diff --git a/.Rbuildignore b/.Rbuildignore
new file mode 100644
index 0000000..33cc41e
--- /dev/null
+++ b/.Rbuildignore
@@ -0,0 +1,5 @@
+^.*\.Rproj$
+^\.Rproj\.user$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
diff --git a/.github/workflows/call-r-cmd-check.yml b/.github/workflows/call-r-cmd-check.yml
new file mode 100644
index 0000000..b0469d4
--- /dev/null
+++ b/.github/workflows/call-r-cmd-check.yml
@@ -0,0 +1,12 @@
+# Run r cmd check
+name: call-r-cmd-check
+# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
+on:
+# The default build trigger is to run the action on every push and pull request, for any branch
+  push:
+  # To run the default repository branch weekly on sunday, uncomment the following 2 lines
+  #schedule:
+    #- cron: '0 0 * * 0'
+jobs:
+  call-workflow:
+    uses: nmfs-fish-tools/ghactions4r/.github/workflows/r-cmd-check.yml@main
\ No newline at end of file
diff --git a/.github/workflows/call-update-pkgdown.yml b/.github/workflows/call-update-pkgdown.yml
new file mode 100644
index 0000000..aa87038
--- /dev/null
+++ b/.github/workflows/call-update-pkgdown.yml
@@ -0,0 +1,13 @@
+# updates exiting pkgdown site for a repository
+# deploys to a branch gh-pages
+name: call-update-pkgdown
+# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
+on:
+# this workflow runs on pushes to main or master or any time a new tag is pushed
+  # workflow_dispatch:
+  push:
+    # branches: [main, master]
+    # tags: ['*']
+jobs:
+  call-workflow:
+    uses: nmfs-fish-tools/ghactions4r/.github/workflows/update-pkgdown.yml@main
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index 5b6a065..fbac030 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,3 +2,5 @@
 .Rhistory
 .RData
 .Ruserdata
+StockAssessment/*/
+docs
diff --git a/DESCRIPTION b/DESCRIPTION
index c95280b..70a59e1 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -9,6 +9,11 @@ License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
     license
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.0.9000
+RoxygenNote: 7.3.1
 Imports: 
-    mvbutils
+    mvbutils,
+    tools
+Suggests: 
+    testthat (>= 3.0.0)
+Config/testthat/edition: 3
+Config/testthat/parallel: true
diff --git a/NAMESPACE b/NAMESPACE
index 60495e0..bd3aacd 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -7,3 +7,5 @@ export(Weight)
 export(add_object)
 export(read_in)
 export(shiny_dd)
+export(validate_Rd)
+import(tools)
diff --git a/R/.vscode/launch.json b/R/.vscode/launch.json
deleted file mode 100644
index 4dbd508..0000000
--- a/R/.vscode/launch.json
+++ /dev/null
@@ -1,28 +0,0 @@
-{
-    // Use IntelliSense to learn about possible attributes.
-    // Hover to view descriptions of existing attributes.
-    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
-    "version": "0.2.0",
-    "configurations": [
-        {
-            "name": "(gdb) Launch",
-            "type": "cppdbg",
-            "request": "launch",
-            "program": "enter program name, for example ${workspaceFolder}/a.exe",
-            "args": [],
-            "stopAtEntry": false,
-            "cwd": "${fileDirname}",
-            "environment": [],
-            "externalConsole": false,
-            "MIMode": "gdb",
-            "miDebuggerPath": "/path/to/gdb",
-            "setupCommands": [
-                {
-                    "description": "Enable pretty-printing for gdb",
-                    "text": "-enable-pretty-printing",
-                    "ignoreFailures": true
-                }
-            ]
-        }
-    ]
-}
\ No newline at end of file
diff --git a/R/Catch.R b/R/Catch.R
index 6a69080..8e0ff12 100644
--- a/R/Catch.R
+++ b/R/Catch.R
@@ -8,7 +8,7 @@
 #' \item{Rationale}{Landings and catch are sometimes thought to be
 #' interchangeable but they are not given that catch can also include
 #' bycatch or unwanted catch.}
-#' \item{Alternatives}{total mortality}
+#' \item{Alternatives}{total mortality, harvest, total removals}
 #' \item{Range of possible values}{0--Inf}
 #' \item{Units}{mt, numbers}
 #' }
diff --git a/R/FishingMortalityAtMaximumSustainableYield.R b/R/FishingMortalityAtMaximumSustainableYield.R
index a90ded1..0cb3d89 100644
--- a/R/FishingMortalityAtMaximumSustainableYield.R
+++ b/R/FishingMortalityAtMaximumSustainableYield.R
@@ -1,4 +1,5 @@
 #' Fishing mortality at maximum sustainable yield (FMSY)
+#'
 #' A biological reference point for fisheries management
 #' based on the fishing mortality rate (F) that achieves the maximum
 #' sustainable yield (MSY).
@@ -11,8 +12,8 @@
 #' where the subscript can be in either all capital letters or all
 #' lower-case letters, some use lower-case letters for the type of reference
 #' point, and some use all capital letters.}
-#' \item{Alternatives: Fproxy, F_msy, Fmsy}{}
-#' \item{Range of possible values: 0--Inf}{}
+#' \item{Alternatives}{Fproxy, F_msy, Fmsy}
+#' \item{Range of possible values}{0--Inf}
 #' \item{Units}{\code{time^{-1}}}
 #' }
-FishingMortalityAtMaximumSustainableYield <- NULL
\ No newline at end of file
+FishingMortalityAtMaximumSustainableYield <- NULL
diff --git a/R/Forecast.R b/R/Forecast.R
index 01df262..fbce9f7 100644
--- a/R/Forecast.R
+++ b/R/Forecast.R
@@ -1,6 +1,6 @@
 #' Forecast
 #'
-#' A probabilistic statement about future events.
+#' A probabilistic statement about future events based on what will happen.
 #'
 #' @format
 #' \describe{
diff --git a/R/Projection.R b/R/Projection.R
new file mode 100644
index 0000000..037adc7
--- /dev/null
+++ b/R/Projection.R
@@ -0,0 +1,15 @@
+#' Projection
+#'
+#' A probabilistic statement about future events based on what might happen.
+#'
+#' @format
+#' \describe{
+#' \item{Examples}{short-term projection}
+#' \item{Rationale}{Future weather is a forecast because it does not require
+#' an if statement, whereas future spawning biomass is a projection because
+#' it depends on an assumption about future catches.}
+#' \item{Alternatives}{forecast, prediction}
+#' \item{Range of possible values}{}
+#' \item{Units}{}
+#' }
+Projection <- NULL
diff --git a/R/SpawningBiomass.R b/R/SpawningBiomass.R
index 2a41919..1d1026c 100644
--- a/R/SpawningBiomass.R
+++ b/R/SpawningBiomass.R
@@ -1,18 +1,17 @@
 #' Spawning Biomass (SB)
 #'
-#' 1. The total weight of all fish (both males and females)
-#' in the population that contribute to reproduction. Often
-#' conventionally defined as the biomass of all individuals
-#' beyond “age at first maturity” or “size at first maturity,”
-#' i.e. beyond the age or size class in which 50 percent of
-#' the individuals are mature; 2. The total biomass of fish
-#' of reproductive age during the breeding season of a
-#' stock. Most often used as a proxy for measuring
-#' egg production, the SSB depends on the abundance of
-#' the various age classes composing the stock and their
-#' past exploitation pattern, rate of growth, fishing and
-#' natural mortality rates, onset of sexual maturity, and
-#' environmental conditions.
