diff --git a/README.md b/README.md index 6f4d176..12a8227 100644 --- a/README.md +++ b/README.md @@ -23,10 +23,10 @@ Detailed documentation of required storage space, processing power, and time spe | Source Repository | Cloud & on premise testing code | Description | Data input(s) | Contact author(s) | |---------|---------|---------|---------|---------| -| [mega-non-model-wgs-snakeflow](https://github.com/eriqande/mega-non-model-wgs-snakeflow) | [cloud](/GoogleCloud/mega-non-model-wgs-snakeflow) and [on prem](/sedna/mega-non-wgs-snakeflow) | With low coverage whole genome sequence data from multiple individuals, performs genome alignment through variant calling. | WGS data, in this example from 43 rockfish samples | [@eriqande](https://github.com/eriqande) | -| [Tourmaline](https://github.com/aomlomics/tourmaline)| [cloud](/GoogleCloud/tourmaline) and [on prem](/sedna/tourmaline) | Workflow to conduct DNA metabarcoding with Illumina sequencing amplicon data using Qiime2 | DNA metabarcoding data from 1014 eDNA collected from the Gulf of Alaska (GoA) amplified using 12S rRNA targeted Illumina short read sequencing | [@lukenoaa](https://github.com/lukenoaa) | -| [Amethyst](https://github.com/aomlomics/amethyst)| [cloud](/GoogleCloud/amethyst) and [on prem](/sedna/amethyst) | Workflow to conduct metagenomic analysis using whole genome shotgun sequencing with Illumina data, and is used to characterize microbial communities in an environmental sample. | 88 seawater metagenomes from the North Pacific, Southern California, and Florida, collected as part of the [Bio-GO-SHIP](https://biogoship.org/) project and sequenced using Illumina short reads. | [@lukenoaa](https://github.com/lukenoaa) | -| [Trinity](https://github.com/trinityrnaseq/trinityrnaseq)| [cloud](/GoogleCloud/trinity) and [on prem](/sedna/trinity) | Raw read trimming and denovo transcriptome assembly | 20 Illumina short read steelhead trout RNA samples| [@trinityrnaseq](https://github.com/trinityrnaseq)| +| [mega-non-model-wgs-snakeflow](https://github.com/eriqande/mega-non-model-wgs-snakeflow) | [cloud](/GoogleCloud/mega-non-model-wgs-snakeflow) and [on prem](/Sedna/mega-non-wgs-snakeflow) | With low coverage whole genome sequence data from multiple individuals, performs genome alignment through variant calling. | WGS data, in this example from 43 rockfish samples | [@eriqande](https://github.com/eriqande) | +| [Tourmaline](https://github.com/aomlomics/tourmaline)| [cloud](/GoogleCloud/tourmaline) and [on prem](/Sedna/tourmaline) | Workflow to conduct DNA metabarcoding with Illumina sequencing amplicon data using Qiime2 | DNA metabarcoding data from 1014 eDNA collected from the Gulf of Alaska (GoA) amplified using 12S rRNA targeted Illumina short read sequencing | [@lukenoaa](https://github.com/lukenoaa) | +| [Amethyst](https://github.com/aomlomics/amethyst)| [cloud](/GoogleCloud/amethyst) and [on prem](/Sedna/amethyst) | Workflow to conduct metagenomic analysis using whole genome shotgun sequencing with Illumina data, and is used to characterize microbial communities in an environmental sample. | 88 seawater metagenomes from the North Pacific, Southern California, and Florida, collected as part of the [Bio-GO-SHIP](https://biogoship.org/) project and sequenced using Illumina short reads. | [@lukenoaa](https://github.com/lukenoaa) | +| [Trinity](https://github.com/trinityrnaseq/trinityrnaseq)| [cloud](/GoogleCloud/trinity) and [on prem](/Sedna/trinity) | Raw read trimming and denovo transcriptome assembly | 20 Illumina short read steelhead trout RNA samples| [@trinityrnaseq](https://github.com/trinityrnaseq)| # Disclaimer