Changes:
-
Dropping orphan concept and source concept functions, as these are now implemented much better in the CohortDiagnostics packages.
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Replacing ff with Andromeda for storage of large data objects.
Bugfixes:
- Throw meaningful error when there are not enough negative controls with sufficient outcome count to perform positive control synthesis.
Changes:
-
Renamed synthesizePositiveControls to synthesizeReferenceSetPositiveControls, injectSignals to synthesizePositiveControls, and changed addExposureDaysToEnd to endAnchor.
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Dropping individual metric function. The computeMetrics function now computes the standard set of metrics.
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Added checkCohortSourceCodes and findOrphanSourceCodes functions.
Bugfixes:
- Fixed bug in positive control synthesis causing error when setting riskWindowStart to value other than 0.
Bugfixes:
- Fixed bug in positive control synthesis causing only most predictive covariates to be used when predicting outcome probabilities.