+#' The mass of fish (males and females or females only) in the 
+#' population that contribute to reproduction. Often conventionally 
+#' defined as the product of weight at age and the proportion 
+#' mature at age. Alternatively, it can be defined as the biomass of 
+#' all individuals at or above “age at 50 percent maturity” or “size 
+#' at 50 percent maturity” or the total biomass of fish of reproductive 
+#' age during the breeding season of a population. Spawning biomass depends on the 
+#' abundance of the various age classes composing the population and their 
+#' past exploitation pattern, rate of growth, fishing and natural mortality
+#' rates, onset of sexual maturity, and environmental conditions. Most often 
+#' used as a proxy for measuring egg production.
+#' 
 #'
 #' @format
 #' \describe{
diff --git a/R/validate_Rd.R b/R/validate_Rd.R
new file mode 100644
index 0000000..f771ea5
--- /dev/null
+++ b/R/validate_Rd.R
@@ -0,0 +1,72 @@
+#' Function to validate terms in the dictionary.
+#'
+#' The dictionary terms are written in R documentation (Rd) format.
+#' This function reads the Rd file using the `tools::parse_Rd` function
+#' validate the information in each section (e.g., examples, rationale,
+#' range of possible values, etc.).
+#'
+#' @param Rd_file a Rd filename to use as input.
+#' @return a message if the term passes all validations.
+#' @import tools
+#' @export
+validate_Rd <- function(Rd_file) {
+  if (is.null(Rd_file)) stop("Please provide the path to the R documentation (Rd) file.")
+
+  Rd <- tools::parse_Rd(Rd_file)
+  tags <- tools:::RdTags(Rd)
+
+  # Validate name
+  name <- Rd[[which(tags == "\\name")]]
+  if (is.null(name[[1]][1])) stop("Name is not provided. This should be the basename of the Rd file.")
+
+  # Validate title
+  title <- Rd[[which(tags == "\\title")]]
+  if (is.null(title[[1]][1])) stop("Title is not provided. Title should be capitalized and not end in a period.")
+
+  # Validate description
+  description <- Rd[[which(tags == "\\description")]]
+  if (gsub("[\r\n]", "", description[[2]][1]) == title[[1]][1] |
+    is.null(description[[1]][1])) {
+    stop("Description is not provided. This should be capitalized and not end in a period.")
+  }
+
+  # Extract format section for validating examples, rationale, alternatives, range of possible values, and units
+  format <- Rd[[which(tags == "\\format")]][[2]]
+  items <- c("Examples", "Rationale", "Alternatives", "Range of possible values", "Units")
+  missing_items <- items[!is.element(items, unlist(format))]
+  if (any(!is.element(items, unlist(format)))) stop(paste("Missing", paste(missing_items, collapse = ", ")))
+  
+  # Validate examples
+  if (format[[2]][[1]][[1]][1] == "Examples" &
+    length(format[[2]][[2]]) == 0) {
+    stop("Examples are not provided. Use NA if there is no input for examples.")
+  }
+
+  # Validate rationale
+  if (format[[4]][[1]][[1]][1] == "Rationale" &
+    length(format[[4]][[2]]) == 0) {
+    stop("Rationale is not provided.")
+  }
+
+  # Validate alternatives
+  if (format[[6]][[1]][[1]][1] == "Alternatives" &
+    length(format[[6]][[2]]) == 0) {
+    stop("Alternatives are not provided. Use NA if there is no input for alternatives.")
+  }
+
+  # Validate range of possible values
+  if (format[[8]][[1]][[1]][1] == "Range of possible values" &
+    length(format[[8]][[2]]) == 0) {
+    stop("Range of possible values is not provided. Use NA if there is no input for range of possible values.")
+  }
+
+  # Validate range of possible values
+  if (format[[10]][[1]][[1]][1] == "Units" &
+    length(format[[10]][[2]]) == 0) {
+    stop("Units are not provided. Use NA if there is no input for units.")
+  }
+
+
+  # Return a message if the term passes all validations
+  message(paste("Term", name[[1]][1], "has passed all validations!"))
+}
diff --git a/README.md b/README.md
index 4b1ccbf..c8b4c7c 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# data_dictionary
+# fishdictionary
 This is meant to be an open source `R` package that can be used to denote common fisheries terminology and standardize use. The dictionary is written in a JSON format and can be added to using the R functions described below.
 
 # Installation
@@ -8,6 +8,3 @@ This is meant to be an open source `R` package that can be used to denote common
 # Shiny app
 
 # How to contribute
-
-
-[Manuscript](https://docs.google.com/document/d/10FzlwMlHo6fe5Rh3F-HTWNMWzt4GAM8iaqe8dxBl0ks/edit?usp=sharing) 
diff --git a/TextAnalysis/top19_analysis.R b/TextAnalysis/top19_analysis.R
new file mode 100644
index 0000000..3042bdb
--- /dev/null
+++ b/TextAnalysis/top19_analysis.R
@@ -0,0 +1,409 @@
+library(googledrive)
+library(here)
+library(pdftools)
+library(tm)
+library(stringr)
+library(wordcloud)
+library(RColorBrewer)
+library(jpeg)
+library(grid)
+library(gridExtra)
+
+# Download stock assessment reports from Google Drive -------------
+
+## If authorize_GoogleDrive <- TRUE:
+## Users need to authorize googledrive package to access your Google Drive
+## Please follow the instructions from https://googledrive.tidyverse.org/reference/drive_auth.html and https://github.com/nmfs-openscapes/GoogleDrive1 to
+## authorize googledrive
+
+## If authorize_GoogleDrive <- FALSE:
+## Users need to manually download stock assessment reports from the
+## Assessment Docs Google Drive folder (https://drive.google.com/drive/folders/1uyLVjf7Xu2iMY6dhEjAAkB4l2vtSDMw9?usp=share_link) to fishdictionary/StockAssessment folder
+## The folder structure looks
+
+authorize_GoogleDrive <- FALSE
+if (authorize_GoogleDrive) {
+  # googledrive set-up: https://github.com/nmfs-openscapes/GoogleDrive1
+  download_assessments <- function(googledrive_url, folder_name, subfolder_name) {
+
+    # Get the files in the folder
+    dir_files <- googledrive::drive_ls(path = googledrive_url)
+    file_name <- dir_files$name
+
+    # Create folders to save downloaded files
+    if (!dir.exists(here::here(folder_name))) dir.create(here::here(folder_name))
+    if (!dir.exists(here::here(folder_name, subfolder_name))) dir.create(here::here(folder_name, subfolder_name))
+
+    # Download files from Google Drive
+    for (i in 1:length(dir_files$id)) {
+      googledrive::drive_download(file = dir_files$id[i], overwrite = TRUE, path = here::here(folder_name, subfolder_name, file_name[i]))
+    }
+  }
+
+  # Download AFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/1vbxiADIsjnCPGyOf-v4zTexOUSTidMTA",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "AFSC"
+  )
+
+  # Download NEFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/1edP73M7Bd4SpGLsgXIS8-jlqclA1QTZ9",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "NEFSC"
+  )
+
