From 786c660e74013af9dc545f703a1830bf6b00ddf7 Mon Sep 17 00:00:00 2001
From: Anita Caron <anitacaron@users.noreply.github.com>
Date: Fri, 13 Jan 2023 18:51:50 +0000
Subject: [PATCH] add iri-range-advanced QC

---
 src/ontology/Makefile                         |  2 +-
 src/ontology/uberon-odk.yaml                  |  1 +
 .../iri-range-advanced-violation.sparql       | 21 +++++++++++++++++++
 3 files changed, 23 insertions(+), 1 deletion(-)
 create mode 100755 src/sparql/iri-range-advanced-violation.sparql

diff --git a/src/ontology/Makefile b/src/ontology/Makefile
index 3487200869..df15103f07 100644
--- a/src/ontology/Makefile
+++ b/src/ontology/Makefile
@@ -39,7 +39,7 @@ REPORT_FAIL_ON =            ERROR
 REPORT_LABEL =              
 REPORT_PROFILE_OPTS =       --profile $(ROBOT_PROFILE)
 OBO_FORMAT_OPTIONS =        
-SPARQL_VALIDATION_CHECKS =  equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy 
+SPARQL_VALIDATION_CHECKS =  equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy iri-range-advanced 
 SPARQL_EXPORTS =            basic-report 
 ODK_VERSION_MAKEFILE =      v1.3.1
 
diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml
index 823459f78b..535cd8c8fe 100644
--- a/src/ontology/uberon-odk.yaml
+++ b/src/ontology/uberon-odk.yaml
@@ -108,6 +108,7 @@ robot_report:
     - obsolete-replaced_by
     - xrefs-mesh-pattern
     - label-synonym-polysemy
+    - iri-range-advanced
   custom_sparql_exports:
     - basic-report
 owltools_memory: '20G'
diff --git a/src/sparql/iri-range-advanced-violation.sparql b/src/sparql/iri-range-advanced-violation.sparql
new file mode 100755
index 0000000000..7e3f66b771
--- /dev/null
+++ b/src/sparql/iri-range-advanced-violation.sparql
@@ -0,0 +1,21 @@
+PREFIX never_in_taxon: <http://purl.obolibrary.org/obo/RO_0002161>
+PREFIX present_in_taxon: <http://purl.obolibrary.org/obo/RO_0002175>
+PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
+PREFIX dcterms: <http://purl.org/dc/terms/>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX foaf: <http://xmlns.com/foaf/0.1/>
+
+SELECT ?term ?property ?value
+WHERE {
+  VALUES ?property {
+    never_in_taxon:
+    present_in_taxon:
+    rdfs:seeAlso
+    foaf:depicted_by
+    oboInOwl:inSubset
+    dcterms:contributor  }
+  ?term ?property ?value .
+  FILTER(isIRI(?term) && (STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBERON_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBERON_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/uberon#") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBPROP_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/uberon/core#")))
+  FILTER (!isIRI(?value))
+}
+