run-tests.sh

#!/bin/sh

#  Copyright 2016 Intel Corporation
#
#  Licensed under the Apache License, Version 2.0 (the "License");
#  you may not use this file except in compliance with the License.
#  You may obtain a copy of the License at
#
#       http://www.apache.org/licenses/LICENSE-2.0
#
#  Unless required by applicable law or agreed to in writing, software
#  distributed under the License is distributed on an "AS IS" BASIS,
#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  See the License for the specific language governing permissions and
#  limitations under the License.

set -e

# When installing from sdist, the pip freeze output cannot be used to
# detect editable mode. Use the "--sdist-mode" flag.
sdist_mode=$1

python3 -m pip freeze | grep -qi /brainiak \
        || [ ${sdist_mode:-default} = "--sdist-mode" ] \
        || {
    echo "You must install brainiak in editable mode"`
        `" before calling "$(basename "$0")
    exit 1
}

# Define MKL env variable that is required by Theano to run with MKL 2018
# If removing, also remove from .conda/*
export MKL_THREADING_LAYER=GNU

mpi_command=mpiexec
if [ ! -z $SLURM_NODELIST ]
then
    mpi_command=srun
fi
$mpi_command -n 2 coverage run -m pytest

# Coverage produces empty files which trigger warnings on combine
find . -name ".coverage.*" -size 0 -print0 | xargs -0 rm -f

coverage combine

# Travis error workaround
coverage_report=$(mktemp -u coverage_report_XXXXX) || {
    echo "mktemp -u error" >&2;
    exit 1;
}

set +e
coverage report > $coverage_report
report_exit_code=$?

coverage html
coverage xml

cat $coverage_report
rm $coverage_report

if [ $report_exit_code = 2 ]
then
    echo "WARNING: Coverage too low."
fi