+  # Download NWFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/1UHv3f7JDkz3T6OUFNGiurBZIWR_EzyQq",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "NWFSC"
+  )
+
+  # Download PIFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/11I-3gwehVMEK_0aAkuytijNs7PXsu_e-",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "PIFSC"
+  )
+
+  # Download SEFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/12-09nqC7CvKfL2j1JX8ooi_bgMob2c1I",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "SEFSC"
+  )
+
+  # Download SWFSC stock assessment reports
+  download_assessments(
+    googledrive_url = "https://drive.google.com/drive/folders/1IqbncWlwbSwmBKroIfo-C9ckI_uGe6NG",
+    folder_name = file.path("StockAssessment"),
+    subfolder_name = "SWFSC"
+  )
+}
+
+# run_text_mining function ------------------------------------------------
+
+run_text_mining <- function(keyword, xlabels, working_path, 
+                            subfolder_path_all, subfolder_name_all, 
+                            subfolder_info, scenario_name) {
+  wordcloud_data <- wordcloud_data_mean <-vector(mode="list", length=length(subfolder_info))
+  for (org in seq_along(subfolder_info)){
+    subfolder_path <- subfolder_path_all[subfolder_info[[org]]]
+    subfolder_name <- subfolder_name_all[subfolder_info[[org]]]
+    
+    # Create keyword database
+    col_name <- c("ID", "Region", "File_Path", keyword)
+    frequency_database <- 
+      presence_database <- 
+      proportion_database <-
+      data.frame(matrix(NA, ncol = length(col_name)))
+    
+    colnames(frequency_database) <- 
+      colnames(presence_database) <- 
+      colnames(proportion_database) <-
+      col_name
+    
+    for (subfolder_id in seq_along(subfolder_path)) {
+      
+      file_path <- list.files(subfolder_path[subfolder_id], recursive = FALSE, full.names = TRUE)
+      
+      for (file_id in seq_along(file_path)) {
+        
+        # cat("file:", file_path[file_id], "\n")
+        file <- file_path[file_id]
+        
+        # Create metadata of files
+        docs <- tm::Corpus(URISource(file),
+                           readerControl = list(reader = readPDF)
+        )
+        
+        # Convert symbols to space
+        toSpace <- tm::content_transformer(
+          function(x, pattern) gsub(pattern, " ", x)
+        )
+        docs <- tm::tm_map(docs, toSpace, "/")
+        docs <- tm::tm_map(docs, toSpace, "@")
+        docs <- tm::tm_map(docs, toSpace, "\\|")
+        
+        # Convert text to lower case
+        docs <- tm::tm_map(
+          docs,
+          content_transformer(tolower)
+        )
+        
+        # Remove punctuations
+        docs <- tm::tm_map(docs, removePunctuation)
+        
+        # Eliminate extra white spaces
+        docs <- tm::tm_map(docs, stripWhitespace)
+        
+        frequency <- presence <- proportion <- c()
+        for (keyword_id in seq_along(keyword)) {
+          # print(paste0("Folder: ", subfolder_id, "; File: ", file_id, "; Keyword: ", keyword_id))
+          frequency[keyword_id] <- sum(stringr::str_count(docs[[1]]$content, paste("\\b", keyword[keyword_id], "\\b", sep = ""))) # Match if the current position is a word boundary
+          presence[keyword_id] <- ifelse(frequency[keyword_id] > 0, 1, 0)
+          proportion[keyword_id] <- round(frequency[keyword_id] / sum(stringr::str_count(docs[[1]]$content)) * 100, digits = 2)
+        }
+        
+        if (subfolder_id == 1 & file_id == 1) {
+          frequency_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], frequency)
+          
+          presence_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], presence)
+          
+          proportion_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], proportion)
+        } else {
+          frequency_database <- rbind(
+            frequency_database,
+            c(NA, subfolder_name[subfolder_id], file_path[file_id], frequency)
+          )
+          
+          presence_database <- rbind(
+            presence_database,
+            c(NA, subfolder_name[subfolder_id], file_path[file_id], presence)
+          )
+          
+          proportion_database <- rbind(
+            proportion_database,
+            c(NA, subfolder_name[subfolder_id], file_path[file_id], proportion)
+          )
+        }
+      }
+    }
+    
+    frequency_database$ID <- 1:nrow(frequency_database)
+    presence_database$ID <- 1:nrow(presence_database)
+    proportion_database$ID <- 1:nrow(proportion_database)
+    
+    frequency_database[, 4:ncol(frequency_database)] <- sapply(frequency_database[, 4:ncol(frequency_database)], as.numeric)
+    
+    frequency_database <- rbind(
+      frequency_database,
+      c(NA, NA, NA, apply(frequency_database[, 4:ncol(frequency_database)], 2, sum))
+    )
+    frequency_database[nrow(frequency_database), "ID"] <- "Sum"
+    
+    presence_database[, 4:ncol(presence_database)] <- sapply(presence_database[, 4:ncol(presence_database)], as.numeric)
+    presence_database <- rbind(
+      presence_database,
+      c(NA, NA, NA, apply(presence_database[, 4:ncol(presence_database)], 2, sum))
+    )
+    presence_database[nrow(presence_database), "ID"] <- "Sum"
+    
+    proportion_database[, 4:ncol(proportion_database)] <- sapply(proportion_database[, 4:ncol(proportion_database)], as.numeric)
+    proportion_database <- rbind(
+      proportion_database,
+      c(NA, NA, NA, apply(proportion_database[, 4:ncol(proportion_database)], 2, sum))
+    )
+    proportion_database[nrow(proportion_database), "ID"] <- "Sum"
+    
+    write.csv(frequency_database, file=here::here("TextAnalysis", paste0("top19_frequency_", names(subfolder_info)[org], "_", scenario_name, ".csv")), row.names=FALSE)
+    write.csv(presence_database, file=here::here("TextAnalysis", paste0("top19_presence_", names(subfolder_info)[org], "_", scenario_name, ".csv")), row.names=FALSE)
+    write.csv(proportion_database, file=here::here("TextAnalysis", paste0("top19_proportion_", names(subfolder_info)[org], "_", scenario_name, ".csv")), row.names=FALSE)
+    # Upload xlsx to Google Drive
+    if (authorize_GoogleDrive) {
+      # Google Drive folder id
+      id_googledrive <- "1BUsYYd11lE2TECqHru5tX6LwkMniVnKv"
+      googledrive::drive_upload(media = xlsx_path, path = as_id(id_googledrive), overwrite = TRUE, type = "spreadsheet")
+    }
+    
+    # Plot results ------------------------------------------------------------
+    frequency_database <- read.csv(file=here::here("TextAnalysis", paste0("top19_frequency_", names(subfolder_info)[org], "_", scenario_name, ".csv")))
+    presence_database<-read.csv(file=here::here("TextAnalysis", paste0("top19_presence_", names(subfolder_info)[org], "_", scenario_name, ".csv")))
