Skip to content

Commit

Permalink
fix subset pipeline to remove taxslim version iri (#77)
Browse files Browse the repository at this point in the history
Co-authored-by: Anita Caron <[email protected]>
  • Loading branch information
Anita Caron and anitacaron authored Jun 20, 2023
1 parent 26bbfae commit 76658ac
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions subsets/Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,10 @@ taxslim: taxon-subset-ids.txt
robot convert -i taxslim.owl -f json -o taxslim.json

taxslim-disjoint-over-in-taxon.owl: taxslim
owltools taxslim.owl --create-taxon-disjoint-over-in-taxon --root NCBITaxon:1 --output $@.tmp.owl
owltools taxslim.owl --create-taxon-disjoint-over-in-taxon --root NCBITaxon:1
robot query --input taxslim.owl --format ttl --query add-taxon-disjoints.ru $@.tmp.ttl
robot merge --input $@.tmp.owl --input $@.tmp.ttl --output $@
rm $@.tmp.owl && rm $@.tmp.ttl
robot merge --input $@ --input $@.tmp.ttl --output $@.tmp.owl && mv $@.tmp.owl $@
rm $@.tmp.ttl

## The following should not be run as part of CI job.
## Admin for this project should run and check in results.
Expand Down

0 comments on commit 76658ac

Please sign in to comment.