diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 6ec4cd449..7815d310a 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224717,8 +224717,7 @@ xref: RO:0002220 [Typedef] id: ambiguous_for_taxon -name: ambiguous_for_taxon -def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg] +name: ambiguous for taxon xref: RO:0002173 is_metadata_tag: true is_class_level: true @@ -224955,7 +224954,6 @@ xref: RO:0002285 id: develops_from name: develops from xref: RO:0002202 -is_a: has_developmental_contribution_from ! has developmental contribution from [Typedef] id: develops_from_part_of @@ -225039,9 +225037,7 @@ domain: UBERON:0001638 ! vein [Typedef] id: dubious_for_taxon -name: dubious_for_taxon -def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [https://orcid.org/0000-0002-6601-2165] -comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost +name: dubious for taxon xref: RO:0002174 is_metadata_tag: true is_class_level: true @@ -225071,8 +225067,6 @@ is_metadata_tag: true [Typedef] id: existence_ends_during name: existence ends during -def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [https://orcid.org/0000-0002-6601-2165] -synonym: "ceases_to_exist_during" EXACT [] xref: RO:0002492 [Typedef] @@ -225222,10 +225216,8 @@ xref: RO:0002372 [Typedef] id: has_no_connections_with -name: has_no_connections_with -def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [https://orcid.org/0000-0002-6601-2165] +name: has no connections with xref: RO:0002475 -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))" [] is_metadata_tag: true is_class_level: true @@ -225488,18 +225480,15 @@ xref: RO:0002572 [Typedef] id: mutually_spatially_disjoint_with -name: mutually_spatially_disjoint_with +name: mutually spatially disjoint with xref: RO:0002171 -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" [] is_metadata_tag: true is_class_level: true [Typedef] id: never_in_taxon -name: never_in_taxon -def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T." [PMID:20973947] +name: never in taxon xref: RO:0002161 -expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] is_metadata_tag: true is_class_level: true @@ -225593,9 +225582,7 @@ is_metadata_tag: true [Typedef] id: present_in_taxon -name: present_in_taxon -def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S." [https://orcid.org/0000-0002-6601-2165] -synonym: "applicable for taxon" EXACT [] +name: present in taxon xref: RO:0002175 is_metadata_tag: true is_class_level: true