, 37, 40, 42, 45, 47, 49, 50, 51, 54, 56, 58, 59, 60, 61, 62, 64, 71], "startup": [2, 21, 45], "debugg": 2, "store": [2, 5, 7, 8, 9, 10, 11, 13, 17, 19, 21, 22, 26, 36, 43, 45, 52, 69, 71, 72, 73], "termin": [2, 6, 14, 15, 21, 23, 35, 42, 52, 61, 70], "o": [2, 5, 14, 16, 17, 22, 24, 45, 54, 65], "10": [2, 14, 15, 16, 17, 22, 27, 35, 36, 45, 49, 52, 55, 70], "7": [2, 22, 41, 45, 58, 70], "later": [2, 8, 10, 17, 20, 46, 58], "sudo": [2, 23], "content": [2, 8, 21, 73], "readi": [2, 4, 8, 16, 42, 45, 52, 55], "hit": [2, 14, 21], "drop": [2, 5, 16, 17, 20, 21, 23, 24, 25, 32, 35, 36, 40, 42, 45, 48, 50, 52, 53, 54, 55, 56, 57, 59, 61, 65, 67], "down": [2, 15, 16, 17, 20, 24, 25, 35, 36, 42, 45, 48, 50, 54, 55, 57, 59, 62, 65, 67, 71, 72], "menu": [2, 14, 15, 16, 17, 20, 24, 25, 35, 36, 37, 40, 42, 45, 48, 49, 50, 54, 55, 57, 58, 59, 62, 63, 65, 67, 72, 73], "stop": [2, 5, 6, 9, 10, 11, 14, 15, 17, 20, 21, 27, 36, 37, 42, 43, 52, 53, 58, 68, 69, 71, 73], "ubuntu": 2, "debian": [2, 23], "distribut": [2, 7, 14, 19, 30, 67, 71], "apt": 2, "updat": [2, 3, 4, 5, 7, 10, 11, 15, 16, 20, 32, 36, 37, 38, 47, 50, 52, 57, 62, 67, 68, 71, 72, 73], "resourc": [2, 5, 13, 16, 17, 20, 36, 43, 66, 73], "install_linux_depend": 2, "sh": 2, "acquisit": [2, 3, 5, 6, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 32, 34, 36, 37, 38, 39, 42, 43, 47, 48, 50, 52, 53, 57, 58, 59, 62, 65, 66, 67, 68, 69, 71, 73, 74], "board": [2, 13, 14, 20, 21, 23, 24, 32, 42, 45, 65, 71, 72, 73, 74], "cp": [2, 23], "40": [2, 14, 17, 23, 36], "rule": [2, 23], "etc": [2, 11, 23, 45, 51, 54, 67, 71], "udev": [2, 23], "servic": [2, 23], "restart": [2, 23, 33, 45], "fedora": [2, 23], "cento": [2, 23], "distro": [2, 22], "udevadm": [2, 23], "conrol": 2, "reload": [2, 21, 23, 45, 52], "success": [2, 7, 24, 25, 49, 67], "binari": [2, 3, 5, 7, 9, 15, 20, 36, 45, 67, 71, 72, 73], "primari": [3, 11, 16, 43, 62, 67], "mean": [3, 13, 15, 19, 36, 37, 42, 50, 52, 55, 62, 70, 71], "extend": [3, 6, 11, 12, 16, 17, 19, 37, 39, 75], "hardwar": [3, 5, 8, 11, 13, 19, 20, 21, 34, 48, 62, 65, 71, 73], "incom": [3, 5, 6, 7, 8, 9, 11, 14, 16, 17, 20, 28, 30, 31, 33, 34, 35, 37, 40, 42, 45, 46, 48, 49, 51, 53, 55, 57, 59, 60, 62, 63, 64, 66, 67, 71], "real": [3, 5, 7, 9, 10, 14, 15, 17, 19, 35, 38, 41, 44, 52, 54, 65, 67, 71], "displai": [3, 5, 8, 11, 12, 14, 17, 20, 21, 25, 31, 40, 44, 45, 50, 55, 64, 65, 67, 71, 72, 73], "output": [3, 5, 8, 11, 14, 15, 16, 21, 27, 30, 32, 40, 41, 42, 43, 45, 48, 55, 61, 63, 67, 72], "read": [3, 6, 7, 8, 9, 12, 14, 15, 19, 20, 21, 22, 23, 35, 45, 52, 55, 62, 67, 71, 73, 75], "still": [3, 14, 15, 20, 42, 45, 52, 73], "datathread": [3, 6], "multi": [3, 14, 30, 33, 59, 66, 67], "band": [3, 14, 15, 26, 30, 42, 45, 55, 67], "integr": [3, 14, 19, 30, 45, 50, 67], "probe": [3, 15, 20, 26, 31, 35, 37, 42, 58, 64, 67, 71, 72, 73, 74], "show": [3, 5, 10, 14, 17, 20, 21, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 48, 55, 57, 59, 63, 66, 67], "inform": [3, 4, 5, 6, 7, 8, 9, 10, 11, 15, 16, 17, 20, 21, 35, 37, 40, 42, 44, 45, 50, 52, 56, 66, 67, 68, 69, 70, 71, 73, 74, 75], "about": [3, 5, 6, 7, 8, 9, 11, 12, 13, 14, 16, 17, 20, 21, 22, 23, 31, 42, 44, 45, 49, 50, 63, 66, 67, 68, 70, 71, 73, 74], "doesn": [3, 5, 8, 15, 16, 17, 19, 22, 32, 54, 65], "word": [3, 62, 66, 68, 73], "code_directori": [3, 16, 17], "newplugin": 3, "prefer": [3, 11, 13, 16, 17, 73], "text": [3, 8, 9, 10, 11, 16, 17, 21, 26, 35, 43, 45, 50, 54, 58, 62, 65, 67, 69, 70, 72, 73], "editor": [3, 5, 6, 11, 14, 15, 20, 21, 25, 27, 28, 29, 30, 31, 35, 36, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 71, 73], "implement": [3, 6, 7, 8, 9, 10, 15, 16, 17, 19, 29, 32, 33, 72, 