+    proportion_database<-read.csv(file=here::here("TextAnalysis", paste0("top19_proportion_", names(subfolder_info)[org], "_", scenario_name, ".csv")))
+    
+    word_frequency <- as.matrix(frequency_database[frequency_database$ID == "Sum", 4:ncol(frequency_database)])
+    word_presence <- as.matrix(presence_database[presence_database$ID == "Sum", 4:ncol(presence_database)])
+    word_presence_mean <- as.matrix(presence_database[presence_database$ID == "Sum", 4:ncol(presence_database)])/(nrow(presence_database)-1)*100
+    word_proportion <- as.matrix(proportion_database[proportion_database$ID == "Sum", 4:ncol(proportion_database)])
+    
+    # barplot
+    jpeg(filename = here::here("TextAnalysis", paste0("top19_barplot_", names(subfolder_info)[org], "_", scenario_name, ".jpg")), width = 200, height = 120, units = "mm", res = 1200)
+    par(mar = c(6, 4, 1, 1), mfrow = c(3, 1))
+    frequency_barplot <- barplot(height = word_frequency, xaxt = "n", ylab = "Frequency")
+    text(frequency_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.8)
+    
+    
+    presence_barplot <- barplot(height = word_presence, xaxt = "n", ylab = "Presence")
+    text(presence_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.8)
+    
+    proportion_barplot <- barplot(height = word_proportion, xaxt = "n", ylab = "Proportion")
+    text(proportion_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.8)
+    
+    dev.off()
+    
+    jpeg(filename = here::here("TextAnalysis", paste0("top19_presence_", names(subfolder_info)[org], "_", scenario_name, ".jpg")), width = 200, height = 120, units = "mm", res = 1200)
+    par(mar = c(6, 4, 1, 1), mfrow = c(1, 1))
+    presence_barplot <- barplot(height = word_presence, xaxt = "n", ylab = "Presence (%)") 
+    text(presence_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.7)
+    dev.off()
+    
+    jpeg(filename = here::here("TextAnalysis", paste0("top19_presence_mean_", names(subfolder_info)[org], "_", scenario_name, ".jpg")), width = 200, height = 120, units = "mm", res = 1200)
+    par(mar = c(6, 4, 1, 1), mfrow = c(1, 1))
+    presence_barplot <- barplot(height = word_presence_mean, xaxt = "n", ylab = "Presence (%)") 
+    text(presence_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.7)
+    dev.off()
+    
+    # wordcloud figure
+    jpeg(filename = here::here("TextAnalysis", paste0("top19_wordcloud_", names(subfolder_info)[org], "_mean_presence_grays", "_", scenario_name, ".jpg")), width = 200, height = 200, units = "mm", res = 1200)
+    par(mar = c(0.1, 0.1, 0.1, 0.1), mfrow = c(1, 1))
+    set.seed(123)
+    wordcloud(
+      words = xlabels, freq = word_presence_mean, rot.per = 0,
+      scale = c(1.5, 0.5),
+      min.freq = 1,
+      random.order = F,  
+      colors = grDevices::gray.colors(10, rev = TRUE), 
+      use.r.layout = T
+    )
+    text(0.1, 0.8, scenario_name)
+    dev.off()
+    
+    jpeg(filename = here::here("TextAnalysis", paste0("top19_wordcloud_", names(subfolder_info)[org], "_mean_presence_black", "_", scenario_name, ".jpg")), width = 200, height = 200, units = "mm", res = 1200)
+    par(mar = c(0.1, 0.1, 0.1, 0.1), mfrow = c(1, 1))
+    set.seed(123)
+    wordcloud(
+      words = xlabels, freq = word_presence_mean, rot.per = 0,
+      scale = c(1.5, 0.5), 
+      min.freq = 1,
+      random.order = F,  
+      use.r.layout = T
+    )
+    text(0.1, 0.8, scenario_name)
+    dev.off()
+  }
+}
+
+# Define keyword ---------------------------------------------------------------
+working_path <- here::here("StockAssessment")
+subfolder_path_all <- list.dirs(path = working_path, full.names = TRUE, recursive = FALSE)
+subfolder_name_all <- list.dirs(path = working_path, full.names = FALSE, recursive = FALSE)
+
+subfolder_info <- list(
+  grep("Australia", subfolder_name_all),
+  grep("ICES", subfolder_name_all),
+  grep("NOAA", subfolder_name_all), 
+  1:length(subfolder_name_all)
+)
+
+names(subfolder_info) <- c("Australia", "ICES", "NOAA", "All")
+
+keyword <- c(
+  "biomass|b", "abundance",
+  "spawning biomass|sb", "spawning stock biomass|ssb", "mature biomass", "spawners", "effective spawning output",
+  "unfished", "virgin", "initial equilibrium", "unfished equilibrium",
+  "recruitment",
+  "recruits", "recruit", "age 0 fish", "age 1 fish",
+  "catch", "harvest", "total removals",
+  "catch per unit effort|cpue", "catch rate", "index of abundance", "catch per effort", "fishing success",
+  "landings", "retained catch",
+  "spawner per recruit|spr", "spawning potential ratio",
+  "maximum sustainable yield|msy",
+  "instantaneous total mortality rate|z",
+  "fishing mortality|f", "instantaneous fishing mortality rate", "harvest rate", "exploitation rate", "finite fishing mortality", "apical f",
+  "fishing mortality at maximum sustainable yield|fmsy",
+  "mass",
+  "length composition", "length frequency", "length observation", "size frequency", "size composition",
+  "age composition", "age frequency", "age observation",
+  "projection",
+  "sex", "gender",
+  "plus group"
+)
+
+xlabels <- c(
+  "Biomass", "Abundance",
+  "Spawning biomass", "Spawning stock biomass", "Mature biomass", "Spawners", "Effective spawning output",
+  "Unfished", "Virgin", "Initial equilibrium", "Unfished equilibrium",
+  "Recruitment",
+  "Recruits", "Recruit", "Age 0 fish", "Age 1 fish",
+  "Catch", "Harvest", "Total removals",
+  "Catch per unit effort", "Catch rate", "Index of abundance", "Catch per effort", "Fishing success",
+  "Landings", "Retained catch",
+  "Spawner per recruit", "Spawning potential ratio",
+  "Maximum sustainable yield",
+  "Instantaneous total mortality rate",
+  "Fishing mortality", "Instantaneous fishing mortality rate", "Harvest rate", "Exploitation rate", "Finite fishing mortality", "Apical f",
+  "Fishing mortality at maximum sustainable yield",
+  "Mass",  
+  "Length composition", "Length frequency", "Length observation", "Size frequency", "Size composition",
+  "Age composition", "Age frequency", "Age observation",
+  "Projection", 
+  "Sex", "Gender",
+  "Plus group"
+)
+
+run_text_mining(keyword = keyword, xlabels = xlabels, working_path = working_path, 
+                subfolder_path_all = subfolder_path_all, subfolder_name_all = subfolder_name_all, 
+                subfolder_info = subfolder_info, scenario_name = "A")
+
+keyword <- c(
+  "biomass|b|abundance",
+  "spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output",
+  "unfished|virgin|initial equilibrium|unfished equilibrium",
+  "recruitment",
+  "recruits|recruit|age 0 fish|age 1 fish",
+  "catch|harvest|total removals",
+  "catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success",
+  "landings|retained catch",
+  "spawner per recruit|spawning potential ratio|spr",
+  "maximum sustainable yield|msy",
