requirements.txt

#
# This file is autogenerated by pip-compile with python 3.9
# To update, run:
#
#    pip-compile
#
-e file:.
    # via -r requirements.in
appnope==0.1.3
    # via
    #   ipykernel
    #   ipython
argon2-cffi==21.3.0
    # via notebook
argon2-cffi-bindings==21.2.0
    # via argon2-cffi
asttokens==2.0.5
    # via stack-data
attrs==21.4.0
    # via
    #   jsonschema
    #   pytest
backcall==0.2.0
    # via ipython
beautifulsoup4==4.11.1
    # via nbconvert
bleach==5.0.0
    # via nbconvert
cffi==1.15.0
    # via
    #   argon2-cffi-bindings
    #   rpy2
cloudpickle==2.1.0
    # via doit
coverage[toml]==6.4.1
    # via pytest-cov
cycler==0.11.0
    # via matplotlib
cython==0.29.30
    # via cost-based-selection
debugpy==1.6.0
    # via ipykernel
decorator==5.1.1
    # via ipython
defusedxml==0.7.1
    # via nbconvert
doit==0.36.0
    # via cost-based-selection
entrypoints==0.4
    # via
    #   jupyter-client
    #   nbconvert
executing==0.8.3
    # via stack-data
fastjsonschema==2.15.3
    # via nbformat
flake8==4.0.1
    # via cost-based-selection
fonttools==4.33.3
    # via matplotlib
importlib-metadata==4.11.4
    # via doit
iniconfig==1.1.1
    # via pytest
ipykernel==6.14.0
    # via
    #   ipywidgets
    #   jupyter
    #   jupyter-console
    #   notebook
    #   qtconsole
ipython==8.4.0
    # via
    #   ipykernel
    #   ipywidgets
    #   jupyter-console
ipython-genutils==0.2.0
    # via
    #   ipywidgets
    #   notebook
    #   qtconsole
ipywidgets==7.7.0
    # via jupyter
jedi==0.18.1
    # via ipython
jinja2==3.1.2
    # via
    #   nbconvert
    #   notebook
    #   rpy2
joblib==1.1.0
    # via
    #   cost-based-selection
    #   scikit-learn
jsonschema==4.6.0
    # via nbformat
jupyter==1.0.0
    # via -r requirements.in
jupyter-client==7.3.4
    # via
    #   ipykernel
    #   jupyter-console
    #   nbclient
    #   notebook
    #   qtconsole
jupyter-console==6.4.3
    # via jupyter
jupyter-core==4.10.0
    # via
    #   jupyter-client
    #   nbconvert
    #   nbformat
    #   notebook
    #   qtconsole
jupyterlab-pygments==0.2.2
    # via nbconvert
jupyterlab-widgets==1.1.0
    # via ipywidgets
kiwisolver==1.4.3
    # via matplotlib
line-profiler==3.5.1
    # via -r requirements.in
markupsafe==2.1.1
    # via
    #   jinja2
    #   nbconvert
matplotlib==3.5.2
    # via cost-based-selection
matplotlib-inline==0.1.3
    # via
    #   ipykernel
    #   ipython
mccabe==0.6.1
    # via flake8
mistune==0.8.4
    # via nbconvert
nbclient==0.6.4
    # via nbconvert
nbconvert==6.5.0
    # via
    #   jupyter
    #   notebook
nbformat==5.4.0
    # via
    #   ipywidgets
    #   nbclient
    #   nbconvert
    #   notebook
nest-asyncio==1.5.5
    # via
    #   ipykernel
    #   jupyter-client
    #   nbclient
    #   notebook
networkit==10.0
    # via cost-based-selection
networkx==2.8.4
    # via cost-based-selection
notebook==6.4.12
    # via
    #   jupyter
    #   widgetsnbextension
numpy==1.22.4
    # via
    #   cost-based-selection
    #   matplotlib
    #   networkit
    #   pandas
    #   scikit-learn
    #   scipy
packaging==21.3
    # via
    #   ipykernel
    #   matplotlib
    #   nbconvert
    #   pytest
    #   qtpy
pandas==1.4.2
    # via cost-based-selection
pandocfilters==1.5.0
    # via nbconvert
parso==0.8.3
    # via jedi
pexpect==4.8.0
    # via ipython
pickleshare==0.7.5
    # via ipython
pillow==9.1.1
    # via matplotlib
pluggy==1.0.0
    # via pytest
prometheus-client==0.14.1
    # via notebook
prompt-toolkit==3.0.29
    # via
    #   ipython
    #   jupyter-console
psutil==5.9.1
    # via ipykernel
ptyprocess==0.7.0
    # via
    #   pexpect
    #   terminado
pure-eval==0.2.2
    # via stack-data
py==1.11.0
    # via pytest
pycodestyle==2.8.0
    # via flake8
pycparser==2.21
    # via cffi
pyflakes==2.4.0
    # via flake8
pygments==2.12.0
    # via
    #   ipython
    #   jupyter-console
    #   nbconvert
    #   qtconsole
pyparsing==3.0.9
    # via
    #   matplotlib
    #   packaging
pyrsistent==0.18.1
    # via jsonschema
pytest==7.1.2
    # via
    #   cost-based-selection
    #   pytest-cov
pytest-cov==3.0.0
    # via cost-based-selection
python-dateutil==2.8.2
    # via
    #   jupyter-client
    #   matplotlib
    #   pandas
pytz==2022.1
    # via
    #   pandas
    #   rpy2
pytz-deprecation-shim==0.1.0.post0
    # via tzlocal
pyzmq==23.1.0
    # via
    #   jupyter-client
    #   notebook
    #   qtconsole
qtconsole==5.3.1
    # via jupyter
qtpy==2.1.0
    # via qtconsole
rpy2==3.4.5
    # via
    #   -r requirements.in
    #   cost-based-selection
scikit-learn==1.1.1
    # via sklearn
scipy==1.8.1
    # via
    #   cost-based-selection
    #   networkit
    #   scikit-learn
send2trash==1.8.0
    # via notebook
six==1.16.0
    # via
    #   bleach
    #   python-dateutil
sklearn==0.0
    # via cost-based-selection
snakeviz==2.1.1
    # via -r requirements.in
soupsieve==2.3.2.post1
    # via beautifulsoup4
stack-data==0.2.0
    # via ipython
terminado==0.15.0
    # via notebook
threadpoolctl==3.1.0
    # via scikit-learn
tinycss2==1.1.1
    # via nbconvert
tomli==2.0.1
    # via
    #   coverage
    #   pytest
tornado==6.1
    # via
    #   ipykernel
    #   jupyter-client
    #   notebook
    #   snakeviz
    #   terminado
tqdm==4.64.0
    # via cost-based-selection
traitlets==5.2.2.post1
    # via
    #   ipykernel
    #   ipython
    #   ipywidgets
    #   jupyter-client
    #   jupyter-core
    #   matplotlib-inline
    #   nbclient
    #   nbconvert
    #   nbformat
    #   notebook
    #   qtconsole
tzdata==2022.1
    # via pytz-deprecation-shim
tzlocal==4.2
    # via rpy2
wcwidth==0.2.5
    # via prompt-toolkit
webencodings==0.5.1
    # via
    #   bleach
    #   tinycss2
widgetsnbextension==3.6.0
    # via ipywidgets
zipp==3.8.0
    # via importlib-metadata

# The following packages are considered to be unsafe in a requirements file:
# setuptools