73], "method": [3, 6, 7, 9, 11, 19, 39, 48, 58, 68, 70, 72], "genericprocessor": [3, 5, 6, 10, 11, 16, 17, 39], "repeatedli": [3, 8], "loop": [3, 16, 17, 18, 19, 21, 22, 35, 49, 51, 55], "ha": [3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 26, 28, 34, 35, 37, 39, 40, 42, 45, 47, 49, 52, 54, 55, 56, 58, 60, 61, 62, 65, 66, 67, 68, 71, 72, 73, 75], "chanc": 3, "respond": [3, 6, 14, 15, 43, 51, 53, 62, 72], "canva": [3, 8, 16], "one": [3, 5, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 29, 31, 32, 35, 36, 41, 42, 43, 45, 46, 47, 48, 49, 50, 52, 53, 54, 58, 60, 61, 62, 63, 64, 65, 66, 67, 70, 71, 72, 73], "processorpluginlibrari": 3, "whenev": [3, 5, 8, 9, 10, 11, 16, 17, 19, 20, 30, 35, 37, 40, 43, 45, 53, 58, 63, 67, 71], "libvers": [3, 16, 17], "0": [3, 6, 7, 8, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 26, 27, 28, 29, 33, 35, 36, 37, 41, 42, 43, 44, 45, 46, 47, 49, 50, 51, 52, 56, 57, 58, 59, 60, 63, 66, 68, 70, 71, 72], "filter": 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interface classes": [[5, "user-interface-classes"]], "The processor graph": [[5, "the-processor-graph"]], "Data Threads": [[6, "data-threads"]], "Data Threads bring data into the signal chain from external hardware.": [[6, "id1"]], "File Sources": [[7, "file-sources"], [67, "file-sources"]], "File Sources stream pre-recorded continuous data and events into the File Reader.": [[7, "id1"]], "Processor Plugins": [[8, "processor-plugins"], [67, "processor-plugins"]], "Processor plugins are the key elements of the GUI\u2019s signal chain; they respond to and update continuous data, spikes, and events inside their process() method.": [[8, "id1"]], "Overview": [[8, "overview"], [10, "overview"], [11, "overview"], [25, "overview"]], "Key methods": [[8, "key-methods"]], "Constructors": [[8, "constructors"]], "GenericProcessor constructor": [[8, "genericprocessor-constructor"]], "GenericEditor constructor": [[8, "genericeditor-constructor"]], "Updating plugin settings": [[8, "updating-plugin-settings"]], "Starting/stopping acquisition": [[8, "starting-stopping-acquisition"]], "Processing data": [[8, "processing-data"]], "Continuous data": [[8, "continuous-data"], [66, "continuous-data"]], "Spike and event data": [[8, "spike-and-event-data"]], "Sending and receiving messages": [[8, "sending-and-receiving-messages"]], "Plugin parameters": [[8, "plugin-parameters"]], "Defining parameters": [[8, "defining-parameters"]], "Accessing parameters": [[8, "accessing-parameters"]], "Creating parameter editors": [[8, "creating-parameter-editors"]], "Responding to parameter value changes": [[8, "responding-to-parameter-value-changes"], [16, "responding-to-parameter-value-changes"], [17, "responding-to-parameter-value-changes"]], "Saving and loading custom parameters": [[8, "saving-and-loading-custom-parameters"]], "Record Engines": [[9, "record-engines"], [67, "record-engines"]], "Record Engines define how continuous data, events, and spikes are written to disk.": [[9, "id1"]], "NPY Files": [[9, "npy-files"]], "Sequential Block Files": [[9, "sequential-block-files"]], "Visualizer Plugins": [[10, "visualizer-plugins"]], "Visualizers are Processor Plugins that include a canvas for displaying data.": [[10, "id1"]], "Visualizer Editor methods": [[10, "visualizer-editor-methods"]], "Visualizer methods": [[10, "visualizer-methods"]], "Saving/loading settings": [[10, "saving-loading-settings"]], "Interactive Plots": [[10, "interactive-plots"]], "Open Ephys Plugin API": [[11, "open-ephys-plugin-api"]], "Logging": [[11, "logging"]], "Core Services": [[11, "core-services"]], "Developer Guide": [[12, "developer-guide"]], "Reporting