+  "instantaneous total mortality rate|z",
+  "fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f",
+  "fishing mortality at maximum sustainable yield|fmsy",
+  "mass",
+  "length composition|length frequency|length observation|size frequency|size composition",
+  "age composition|age frequency|age observation",
+  "projection",
+  "sex|gender",
+  "plus group"
+)
+
+xlabels <- c(
+  "Biomass",
+  "Spawning biomass",
+  "Unfished",
+  "Recruitment",
+  "Recruit(s)",
+  "Catch",
+  "Catch per unit effort",
+  "Landings",
+  "Spawner per recruit",
+  "Maximum sustainable yield",
+  "Instantaneous total mortality rate",
+  "Fishing mortality",
+  "Fishing mortality at maximum sustainable yield",
+  "Mass",
+  "Length composition",
+  "Age composition",
+  "Projection",
+  "Sex",
+  "Plus group"
+)
+
+run_text_mining(keyword = keyword, xlabels = xlabels, working_path = working_path, 
+                subfolder_path_all = subfolder_path_all, subfolder_name_all = subfolder_name_all, 
+                subfolder_info = subfolder_info, scenario_name = "B")
+
+
+jpeg(filename = here::here("TextAnalysis", "top19_wordcloud_All_mean_presence_grays_AB.jpg"), 
+     width = 200, height = 120, units = "mm", res = 1200)
+before_img <-  grid::rasterGrob(as.raster(jpeg::readJPEG(here::here("TextAnalysis", 
+                                                              "top19_wordcloud_All_mean_presence_grays_A.jpg"))), 
+                          interpolate = FALSE)
+after_img <-  grid::rasterGrob(as.raster(jpeg::readJPEG(here::here("TextAnalysis", 
+                                                             "top19_wordcloud_All_mean_presence_grays_B.jpg"))), 
+                         interpolate = FALSE)
+gridExtra::grid.arrange(before_img, after_img, ncol = 2)
+dev.off()
+
+jpeg(filename = here::here("TextAnalysis", "top19_wordcloud_All_mean_presence_black_AB.jpg"), 
+     width = 200, height = 120, units = "mm", res = 1200)
+before_img <-  grid::rasterGrob(as.raster(jpeg::readJPEG(here::here("TextAnalysis", 
+                                                              "top19_wordcloud_All_mean_presence_black_A.jpg"))), 
+                          interpolate = FALSE)
+after_img <-  grid::rasterGrob(as.raster(jpeg::readJPEG(here::here("TextAnalysis", 
+                                                             "top19_wordcloud_All_mean_presence_black_B.jpg"))), 
+                         interpolate = FALSE)
+gridExtra::grid.arrange(before_img, after_img, ncol = 2)
+dev.off()
diff --git a/TextAnalysis/top19_barplot_All_A.jpg b/TextAnalysis/top19_barplot_All_A.jpg
new file mode 100644
index 0000000..3780be8
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diff --git a/TextAnalysis/top19_barplot_All_B.jpg b/TextAnalysis/top19_barplot_All_B.jpg
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index 0000000..34bdd88
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diff --git a/TextAnalysis/top19_barplot_Australia_A.jpg b/TextAnalysis/top19_barplot_Australia_A.jpg
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index 0000000..2b8b9be
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diff --git a/TextAnalysis/top19_barplot_Australia_B.jpg b/TextAnalysis/top19_barplot_Australia_B.jpg
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index 0000000..aad4ffe
Binary files /dev/null and b/TextAnalysis/top19_barplot_Australia_B.jpg differ
diff --git a/TextAnalysis/top19_barplot_ICES_A.jpg b/TextAnalysis/top19_barplot_ICES_A.jpg
new file mode 100644
index 0000000..72adb21
Binary files /dev/null and b/TextAnalysis/top19_barplot_ICES_A.jpg differ
diff --git a/TextAnalysis/top19_barplot_ICES_B.jpg b/TextAnalysis/top19_barplot_ICES_B.jpg
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index 0000000..5c48fbc
Binary files /dev/null and b/TextAnalysis/top19_barplot_ICES_B.jpg differ
diff --git a/TextAnalysis/top19_barplot_NOAA_A.jpg b/TextAnalysis/top19_barplot_NOAA_A.jpg
new file mode 100644
index 0000000..66b51f7
Binary files /dev/null and b/TextAnalysis/top19_barplot_NOAA_A.jpg differ
diff --git a/TextAnalysis/top19_barplot_NOAA_B.jpg b/TextAnalysis/top19_barplot_NOAA_B.jpg
new file mode 100644
index 0000000..7ba2f66
Binary files /dev/null and b/TextAnalysis/top19_barplot_NOAA_B.jpg differ
diff --git a/TextAnalysis/top19_frequency_All_A.csv b/TextAnalysis/top19_frequency_All_A.csv
new file mode 100644
index 0000000..787c887
--- /dev/null
+++ b/TextAnalysis/top19_frequency_All_A.csv
@@ -0,0 +1,136 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BightRedfish2019.pdf",81,16,28,10,0,0,0,2,6,0,0,36,0,0,0,0,29,8,0,39,4,0,0,0,4,0,1,1,2,0,307,0,0,0,0,0,0,0,11,8,0,0,0,6,0,0,0,1,1,0
+"2","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BlueGrenadier2021.pdf",89,5,40,6,0,0,0,3,11,0,0,32,0,0,0,0,41,10,0,22,11,0,0,0,11,3,0,0,1,0,412,0,0,0,0,0,0,9,15,0,0,0,0,0,0,1,0,9,1,1
+"3","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/DeepwaterFlatheadPreliminary2019.pdf",82,24,23,6,0,0,0,1,6,0,0,22,0,0,0,0,31,9,0,14,5,1,0,0,4,0,1,1,3,0,257,0,0,0,0,0,0,0,12,2,0,0,0,6,0,0,1,1,0,1
+"4","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Gummy-assessment-report-Dec2020.pdf",48,15,2,0,7,0,0,4,0,0,0,4,0,0,0,0,34,2,0,122,0,4,0,0,5,0,0,0,3,0,391,0,0,0,0,0,0,0,1,15,0,0,0,13,1,1,0,11,0,7
+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",159,35,40,56,0,0,0,8,0,1,1,286,1,0,0,0,153,16,0,76,35,0,0,0,16,3,2,2,5,0,954,0,0,0,0,0,0,1,59,12,0,0,1,2,0,0,4,1,0,0
+"6","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongWest2018.pdf",84,26,20,14,0,0,0,4,1,0,0,41,0,0,0,0,78,9,0,30,24,2,0,0,11,0,1,1,4,0,453,0,0,0,0,0,0,0,18,19,0,0,0,3,0,0,0,1,1,0
+"7","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Macquarie-Island-Patagonian-Toothfish-2019-Stock-Assessment-Report.pdf",121,33,72,28,0,0,0,22,0,0,2,68,5,3,0,0,122,9,0,3,1,0,0,0,0,0,0,0,2,13,879,0,1,0,0,0,0,1,28,14,0,0,0,0,0,0,5,11,40,1
+"8","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Redfish2020.pdf",48,7,34,6,0,0,0,1,5,0,0,57,0,0,0,0,33,0,0,30,6,0,0,0,11,1,0,0,0,0,276,0,0,0,0,0,0,1,16,5,0,0,0,5,0,1,0,1,0,1
+"9","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SchoolWhiting2020.pdf",144,5,70,48,0,0,0,11,0,0,0,168,1,0,0,0,177,12,0,156,8,0,0,0,4,1,4,2,2,0,726,0,0,0,0,0,0,0,55,36,0,0,0,4,0,0,1,2,1,0
+"10","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SilverWarehouPreliminary2018.pdf",28,11,16,3,0,0,0,2,3,0,0,24,0,0,0,0,6,0,0,22,1,0,0,0,2,0,1,0,0,0,198,0,0,0,0,0,0,0,14,3,0,0,0,2,0,0,0,0,0,0
+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",90,8,31,0,0,0,0,0,2,0,0,35,5,8,0,0,53,30,0,45,0,0,0,0,0,0,0,0,29,0,508,0,0,0,0,0,0,8,0,3,0,0,0,0,0,0,0,0,0,0
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",99,26,55,10,0,0,0,0,9,0,0,127,0,2,0,0,144,10,0,26,7,0,0,0,6,2,1,1,12,5,600,0,0,0,0,0,0,0,21,16,0,0,0,2,0,0,0,2,1,0
