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add_fiveprimeutr adds UTR that overlaps CDS when UTR is at the start of CDS #1

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johannesnicolaus opened this issue May 17, 2024 · 0 comments

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@johannesnicolaus
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For some SL peaks, the peak is exactly at the 1st base of the CDS, so that it overlaps the start of CDS. There needs to be a better way to handle this, for example, by extending the transcript by one base upstream.

When sanitizing using AGAT, the UTR is considered supernumerary and gets removed.

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