bugs": [[12, "reporting-bugs"]], "Building a new plugin": [[12, "building-a-new-plugin"]], "Updating the host application": [[12, "updating-the-host-application"]], "Other projects": [[12, "other-projects"]], "FAQs": [[13, "faqs"]], "Measuring Closed-Loop Latency": [[14, "measuring-closed-loop-latency"]], "Required hardware": [[14, "required-hardware"]], "Configuring the Arduinos": [[14, "configuring-the-arduinos"]], "Connecting the devices": [[14, "connecting-the-devices"]], "Building the signal chain": [[14, "building-the-signal-chain"]], "Measuring system latency": [[14, "measuring-system-latency"]], "Settings that affect latency": [[14, "settings-that-affect-latency"]], "Next steps": [[14, "next-steps"], [16, "next-steps"]], "Synchronizing Data Streams": [[15, "synchronizing-data-streams"]], "General principles of synchronization": [[15, "general-principles-of-synchronization"]], "Hardware Configuration": [[15, "hardware-configuration"]], "Software Configuration": [[15, "software-configuration"]], "Monitoring and Recording": [[15, "monitoring-and-recording"]], "Loading and Processing": [[15, "loading-and-processing"]], "Questions?": [[15, "questions"]], "How To Make Your Own Plugin": [[16, "how-to-make-your-own-plugin"]], "Editing OpenEphysLib.cpp and other files": [[16, "editing-openephyslib-cpp-and-other-files"], [17, "editing-openephyslib-cpp-and-other-files"]], "Setting up the Processor methods": [[16, "setting-up-the-processor-methods"], [17, "setting-up-the-processor-methods"]], "Adding UI components to the editor": [[16, "adding-ui-components-to-the-editor"], [17, "adding-ui-components-to-the-editor"]], "Creating a slider parameter editor": [[16, "creating-a-slider-parameter-editor"]], "Creating a ComboBox parameter editor": [[16, "creating-a-combobox-parameter-editor"]], "Creating a custom parameter editor (optional)": [[16, "creating-a-custom-parameter-editor-optional"]], "Making Your Own Visualizer Plugin": [[17, "making-your-own-visualizer-plugin"]], "Creating a Combo Box": [[17, "creating-a-combo-box"]], "Populating the Combo Box": [[17, "populating-the-combo-box"]], "Defining plugin parameters": [[17, "defining-plugin-parameters"]], "Creating the Visualizer": [[17, "creating-the-visualizer"]], "Updating Canvas parameters": [[17, "updating-canvas-parameters"]], "Pushing spikes to the canvas": [[17, "pushing-spikes-to-the-canvas"]], "Calculating the spike rate": [[17, "calculating-the-spike-rate"]], "Tutorials": [[18, "tutorials"]], "Before you begin": [[19, "before-you-begin"]], "About Open Ephys": [[19, "about-open-ephys"]], "The philosopy behind the GUI": [[19, "the-philosopy-behind-the-gui"]], "Strengths and weaknesses": [[19, "strengths-and-weaknesses"]], "Things to keep in mind": [[19, "things-to-keep-in-mind"]], "Building a signal chain": [[20, "building-a-signal-chain"]], "Default configurations": [[20, "default-configurations"], [73, "default-configurations"]], "Adding a data source": [[20, "adding-a-data-source"]], "Adding a Record Node": [[20, "adding-a-record-node"]], "Visualizing continuous signals": [[20, "visualizing-continuous-signals"]], "Acquiring data": [[20, "acquiring-data"]], "Detecting spikes": [[20, "detecting-spikes"]], "Visualizing spikes": [[20, "visualizing-spikes"]], "Recording and listening to spikes": [[20, "recording-and-listening-to-spikes"]], "Exploring the user interface": [[21, "exploring-the-user-interface"]], "Main components": [[21, "main-components"]], "1. Processor List": [[21, "processor-list"]], "2. Signal Chain": [[21, "signal-chain"]], "3. Message Center": [[21, "message-center"]], "4. Control Panel": [[21, "control-panel"]], "5. Global Recording