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topoCascadia_UserInputs_time1936_noTurbines.m
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topoCascadia_UserInputs_time1936_noTurbines.m
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%% user inputs
% =============================================================================
% _ _ _____ ___________ _____ _ _ ______ _ _ _____ _____
% | | | / ___| ___| ___ \ |_ _| \ | || ___ \ | | |_ _/ ___|
% | | | \ `--.| |__ | |_/ / | | | \| || |_/ / | | | | | \ `--.
% | | | |`--. \ __|| / | | | . ` || __/| | | | | | `--. \
% | |_| /\__/ / |___| |\ \ _| |_| |\ || | | |_| | | | /\__/ /
% \___/\____/\____/\_| \_| \___/\_| \_/\_| \___/ \_/ \____/
%
% =============================================================================
%% Parent Domain: Bathymetry and Coastlines
% =============================================================================
OPTIONS.Seabed_Source = 'ROMS'; % can be 'ROMS' or the higher resolution 'PSDEM' dataset
OPTIONS.resample_factor = 4; % resample the original coastline file with this factor of points
OPTIONS.resample_factor_bz = 4; % resample the normal projected Bezier interpolated coastline file with this factor of points
OPTIONS.mbuf = 1000; % buffer around the specified refinment box (distance in meters) ... only because the normal projection of coastline might be inside the bounding box
OPTIONS.coast_offset = 250; % offset from the coastline [meters] may need to increase for lower resolutions
OPTIONS.zz_step = 10; % for isobath plots (meters)
OPTIONS.z0 = 0; % zero? to-do: this could also be set by the ROMS data, and it changes each time step
% OPTIONS.aa = [-122.69 -122.68 48.152 48.1569]; % ULTRA TINY smaller ~3 million cells test domain (runs fast for debugging)
OPTIONS.dirTopo = '1_psdem'; % if Seabed_Source=PSDEM then use fileTopo
OPTIONS.fileTopo = 'inputs/bathymetry/topo/1_psdem/psdem_2005_plaid_27m.nc';
% OPTIONS.fileTopo = 'inputs/bathymetry/coast/1_Cascadia/psdem_2005_plaid_91m.nc';
% OPTIONS.fileTopo = 'inputs/bathymetry/coast/1_Cascadia/psdem_2005_plaid_9m.nc';
% OPTIONS.n_points = 2; % choose number of point probes to plot ROMS tidal cycles (ignored if point_x or point_y1 are non-empty)
% OPTIONS.point_x1 = []; % x-coordinate NED, point probe to plot ROMS tidal cycles, can be empty or a vector
% OPTIONS.point_y1 = []; % y-coordinate NED, point probe to plot ROMS tidal cycles, can be empty or a vector
% OPTIONS.point_x1 = [-122.7223, -122.7115]; % x-coordinate LON-LAT, point probe to plot ROMS tidal cycles, can be empty or a vector
% OPTIONS.point_y1 = [48.1617, 48.1767]; % y-coordinate LON-LAT, point probe to plot ROMS tidal cycles, can be empty or a vector
% OPTIONS.dir_ROMS = '/mnt/data-RAID-1/danny/ainlet_Kristen/pong.tamu.edu/~kthyng/ai65/OUT'; % directory with ROMS *.nc output files
OPTIONS.dir_ROMS = 'inputs/ROMS/OUT'; % directory with ROMS *.nc output files
OPTIONS.dirCoast = '1_Cascadia'; % can be empty if coastFile is also empty
OPTIONS.fileCoast = 'pnw_coast_detailed.mat'; % if empty, will be prompted for a new file
% this is probably going to have to be a relative path because datasets are large
% OPTIONS.fileTopo_ROMS = '/mnt/data-RAID-1/danny/ainlet_2006_3/OUT/ocean_his_0290.nc';
OPTIONS.fileTopo_ROMS = 'inputs/ROMS/OUT/ocean_his_1812.nc';
%% Turbines
% =============================================================================
OPTIONS.turbineFile = 'rotors.csv'; % name of turbine input file, or can be empty [] if want to place turbines manually with GUI
OPTIONS.nRotors = 20; % note: each turbine has two rotors
OPTIONS.nRpT = 2; % rotors per turbine
OPTIONS.diaRotor = 20; % rotor diamter
OPTIONS.spacingRot = 28; % spacing between rotor centerlines
OPTIONS.hubHeight = 30; % elevation of the rotor centerline from the seabed
OPTIONS.heading = 135; % direction that turbine is facing, 0/360 deg is East , counterclockwise
% =============================================================================
%% Computational Setup
% =============================================================================
OPTIONS.typeDEM = 'shadem'; % 'shadem' or 'dem', changes the appearance of figures
OPTIONS.runOnHPC = true; % if true, modifies the STARCCM license server and commands
OPTIONS.runHeadless = true; % if true, does not open any figures, does not open any interactive prompts (reads input files for all probe, turbine, figure inputs)
OPTIONS.nCPUs = 16; % if runOnHPC=false, number of CPUs to run on local computer, ignored if running on supercomputer (on HPC set CPUs within a PBS/SLURM script)
OPTIONS.DEBUG_LEVEL = 0;
% =============================================================================
%% RUN the main topo_Cascadia program
% =============================================================================
OPTIONS.casename = 'time-1936-noTurbines';
OPTIONS.turbineFile = false;
OPTIONS.runOnHPC = false;
OPTIONS.aa = [-122.7355 -122.6783 48.1473 48.1821]; % large domain for IJOME paper, and of the METS 2016 paper
% OPTIONS.aa = [-122.69 -122.68 48.152 48.1569]; % ULTRA TINY smaller ~3 million cells test domain (runs fast for debugging)
OPTIONS.fileTopo_ROMS = 'inputs/ROMS/OUT/ocean_his_1936.nc';
OPTIONS.nesting_times = [1936];
OPTIONS.nesting_tide = {'ebb'};
topoCascadia(OPTIONS);