+"13","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021-sardine-fishery-stock-assessment.pdf",289,22,142,4,0,1,0,6,0,0,2,50,5,0,0,2,136,27,0,12,0,1,0,0,1,0,0,0,0,31,1182,0,1,4,0,0,0,33,0,6,0,1,3,14,0,0,1,23,0,3
+"14","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021 assessment of the status of the West Coast Demersal Scalefis.pdf",340,57,27,1,0,0,0,11,0,4,0,101,2,9,0,1,294,29,0,243,7,16,0,0,3,35,66,12,202,1,1560,0,5,7,0,0,35,0,1,1,0,0,1,29,1,0,6,13,0,2
+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",32,9,0,0,0,0,0,0,0,0,0,14,6,4,0,0,67,40,0,93,8,0,0,0,0,0,0,0,0,0,268,0,3,14,0,0,0,2,0,0,0,0,0,0,0,0,0,2,0,0
+"16","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Fisheries Research Report 319_ Resource Assessment Report for Aus.pdf",189,35,34,3,0,1,0,5,0,0,0,162,5,18,0,0,316,41,0,27,35,2,0,0,14,0,72,30,141,9,1539,0,11,1,0,0,12,1,15,4,0,0,1,29,0,0,1,10,0,0
+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",244,7,0,0,0,0,0,0,0,0,0,20,1,0,0,0,20,21,0,0,0,0,0,0,0,0,0,0,52,3,384,0,0,1,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",91,14,0,0,0,7,0,17,0,0,1,50,5,2,0,0,268,18,0,85,39,2,0,0,2,0,0,0,0,5,686,2,0,11,0,0,0,1,0,4,0,1,0,0,0,0,0,31,0,1
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",37,7,4,2,0,0,0,6,8,0,0,44,2,5,0,0,58,4,0,38,2,0,0,0,0,1,0,0,0,6,264,0,0,0,0,0,0,1,0,2,0,0,0,0,0,0,1,1,0,0
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",571,235,35,1,0,3,0,0,2,0,0,46,14,4,0,0,555,15,0,277,11,11,0,0,0,0,0,0,0,6,2254,0,0,0,0,0,0,11,0,4,0,4,0,1,0,0,3,35,0,0
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",339,13,88,0,0,0,0,6,2,0,0,114,0,4,0,0,182,32,0,71,21,5,0,0,0,0,0,0,0,12,1330,0,1,0,0,0,0,0,0,0,0,0,0,15,0,0,1,10,0,2
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",89,19,0,0,0,5,0,16,0,0,1,40,5,1,0,0,267,17,0,92,50,2,0,0,2,0,0,0,1,9,664,2,0,15,0,0,0,1,0,9,0,2,0,0,0,0,0,31,0,1
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",200,16,32,2,0,1,0,15,6,0,0,50,1,0,0,0,226,122,0,0,63,0,0,0,3,5,0,0,14,10,879,0,3,0,0,0,3,0,0,0,0,0,0,7,1,0,0,5,0,0
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",273,21,0,0,0,0,0,1,39,0,0,39,2,0,0,0,226,167,0,0,42,1,0,0,6,1,0,0,30,2,1210,0,6,0,0,0,0,0,0,0,0,0,0,0,3,0,4,5,2,0
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",138,6,5,0,0,1,0,9,3,0,0,33,1,0,0,0,46,25,0,0,5,1,0,0,0,0,0,0,0,1,375,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",308,31,5,0,0,0,0,12,9,0,0,32,1,1,0,0,75,106,0,0,19,7,0,0,0,2,0,0,9,0,463,0,6,0,0,0,0,0,0,0,0,0,6,0,0,0,6,6,0,0
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+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",63,17,11,1,0,0,0,14,3,0,0,12,1,1,0,0,48,88,0,0,12,1,0,0,0,3,1,0,2,0,508,0,0,0,0,0,0,3,4,1,0,0,1,2,0,0,5,7,0,0
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+"132","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/agenda-item-d-3.pdf",240,41,44,47,0,1,0,1,2,4,0,76,10,1,1,3,52,32,0,6,0,10,0,0,53,0,12,0,11,32,882,0,1,6,0,2,3,0,2,0,0,0,0,13,0,0,1,14,2,0
+"133","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SAC-11-07-MTG_Yellowfin tuna benchmark assessment 2019.pdf",96,81,46,0,0,0,0,2,16,1,0,47,2,2,0,0,81,5,0,18,3,34,0,0,0,10,0,0,52,4,872,0,0,0,0,0,18,1,16,5,0,0,7,0,1,0,2,4,0,0
+"134","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SC14-SA-WP-11 ISC18 Shortfin Mako Stock Assessment.pdf",32,107,6,2,0,0,0,21,16,18,0,79,3,7,0,0,163,4,0,110,0,0,0,0,2,0,31,2,99,15,751,0,1,0,0,0,4,0,18,2,0,1,12,0,0,0,3,12,1,4
+"Sum",NA,NA,25403,4882,5840,3148,59,119,1,1344,662,88,98,7700,622,434,11,23,18453,4622,75,4969,1134,458,6,3,10611,319,1874,196,7140,1556,143697,15,644,388,0,27,2562,135,1525,647,4,51,360,993,151,5,859,1142,186,150
diff --git a/TextAnalysis/top19_frequency_All_B.csv b/TextAnalysis/top19_frequency_All_B.csv
new file mode 100644
index 0000000..f7e5b48
--- /dev/null
+++ b/TextAnalysis/top19_frequency_All_B.csv
@@ -0,0 +1,136 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
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+"2","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BlueGrenadier2021.pdf",945,56,14,32,40,72,38,14,0,1,0,1440,0,9,16,1,0,11,1
+"3","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/DeepwaterFlatheadPreliminary2019.pdf",647,44,7,22,25,57,21,4,2,3,0,1131,0,0,17,9,1,2,1
+"4","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Gummy-assessment-report-Dec2020.pdf",1207,9,4,4,5,98,126,5,0,3,0,1780,0,0,18,20,0,12,7
+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",2226,134,9,286,309,296,124,19,4,5,0,4009,0,1,77,3,4,4,0
+"6","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongWest2018.pdf",949,49,5,41,51,126,65,11,2,4,0,1661,0,0,41,8,0,4,0
+"7","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Macquarie-Island-Patagonian-Toothfish-2019-Stock-Assessment-Report.pdf",1485,82,22,68,91,169,10,0,0,2,13,2918,0,1,49,2,5,64,1
+"8","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Redfish2020.pdf",685,49,6,57,62,51,45,12,0,0,0,1254,0,1,24,6,0,1,1
+"9","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SchoolWhiting2020.pdf",2028,164,11,168,181,290,172,5,6,2,0,4139,0,0,95,22,1,9,0
+"10","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SilverWarehouPreliminary2018.pdf",355,20,5,24,26,12,24,2,1,0,0,681,0,0,18,3,0,0,0
+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",974,33,2,35,66,106,53,0,0,29,0,1701,0,8,3,0,0,0,0
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",1232,113,9,127,142,222,40,8,2,12,5,2686,0,0,44,15,0,4,0
+"13","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021-sardine-fishery-stock-assessment.pdf",1531,148,6,50,70,222,19,1,0,0,31,3456,0,33,10,24,1,35,3
+"14","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021 assessment of the status of the West Coast Demersal Scalefis.pdf",3209,31,15,101,147,552,288,38,79,202,1,5366,35,0,3,49,6,19,2
+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",633,2,0,14,28,114,110,0,0,0,0,1036,0,2,0,0,0,2,0
+"16","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Fisheries Research Report 319_ Resource Assessment Report for Aus.pdf",2265,42,5,162,209,453,105,14,104,141,9,4750,12,1,20,34,1,22,0
+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",1144,1,0,20,22,197,0,0,0,52,3,1473,0,0,2,0,0,0,0
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",1369,14,17,50,79,334,146,2,0,0,5,2601,0,1,5,0,0,35,1
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",589,8,14,44,52,84,47,1,0,0,6,914,0,1,2,0,1,1,0
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",5587,42,2,46,141,695,320,0,0,0,6,7468,0,11,8,3,3,50,0
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",1983,91,8,114,130,325,115,0,0,0,12,4721,0,0,0,15,1,11,2
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",1349,11,16,40,65,333,167,2,0,1,9,2589,0,1,11,0,0,35,1