Options": [[21, "global-recording-options"]], "6. Viewport": [[21, "viewport"]], "Menu items": [[21, "menu-items"]], "File": [[21, "file"]], "Edit": [[21, "edit"]], "View": [[21, "view"]], "Help": [[21, "help"]], "Debug console": [[21, "debug-console"]], "Log files": [[21, "log-files"]], "Hardware requirements": [[22, "hardware-requirements"], [45, "hardware-requirements"]], "For the Open Ephys acquisition board": [[22, "for-the-open-ephys-acquisition-board"]], "Computer specs": [[22, "computer-specs"], [22, "id1"]], "Other hardware": [[22, "other-hardware"], [22, "id2"]], "For Neuropixels probes": [[22, "for-neuropixels-probes"]], "Installing the GUI": [[23, "installing-the-gui"]], "Via installer (recommended)": [[23, "via-installer-recommended"]], "Via .zip file": [[23, "via-zip-file"], [23, "id1"]], "Via installer (Ubuntu only)": [[23, "via-installer-ubuntu-only"]], "Via Portage (Gentoo only)": [[23, "via-portage-gentoo-only"]], "Via .zip file (all distros)": [[23, "via-zip-file-all-distros"]], "Via DMG (recommended)": [[23, "via-dmg-recommended"]], "Arduino Output": [[24, "arduino-output"]], "Allows events from within the GUI to control the state of digital output pins on an Arduino running Firmata. Provides a quick and easy way to translate information from software to hardware.": [[24, "id1"]], "Compatible devices": [[24, "compatible-devices"]], "Configuring your Arduino": [[24, "configuring-your-arduino"]], "Plugin configuration": [[24, "plugin-configuration"], [25, "plugin-configuration"], [26, "plugin-configuration"], [27, "plugin-configuration"], [28, "plugin-configuration"], [29, "plugin-configuration"], [31, "plugin-configuration"], [33, "plugin-configuration"], [34, "plugin-configuration"], [37, "plugin-configuration"], [39, "plugin-configuration"], [40, "plugin-configuration"], [43, "plugin-configuration"], [46, "plugin-configuration"], [47, "plugin-configuration"], [48, "plugin-configuration"], [49, "plugin-configuration"], [50, "plugin-configuration"], [51, "plugin-configuration"], [53, "plugin-configuration"], [54, "plugin-configuration"], [55, "plugin-configuration"], [56, "plugin-configuration"], [58, "plugin-configuration"], [59, "plugin-configuration"], [60, "plugin-configuration"], [61, "plugin-configuration"], [65, "plugin-configuration"]], "Audio Monitor": [[25, "audio-monitor"], [60, "audio-monitor"]], "Streams data from incoming continuous channels to the computer\u2019s audio output.": [[25, "id1"]], "Channel selection": [[25, "channel-selection"], [48, "channel-selection"]], "Output options": [[25, "output-options"]], "Working with multiple data streams": [[25, "working-with-multiple-data-streams"], [26, "working-with-multiple-data-streams"], [28, "working-with-multiple-data-streams"], [29, "working-with-multiple-data-streams"], [49, "working-with-multiple-data-streams"], [58, "working-with-multiple-data-streams"], [62, "working-with-multiple-data-streams"]], "Bandpass Filter": [[26, "bandpass-filter"]], "Filters incoming continuous data between the specified low cutoff and high cutoff frequencies (Hz) using a 2nd-order Butterworth filter (maximally flat frequency response in the passband).": [[26, "id1"]], "Filter parameters": [[26, "filter-parameters"]], "Selecting channels": [[26, "selecting-channels"]], "Filter details": [[26, "filter-details"]], "CNN Ripple": [[27, "cnn-ripple"]], "Uses a 1D convolutional neural network to detect hippocampal ripple events across 8 channels simultaneously. This plugin has been tested with linear arrays, high-density silicon probes, and Neuropixels, and can be used for online or offline ripple detection.": [[27, "id1"]], "Installing and