setup.cfg

[flake8]
max-line-length = 100
ignore = E203, E266, E501, W503
exclude = .tox,.git,*/migrations/*,*/static/CACHE/*,docs,node_modules

[pycodestyle]
max-line-length = 100
exclude=.tox,.git,*/migrations/*,*/static/CACHE/*,docs,node_modules

[versioneer]
VCS = git
style = pep440
versionfile_source = varfish/_version.py
versionfile_build = varfish/_version.py
tag_prefix = v

[coverage:run]
source =
    annotation
    bgjobs
    clinvar
    conservation
    dbsnp
    frequencies
    geneinfo
    importer
    pathways
    templatetags
    utility
    varfish
    variants
    svdbs
    svs
omit =
    varfish/_version.py
    *migrations*
    *tests*

[coverage:report]
exclude_lines =
    # Re-enable standard pragma
    pragma: no cover
    # Ignore repr() builtin definition, mostly useful for debug code anway
    def __repr__
    # Ignore the __main__ entry points
    if __name__ == '__main__':
    # Ignore abstract function bodies
    raise NotImplementedError