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",1660,40,22,50,52,448,171,8,0,14,10,3618,3,0,2,15,0,7,0
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",2178,18,41,39,42,479,71,7,0,30,2,3463,0,0,0,4,4,10,0
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",862,9,12,33,34,115,12,0,0,0,1,1228,0,0,0,0,0,1,1
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",1350,14,21,32,47,231,61,2,0,9,0,1659,0,0,6,0,6,6,0
+"27","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/BWF_StockAssessmentReport_2019_FINAL.pdf",2322,51,38,67,74,281,75,0,0,44,1,4973,0,1,149,50,4,26,0
+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",1030,22,17,12,14,157,29,3,1,2,0,1907,0,3,20,4,5,7,0
+"29","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Eastern king prawn stock assessment report 2020.pdf",881,32,11,42,69,221,93,0,0,39,4,1781,0,0,43,0,0,6,0
+"30","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Grey_mackerel_stock_assessment_report_2019_final.pdf",885,8,26,39,41,244,61,0,0,28,0,1739,0,0,1,1,0,4,0
+"31","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/King threadfin stock assessment 2020.pdf",1666,90,34,35,52,380,121,6,5,12,3,3765,0,0,25,9,1,9,1
+"32","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mudcrab Catch-MSY Final.pdf",676,4,8,2,7,152,10,0,0,31,1,990,0,0,0,0,0,0,0
+"33","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mullet_stock_assessment_report_2018.pdf",886,10,22,27,27,240,89,16,0,20,0,1735,1,0,6,6,0,24,0
+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",913,31,17,25,27,165,32,3,1,2,0,1947,0,0,17,5,3,16,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",1355,44,22,19,21,271,91,24,0,0,2,3207,0,1,26,13,2,36,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",1742,22,32,19,31,607,311,3,0,21,11,4504,0,0,6,5,0,2,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",1452,85,71,50,63,365,154,4,0,6,4,3444,1,0,15,6,11,9,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",670,33,31,31,35,208,64,0,0,8,1,1491,0,0,1,0,0,9,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",1317,94,27,19,26,280,79,5,0,5,0,3278,0,1,18,6,0,15,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",1575,121,40,21,24,384,95,34,0,22,0,4852,0,1,17,5,0,25,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",1101,42,27,30,35,255,109,1,0,5,3,1763,0,0,0,0,1,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",858,46,30,4,7,239,70,1,0,14,0,1474,0,0,17,7,4,3,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",918,90,29,100,102,274,50,4,0,26,7,1957,2,0,2,2,1,4,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",809,13,12,60,71,213,70,1,0,39,8,1379,0,0,0,0,1,2,0
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+"46","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",18719,719,3,514,649,2169,153,1543,38,820,37,26921,428,7,59,54,8,57,21
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+"62","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIskate.pdf",152,1,0,0,0,28,0,0,0,0,0,170,0,0,0,0,4,0,0
+"63","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/EBSpcod.pdf",10350,215,10,135,183,499,237,20,8,14,29,14839,2,1,85,61,12,2,0
+"64","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/EBSPollock.pdf",3362,91,3,89,135,311,35,11,7,23,24,4802,3,21,9,37,9,11,0
+"65","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/GOAdeepflat.pdf",1381,32,4,43,57,149,5,0,5,5,8,2710,0,0,25,12,3,17,0
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+"67","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/PIRKC.pdf",1056,2,1,21,25,56,1,8,1,10,10,1245,0,1,19,0,0,24,0
+"68","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/sablefish.pdf",6892,236,7,257,309,490,156,18,1,9,27,10617,0,0,49,84,23,20,4
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+"70","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_FLD_GMGB_RPT.pdf",87,2,0,1,1,17,0,3,0,6,0,213,2,0,0,0,0,0,0
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+"72","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_Herring_Unit_Report.pdf",95,14,0,12,16,18,0,0,0,1,0,227,0,0,0,0,6,0,0
+"73","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_HKR_SNEMA_RPT.pdf",97,3,0,1,1,13,0,4,0,5,0,200,4,0,0,0,0,0,0
+"74","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_HKS_GM_RPT.pdf",71,2,0,2,2,13,0,2,0,1,0,205,0,0,0,0,0,0,0
+"75","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_scallop_unit_maindoc_rev.pdf",105,8,0,5,11,2,0,3,0,12,0,149,6,0,1,0,0,0,0
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+"78","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2021_summer_flounder_MTA_report.pdf",220,59,2,21,32,27,0,14,0,24,0,400,7,0,0,1,5,3,0
+"79","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/4d_SkateAssessmentUpdate_July_2020.pdf",234,0,0,0,0,14,1,1,0,9,0,416,1,0,0,0,0,0,0
+"80","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/Bluefish_2021_Assesssment_Update_v4.pdf",157,40,1,17,19,23,0,12,0,16,0,291,6,0,0,0,2,0,0
+"81","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/crd0609a.pdf",4033,123,5,76,227,196,38,336,0,49,45,6593,18,0,15,6,5,12,1
+"82","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/Georges_Bank_Winter_Flounder_Update_2020_09_18_111359.pdf",155,29,0,4,12,18,0,4,0,4,0,357,2,0,2,2,2,0,0
+"83","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/Golden_Tile_Assessment_MT2021_2.pdf",181,53,1,14,17,13,20,27,0,28,0,413,13,0,6,0,1,0,0
+"84","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/noaa_24818_DS1.pdf",597,18,0,4,20,110,1,39,0,0,2,1101,0,0,1,3,0,0,0
+"85","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/TSR_EGB_Haddock_2021_meeting_draft.pdf",399,6,0,5,8,71,0,20,0,0,9,633,0,0,5,2,0,0,0
+"86","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/2011Dick3.pdf",2641,133,52,51,65,315,37,133,61,80,15,6248,8,0,125,20,0,40,0
+"87","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/agenda-item-h-5-attachment-9-2.pdf",3625,80,82,65,90,272,26,99,46,41,22,6107,4,1,35,15,2,15,1
+"88","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Blue-Deacon_Assessment_2017_Final.pdf",8666,68,77,139,174,670,198,253,52,56,35,14756,9,0,79,51,13,77,0
+"89","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/c-6-attachment-1-full-assessment-electronic-only-status-of-lingcod-ophiodon-elongatus-along-the-northern-u-s-west-coast-in-2021.pdf",2978,67,70,40,56,234,61,152,24,23,11,6353,1,0,27,26,3,432,1
+"90","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Cabezon-2019_FINAL.pdf",6248,267,71,248,318,483,103,108,159,79,16,10513,16,1,117,34,14,46,0
+"91","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/California Scorpionfish.pdf",2467,50,19,69,88,305,61,66,24,3,16,5764,0,0,64,11,3,48,1