upgrading": [[27, "installing-and-upgrading"], [30, "installing-and-upgrading"], [31, "installing-and-upgrading"], [32, "installing-and-upgrading"], [33, "installing-and-upgrading"], [35, "installing-and-upgrading"], [38, "installing-and-upgrading"], [39, "installing-and-upgrading"], [41, "installing-and-upgrading"], [42, "installing-and-upgrading"], [43, "installing-and-upgrading"], [44, "installing-and-upgrading"], [45, "installing-and-upgrading"], [46, "installing-and-upgrading"], [47, "installing-and-upgrading"], [48, "installing-and-upgrading"], [50, "installing-and-upgrading"], [51, "installing-and-upgrading"], [52, "installing-and-upgrading"], [55, "installing-and-upgrading"], [56, "installing-and-upgrading"], [57, "installing-and-upgrading"], [59, "installing-and-upgrading"], [62, "installing-and-upgrading"], [63, "installing-and-upgrading"], [64, "installing-and-upgrading"], [66, "installing-and-upgrading"]], "More information": [[27, "more-information"], [55, "more-information"]], "Channel Map": [[28, "channel-map"]], "Used to reorder and remove channels within the signal chain.": [[28, "id1"]], "Reordering channels": [[28, "reordering-channels"]], "Removing channels": [[28, "removing-channels"]], "Saving and loading channel mappings": [[28, "saving-and-loading-channel-mappings"]], "Common Average Reference": [[29, "common-average-reference"]], "Used to create a reference from the average of multiple channels. Helpful for removing noise that\u2019s shared across electrodes.": [[29, "id1"]], "Crossing Detector": [[30, "crossing-detector"]], "Emits a TTL event when a continuous channel crosses a specified threshold level. Each Crossing Detector can only process one input channel at a time, but multiple detectors can be placed in series to trigger on as many channels as desired.": [[30, "id1"]], "Recommended signal chain": [[30, "recommended-signal-chain"], [34, "recommended-signal-chain"], [48, "recommended-signal-chain"], [49, "recommended-signal-chain"], [50, "recommended-signal-chain"], [55, "recommended-signal-chain"], [58, "recommended-signal-chain"], [60, "recommended-signal-chain"]], "Plugin Configuration": [[30, "plugin-configuration"], [32, "plugin-configuration"], [35, "plugin-configuration"], [38, "plugin-configuration"], [41, "plugin-configuration"], [57, "plugin-configuration"], [63, "plugin-configuration"], [64, "plugin-configuration"], [66, "plugin-configuration"]], "General settings": [[30, "general-settings"]], "Threshold level": [[30, "threshold-level"]], "Event criteria": [[30, "event-criteria"]], "Event duration": [[30, "event-duration"]], "Data Snapshot": [[31, "data-snapshot"]], "Converts a short segment of data into an image (time x channels). Such images are typically created offline to assess data quality, but this plugin makes it possible to generate them during an experiment.": [[31, "id1"]], "Plugin usage": [[31, "plugin-usage"], [44, "plugin-usage"], [47, "plugin-usage"]], "Ephys Socket": [[32, "ephys-socket"]], "Receives continuous data from the OpenCVMatSocket in Bonsai. This is intended to be a quick way to stream ephys data from Bonsai, for example if you\u2019re performing closed-loop feedback in Bonsai, but want to visualize your data in the Open Ephys GUI.": [[32, "id1"]], "In Bonsai": [[32, "in-bonsai"]], "In Open Ephys": [[32, "in-open-ephys"]], "Event Broadcaster": [[33, "event-broadcaster"]], "Sends events from the GUI to external applications using a ZeroMQ socket. Can be used to transmit \u201clightweight\u201d information about ongoing spikes/events; if the full continuous data is needed, the ZMQ Interface should be used instead.": [[33, "id1"]], "JSON Packet