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pipeline.yaml
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name: Pipeline
on:
push:
branches: [main]
pull_request:
branches: [main]
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Lint workflow
uses: snakemake/[email protected]
with:
directory: .
snakefile: workflow/Snakefile
args: "--lint"
tests:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Noise model inference
uses: snakemake/[email protected]
with:
directory: .
snakefile: workflow/Snakefile
args: "--configfile=tests/noise_model/config.yaml --use-conda --show-failed-logs --cores=all --conda-cleanup-pkgs cache --conda-frontend=mamba tests/noise_model/noise/process.fits"
- name: Bulk orbit inference
uses: snakemake/[email protected]
with:
directory: .
snakefile: workflow/Snakefile
args: "--configfile=tests/noise_model/config.yaml --use-conda --show-failed-logs --cores=all --conda-cleanup-pkgs cache --conda-frontend=mamba tests/noise_model/inference/inferred.fits.gz"