apt.txt

# Do not name apt.txt because R installation scripts is removing apps
# and causing problems. Need to install after R installation

# Basic unix tools
man
man-db
manpages-posix
manpages-dev
manpages-posix-dev

# Download tools
curl
wget

# command line text editors
vim
emacs-nox
emacs-goodies-el
nano

# GUI text editors
emacs
vim-gtk3
gedit

# powerful terminal-based file manager, better than the one in JLab
mc

# Regular build tools for compiling common stuff
# most installed with R installation
build-essential
gfortran

# Dependencies for nbconvert and myst
# texlive is installed by R installation
# Add packages with tlmgr in rocker.sh

# Other useful document-related tools
# pandoc installed by R installation
imagemagick

# Some useful git utilities use basic Ruby
ruby

# Other niceties for command-line work and life
ack   # powerful grep-like tool
pydf  # colorized disk usage
tmux
screen
htop
nnn   # cmd line file manager
zsh
rsync
tig  # console UI for git
multitail
tree

# This section adds tools needed for desktop environment
# https://github.com/jupyterhub/jupyter-remote-desktop-proxy
dbus-x11
xfce4
xfce4-panel
xfce4-session
xfce4-settings
xorg
xubuntu-icon-theme
tigervnc-standalone-server
tigervnc-xorg-extension

# Git clients and tools
git-gui
gitg
qgit
meld

# Zotero
zotero
libpci-dev