Format": [[33, "json-packet-format"]], "Spikes": [[33, "spikes"], [68, "spikes"], [69, "spikes"], [70, "spikes"]], "TTL Events": [[33, "ttl-events"], [43, "ttl-events"]], "Raw Binary Packet Format": [[33, "raw-binary-packet-format"]], "Receiving data in Python": [[33, "receiving-data-in-python"]], "Event Translator": [[34, "event-translator"]], "Copies events from one data stream to all other synchronized streams.": [[34, "id1"]], "Expected behavior": [[34, "expected-behavior"]], "Falcon Output": [[35, "falcon-output"]], "Streams continuous channels with low latency.": [[35, "id1"]], "Creating a custom client": [[35, "creating-a-custom-client"]], "Falcon Input": [[35, "falcon-input"]], "Latency Measurements": [[35, "latency-measurements"]], "File Reader": [[36, "file-reader"]], "Reads data from a local file.": [[36, "id1"]], "Loading Data": [[36, "loading-data"]], "File Scrubbing": [[36, "file-scrubbing"]], "Sample Data": [[36, "sample-data"]], "Other input data": [[36, "other-input-data"]], "LFP Viewer": [[37, "lfp-viewer"]], "\u201cLFP\u201d stands for \u201clocal field potential,\u201d but this visualizer can display any type of continuous signal. It\u2019s an essential plugin for monitoring overall data quality before and during an experiment. Each LFP Viewer can display up to 3 segments of data at a time, either side-by-side or stacked on top of one another.": [[37, "id1"]], "Layout selection": [[37, "layout-selection"]], "Main options": [[37, "main-options"]], "Additional options": [[37, "additional-options"]], "Thresholds": [[37, "thresholds"]], "Channels": [[37, "channels"]], "Signals": [[37, "signals"]], "Triggered display": [[37, "triggered-display"]], "Single-channel mode": [[37, "single-channel-mode"]], "LSL Inlet": [[38, "lsl-inlet"]], "Streams continuous data from devices that use the Lab Streaming Layer protocol. See the Lab Streaming Layer documentation for more information about this library and a list of supported devices.": [[38, "id1"]], "MATLAB Interface": [[39, "matlab-interface"]], "Streams one channel of continuous data from the Open Ephys GUI to a live Matlab session. A Matlab API allows seamless processing of the incoming data in real time.": [[39, "id1"]], "Matlab API": [[39, "matlab-api"]], "Merger": [[40, "merger"]], "Allows multiple signal chains to be combined into one.": [[40, "id2"]], "Recommended usage": [[40, "recommended-usage"], [61, "recommended-usage"]], "Multi-Band Integrator": [[41, "multi-band-integrator"]], "Mixes, weights, and applies a rolling average to bandwidths of interest on a single channel. This plugin can be used to trigger feedback based on neural oscillations.": [[41, "id1"]], "NI-DAQmx": [[42, "ni-daqmx"]], "Streams analog and digital data from National Instruments (NI) hardware. Use multiple instances of this plugin to acquire data from several PXI-, PCI-, and/or USB-based NI devices simultaneously. Can be used in tandem with the Neuropix-PXI plugin, to read in analog and digital inputs in parallel with Neuropixels data.": [[42, "id2"]], "Requirements": [[42, "requirements"]], "Compatible hardware": [[42, "compatible-hardware"]], "Connecting to your NIDAQ hardware": [[42, "connecting-to-your-nidaq-hardware"]], "Offline Synchronization": [[42, "offline-synchronization"]], "Online Synchronization": [[42, "online-synchronization"]], "NIDAQ Device Comparison": [[42, "nidaq-device-comparison"]], "PXI-6133": [[42, "pxi-6133"]], "PXIe-6341": [[42, "pxie-6341"]], "PXI-6521": [[42, "pxi-6521"]], "PCIe-6321": [[42, "pcie-6321"]], "USB-6001": [[42, "usb-6001"]], "Network Events": [[43, "network-events"]], "Adds TTL events via a network connection.": [[43, "id1"]], "Remote control