Add trait terms mapped to EFO measurement classes #246
Workflow file for this run
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| name: Update DOSDP pattern files | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [ master ] | |
| paths: | |
| - 'src/patterns/**' | |
| jobs: | |
| dosdp: | |
| runs-on: ubuntu-latest | |
| container: obolibrary/odkfull:v1.3.1 | |
| strategy: | |
| max-parallel: 1 | |
| steps: | |
| - name: Checkout main branch | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - name: work around permission issue | |
| run: git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| - name: Refreshing DOSDP patterns files | |
| run: cd src/ontology/ && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' GITHUB_ACTION=true IMP=false MIR=false ../patterns/definitions.owl | |
| - name: Run ontology QC checks | |
| run: cd src/ontology && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' test IMP=false | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| message: 'Update dosdp patterns file' | |
| add: 'src/patterns/definitions.owl' |