dosdp.yml

name: Update DOSDP pattern files
on:
  workflow_dispatch:
  pull_request:
    branches: [ master ]
    paths:
      - 'src/patterns/**'
jobs:
  dosdp:
    runs-on: ubuntu-latest
    container: obolibrary/odkfull:v1.3.1
    strategy:
      max-parallel: 1
    steps:
      - name: Checkout main branch
        uses: actions/checkout@v2
        with:
          ref: ${{ github.event.pull_request.head.ref }}
      - name: work around permission issue
        run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
        
      - name: Refreshing DOSDP patterns files
        run: cd src/ontology/ && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' GITHUB_ACTION=true IMP=false MIR=false ../patterns/definitions.owl
      - name: Run ontology QC checks
        run: cd src/ontology && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' test IMP=false
      - name: Commit changes
        uses: EndBug/add-and-commit@v9
        with:
          message: 'Update dosdp patterns file'
          add: 'src/patterns/definitions.owl'