commands": [[43, "remote-control-commands"]], "Other commands": [[43, "other-commands"]], "Example Code": [[43, "example-code"], [66, "example-code"]], "Matlab": [[43, "matlab"]], "Python": [[43, "python"]], "Neuropixels CAR": [[44, "neuropixels-car"]], "A common average reference optimized for use with Neuropixels probes.": [[44, "id1"]], "Neuropixels sampling pattern": [[44, "neuropixels-sampling-pattern"]], "Neuropixels PXI": [[45, "neuropixels-pxi"]], "Streams data from a PXI-based Neuropixels data acquisition system.": [[45, "id1"]], "Compatible probes": [[45, "compatible-probes"]], "Connecting to the PXI system": [[45, "connecting-to-the-pxi-system"]], "Troubleshooting connections": [[45, "troubleshooting-connections"]], "Calibrating probes": [[45, "calibrating-probes"]], "Configuring probe settings": [[45, "configuring-probe-settings"]], "Reference selection": [[45, "reference-selection"]], "Activity view": [[45, "activity-view"]], "Saving, loading, and copying settings": [[45, "saving-loading-and-copying-settings"]], "Default loading and saving": [[45, "default-loading-and-saving"]], "Copying settings between probes": [[45, "copying-settings-between-probes"]], "IMRO files": [[45, "imro-files"]], "ProbeInterface JSON files": [[45, "probeinterface-json-files"]], "Plugin data streams": [[45, "plugin-data-streams"]], "Customizing stream names": [[45, "customizing-stream-names"]], "Synchronization settings": [[45, "synchronization-settings"]], "Simulation mode": [[45, "simulation-mode"]], "Built-in self tests": [[45, "built-in-self-tests"], [45, "id2"]], "Headstage tests": [[45, "headstage-tests"]], "Updating basestation firmware": [[45, "updating-basestation-firmware"]], "Remote control": [[45, "remote-control"], [47, "remote-control"], [72, "remote-control"]], "OSC Events": [[46, "osc-events"]], "Converts Open Sound Control (OSC) messages into TTL events. This plugin was designed to provide a simple way to send information from Bonsai to the Open Ephys GUI, but it will work with any application that can send OSC messages.": [[46, "id1"]], "Bonsai configuration": [[46, "bonsai-configuration"]], "Online PSTH": [[47, "online-psth"]], "Aligns spike times to incoming TTL events in order to create a peri-stimulus time histogram displays for an unlimited number of conditions.": [[47, "id1"]], "Define the trigger conditions": [[47, "define-the-trigger-conditions"]], "Define the window size": [[47, "define-the-window-size"]], "Display options": [[47, "display-options"]], "Display type": [[47, "display-type"]], "Display layout": [[47, "display-layout"]], "Triggering methods": [[47, "triggering-methods"]], "Working with the Spike Sorter": [[47, "working-with-the-spike-sorter"]], "Phase Calculator": [[48, "phase-calculator"]], "Estimates the phase of a continuous input signal within a specified passband. It can be used to perform phase-specific closed-loop stimulation, typically in combination with the Crossing Detector.": [[48, "id1"]], "Defining the frequency band of interest": [[48, "defining-the-frequency-band-of-interest"]], "Visualization": [[48, "visualization"], [57, "visualization"]], "Phase Detector": [[49, "phase-detector"]], "Emits events when a continuous signal arrives at a specific \u201cphase,\u201d which really means a peak, falling zero-crossing, trough, or rising zero-crossing. It was originally designed to trigger output at specific phases of an 8 Hz theta oscillation in mouse hippocampus.": [[49, "id1"]], "Probe Viewer": [[50, "probe-viewer"]], "Visualizes the signal from a linear probe as a heatmap (time x channels). Can be configured to show RMS signal, spike rate, or power in different frequency