From 7289410bf483bdfc53ed014dbf8aa99234af7060 Mon Sep 17 00:00:00 2001
From: Eli Holmes <eli.holmes@noaa.gov>
Date: Fri, 8 Nov 2024 11:51:04 -0800
Subject: [PATCH] Built site for gh-pages

---
 .nojekyll                     |  2 +-
 content/02-local-setup-r.html | 13 ++++++++++++-
 search.json                   | 28 +++++++++++++++++++++++++++-
 sitemap.xml                   |  2 +-
 4 files changed, 41 insertions(+), 4 deletions(-)

diff --git a/.nojekyll b/.nojekyll
index 0d172e0..6cba9ac 100644
--- a/.nojekyll
+++ b/.nojekyll
@@ -1 +1 @@
-9f3ed8d7
\ No newline at end of file
+ebf2515f
\ No newline at end of file
diff --git a/content/02-local-setup-r.html b/content/02-local-setup-r.html
index 2a808ff..0cae0bd 100644
--- a/content/02-local-setup-r.html
+++ b/content/02-local-setup-r.html
@@ -273,6 +273,8 @@ <h2 id="toc-title">On this page</h2>
   <li><a href="#install-r-4" id="toc-install-r-4" class="nav-link active" data-scroll-target="#install-r-4">Install R 4+</a></li>
   <li><a href="#install-rstudio-desktop" id="toc-install-rstudio-desktop" class="nav-link" data-scroll-target="#install-rstudio-desktop">Install RStudio Desktop</a></li>
   <li><a href="#install-the-needed-packages" id="toc-install-the-needed-packages" class="nav-link" data-scroll-target="#install-the-needed-packages">Install the needed packages</a></li>
+  <li><a href="#install-git-or-github-desktop" id="toc-install-git-or-github-desktop" class="nav-link" data-scroll-target="#install-git-or-github-desktop">Install Git or GitHub Desktop</a></li>
+  <li><a href="#github-authentication" id="toc-github-authentication" class="nav-link" data-scroll-target="#github-authentication">GitHub Authentication</a></li>
   </ul>
 <div class="toc-actions"><ul class="collapse"><li><a href="https://github.com/nmfs-opensci/Quarto-Workshop-2024/edit/main/content/02-local-setup-r.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/nmfs-opensci/Quarto-Workshop-2024/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li><li><a href="https://github.com/nmfs-opensci/Quarto-Workshop-2024/blob/main/content/02-local-setup-r.qmd" class="toc-action"><i class="bi empty"></i>View source</a></li></ul></div></nav>
     </div>
@@ -319,7 +321,16 @@ <h2 class="anchored" data-anchor-id="install-rstudio-desktop">Install RStudio De
 </section>
 <section id="install-the-needed-packages" class="level2">
 <h2 class="anchored" data-anchor-id="install-the-needed-packages">Install the needed packages</h2>
-<p>We will update this section closer to the workshops.</p>
+<p>For now install tidyverse.</p>
+<pre><code>install.packages(tidyverse)</code></pre>
+</section>
+<section id="install-git-or-github-desktop" class="level2">
+<h2 class="anchored" data-anchor-id="install-git-or-github-desktop">Install Git or GitHub Desktop</h2>
+<p>You will need Git for interacting with GitHub and cloning repositories that we will use later.</p>
+</section>
+<section id="github-authentication" class="level2">
+<h2 class="anchored" data-anchor-id="github-authentication">GitHub Authentication</h2>
+<p>Read this section: <a href="content/02-git.html">Authenticating to GitHub</a>.</p>
 
 
 </section>
diff --git a/search.json b/search.json
index 1722484..bfe20d5 100644
--- a/search.json
+++ b/search.json
@@ -96,7 +96,33 @@
     "href": "content/02-local-setup-r.html#install-the-needed-packages",
     "title": "Setting up on your computer - R users",
     "section": "Install the needed packages",
-    "text": "Install the needed packages\nWe will update this section closer to the workshops.",
+    "text": "Install the needed packages\nFor now install tidyverse.\ninstall.packages(tidyverse)",
+    "crumbs": [
+      "JupyterHub",
+      "Welcome",
+      "Set-up",
+      "R and RStudio on your computer"
+    ]
+  },
+  {
+    "objectID": "content/02-local-setup-r.html#install-git-or-github-desktop",
+    "href": "content/02-local-setup-r.html#install-git-or-github-desktop",
+    "title": "Setting up on your computer - R users",
+    "section": "Install Git or GitHub Desktop",
+    "text": "Install Git or GitHub Desktop\nYou will need Git for interacting with GitHub and cloning repositories that we will use later.",
+    "crumbs": [
+      "JupyterHub",
+      "Welcome",
+      "Set-up",
+      "R and RStudio on your computer"
+    ]
+  },
+  {
+    "objectID": "content/02-local-setup-r.html#github-authentication",
+    "href": "content/02-local-setup-r.html#github-authentication",
+    "title": "Setting up on your computer - R users",
+    "section": "GitHub Authentication",
+    "text": "GitHub Authentication\nRead this section: Authenticating to GitHub.",
     "crumbs": [
       "JupyterHub",
       "Welcome",
diff --git a/sitemap.xml b/sitemap.xml
index f35e4c5..3ba655a 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -18,7 +18,7 @@
   </url>
   <url>
     <loc>https://nmfs-opensci.github.io/Quarto-Workshop-2024/content/02-local-setup-r.html</loc>
-    <lastmod>2024-11-01T23:04:31.974Z</lastmod>
+    <lastmod>2024-11-08T19:50:47.068Z</lastmod>
   </url>
   <url>
     <loc>https://nmfs-opensci.github.io/Quarto-Workshop-2024/content/01-repro-reports.html</loc>