bands.": [[50, "id1"]], "Render modes": [[50, "render-modes"]], "Anatomy overlay": [[50, "anatomy-overlay"]], "Via Pinpoint": [[50, "via-pinpoint"]], "Via config messages": [[50, "via-config-messages"]], "Pulse Pal": [[51, "pulse-pal"]], "Triggers the outputs of a Pulse Pal, an open-source pulse train generator developed and sold by Sanworks.": [[51, "id1"]], "Hardware Requirements": [[51, "hardware-requirements"]], "Trigger and gate channels": [[51, "trigger-and-gate-channels"]], "Pulse train settings": [[51, "pulse-train-settings"]], "Python Processor": [[52, "python-processor"]], "Modifies incoming continuous data and handles events and spikes using custom code written in Python.": [[52, "id1"]], "Setting up a Python environment": [[52, "setting-up-a-python-environment"]], "Setting the Python Interpreter Path": [[52, "setting-the-python-interpreter-path"]], "Creating & loading a Python Module": [[52, "creating-loading-a-python-module"]], "Limitations": [[52, "limitations"]], "Record Control": [[53, "record-control"]], "Allows recording to be automatically toggled on and off by TTL inputs, instead of manually pressing the record button. It can be used to trigger recording using external TTLs, or based on events that are detected in a continuous data stream.": [[53, "id1"]], "Trigger modes": [[53, "trigger-modes"]], "Rhythm Plugins": [[54, "rhythm-plugins"]], "Streams data from any device running Intan\u2019s \u201cRhythm\u201d firmware. It is currently compatible with both the Open Ephys acquisition board and the Intan RHD USB Interface Board. Support for additional Intan hardware is coming soon.": [[54, "id1"]], "Headstages": [[54, "headstages"], [65, "headstages"]], "Sample rate selection": [[54, "sample-rate-selection"], [65, "sample-rate-selection"]], "Bandwidth interface": [[54, "bandwidth-interface"], [65, "bandwidth-interface"]], "DSP button": [[54, "dsp-button"], [65, "dsp-button"]], "Audio output": [[54, "audio-output"], [65, "audio-output"]], "Noise slicer": [[54, "noise-slicer"], [65, "noise-slicer"]], "ADC selection": [[54, "adc-selection"], [65, "adc-selection"]], "DAC TTLs": [[54, "dac-ttls"], [65, "dac-ttls"]], "DAC High-pass filter": [[54, "dac-high-pass-filter"], [65, "dac-high-pass-filter"]], "TTL settle": [[54, "ttl-settle"], [65, "ttl-settle"]], "Impedance testing": [[54, "impedance-testing"], [65, "impedance-testing"]], "Ripple Detector": [[55, "ripple-detector"]], "Emits a TTL event when a hippocampal ripple is detected on one continuous channel.": [[55, "id1"]], "Ripple detection algorithm": [[55, "ripple-detection-algorithm"]], "River Output": [[56, "river-output"]], "Streams spikes and events to a Redis database with very low latency.": [[56, "id1"]], "Background": [[56, "background"]], "Database setup": [[56, "database-setup"]], "Creating a new table": [[56, "creating-a-new-table"]], "Reading data out": [[56, "reading-data-out"]], "Spectrum Viewer": [[57, "spectrum-viewer"]], "Displays the real-time power spectrum for up to 8 continuous channels.": [[57, "id1"]], "Power Spectrum": [[57, "power-spectrum"]], "Spectrogram": [[57, "spectrogram"]], "Spike Detector": [[58, "spike-detector"]], "Detects spikes in continuous data and packages them as events that can be read by downstream processors.": [[58, "id1"]], "Creating electrodes": [[58, "creating-electrodes"]], "Adjusting parameters": [[58, "adjusting-parameters"]], "Thresholding algorithms": [[58, "thresholding-algorithms"]], "Spike Sorter": [[59, "spike-sorter"]], "Sorts spikes based on manually drawn boxes in waveform space, or boundaries in PCA space. 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\ No newline at end of file