+"92","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/dover_sole_december_2021_final.pdf",2667,127,71,54,66,157,22,80,37,13,3,4979,0,0,59,19,6,109,2
+"93","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/g-5-attachment-3-draft-full-assessment-of-status-of-the-pacific-spiny-dogfish-shark-resource-off-the-continental-u-s-pacific-coast-in-2021-electronic-only.pdf",2119,32,32,38,80,297,9,113,46,22,2,4935,0,0,60,11,0,29,0
+"94","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Gopher_BlackandYellow_Assessment_2019-1.pdf",2703,16,19,90,111,310,38,109,22,2,11,5330,0,0,79,14,0,9,1
+"95","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/hake-assessment-post-srg-final_20210303.pdf",4432,228,2,189,250,574,26,30,81,51,10,7230,3,2,3,45,5,10,0
+"96","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Longnose skate 2019_FINAL.pdf",2660,111,34,43,75,317,26,176,56,26,3,4696,0,0,62,20,0,16,0
+"97","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/PacificOceanPerch2017_Assessment_Final.pdf",1948,11,32,64,85,159,42,62,21,9,1,4307,0,0,17,20,2,18,0
+"98","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/sablefish_20191022.pdf",5976,140,40,407,524,375,49,109,45,16,60,10656,2,2,31,24,5,26,11
+"99","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/WidowAssessment2015.pdf",2449,109,29,101,125,258,9,227,28,23,13,5768,4,0,64,41,4,29,0
+"100","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Yelloweye rockfish 2017.pdf",2243,51,30,68,124,296,40,60,43,22,1,5459,0,1,77,40,0,19,0
+"101","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Yellowtail rockfish 2017.pdf",2741,7,19,44,80,223,44,62,23,3,0,5953,0,0,23,13,2,19,0
+"102","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/NMFS-PIFSC-60.pdf",2013,11,0,7,11,407,0,2,173,2,16,3107,0,0,22,0,0,1,0
+"103","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/noaa_17252_DS1.pdf",3076,0,0,0,0,522,484,0,0,186,3,5303,7,1,1,0,12,3,0
+"104","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/noaa_20062_DS1.pdf",1568,14,0,11,17,242,0,4,139,2,14,2389,0,1,13,0,0,3,0
+"105","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/noaa_21164_DS1.pdf",3752,4,0,2,2,628,178,6,0,519,4,6004,0,0,1,0,25,0,0
+"106","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SA-WP-06-[SP-alb-assessment] Rev 1.pdf",1221,88,3,63,70,88,50,0,0,45,6,2723,8,0,34,3,0,5,1
+"107","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC14-SA-WP-08 Silky shark stock assessment (1).pdf",2319,42,10,35,37,304,320,0,0,18,15,4382,6,0,43,0,0,25,0
+"108","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC15-SA-WP-05 SKJ-Assessment REV2 (1).pdf",1601,190,6,55,68,124,73,0,0,74,5,3976,28,0,60,0,5,5,1
+"109","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC15-SA-WP-06 Oceanic whitetip shark_assessment.pdf",2044,266,4,27,41,306,90,0,0,81,1,2742,27,0,5,0,0,11,0
+"110","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/05.-Traditional-Interim-assessment-report-RS-002-1.pdf",213,0,0,0,0,33,6,1,0,0,2,402,0,0,1,0,0,0,0
+"111","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/08b.-SEDAR61_2021IA_Final.pdf",212,0,0,1,1,39,11,8,0,0,0,430,0,0,0,0,3,0,0
+"112","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2019_WHM_SA_ENG.pdf",1118,18,7,14,14,110,60,10,0,96,15,1690,39,0,5,0,6,12,0
+"113","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2020_ALB_ENG.pdf",3153,0,3,4,5,159,219,1,0,149,52,3073,58,0,8,1,6,11,0
+"114","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2021_WBFT_SA_ENG.pdf",721,25,13,43,54,30,5,0,0,0,11,967,0,0,15,2,4,0,0
+"115","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/Atl_Blacknose_SAR.pdf",9034,56,47,34,56,660,369,144,4,302,23,13655,185,0,4,15,38,25,1
+"116","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/B-8a-Gray_triggerfish_interim_9102020.pdf",219,0,0,0,0,30,3,5,0,0,0,343,0,0,0,0,2,0,0
+"117","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/Dusky_update_report_2016.pdf",891,5,22,21,33,56,8,12,2,59,2,1663,30,1,5,4,6,3,1
+"118","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/KGM_GOM_SA_08282020_final-revision_3.pdf",791,97,26,35,49,39,17,95,0,5,0,1655,2,0,22,4,1,10,0
+"119","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S23_SAR_complete_and_final.pdf",4465,225,13,27,44,335,19,205,326,59,24,9226,29,0,4,10,43,20,0
+"120","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S28UpdateSAR_V2.pdf",1745,117,31,64,119,55,26,99,20,2,0,3494,1,0,56,29,6,8,2
+"121","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S34_ATSH_SAR.pdf",4005,17,50,28,38,338,101,38,3,316,19,7862,224,0,10,11,109,7,0
+"122","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S51_FINAL_SAR_0.pdf",4085,124,22,75,120,137,67,309,27,34,53,11298,14,0,91,7,25,25,0
+"123","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S52_Final_SAR_v2.pdf",3443,136,32,154,247,129,83,108,48,37,108,11099,8,0,41,142,17,2,2
+"124","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S57_Final_SAR.pdf",3514,35,72,40,75,104,28,194,17,45,58,4507,20,0,110,0,8,25,1
+"125","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S64_SAR_FINAL.pdf",5816,268,62,136,204,198,109,340,96,47,81,11390,23,1,143,23,17,38,3
+"126","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S67_Final_SAR.pdf",3248,194,31,114,186,174,107,145,47,65,29,6897,31,0,50,72,16,10,1
+"127","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S72_SAR_FINAL.pdf",3539,326,36,83,124,150,68,178,6,42,93,8354,20,0,204,59,13,21,4
+"128","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SA BSB 2018.pdf",3137,171,10,49,109,80,25,145,12,230,5,3782,103,0,32,38,37,6,1
+"129","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR_60_SA_Red_Porgy_SAR_4.9.2020.pdf",2825,239,15,57,147,103,26,193,19,257,13,4900,118,0,43,40,42,7,1
+"130","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR65_FullSAR_12.8.2020_V3.pdf",8869,46,52,154,243,515,107,125,4,318,53,11823,263,1,201,1,166,80,0
+"131","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SMA_ASS_ENG.pdf",1498,13,5,10,26,200,75,11,0,249,12,2043,49,0,21,0,1,16,0
+"132","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/agenda-item-d-3.pdf",2168,64,8,76,112,156,16,54,12,11,32,3675,3,0,8,46,1,22,0
+"133","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SAC-11-07-MTG_Yellowfin tuna benchmark assessment 2019.pdf",1665,70,20,47,65,170,59,10,0,52,4,3325,18,1,33,1,2,6,0
+"134","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SC14-SA-WP-11 ISC18 Shortfin Mako Stock Assessment.pdf",1461,7,55,79,110,241,123,3,33,99,15,3421,4,0,37,0,3,34,4
+"Sum",NA,NA,309435,9341,2182,7700,10502,31981,8974,11000,2088,7140,1556,537732,2562,135,3603,1824,859,2334,150
diff --git a/TextAnalysis/top19_frequency_Australia_A.csv b/TextAnalysis/top19_frequency_Australia_A.csv
new file mode 100644
index 0000000..8b74536
--- /dev/null
+++ b/TextAnalysis/top19_frequency_Australia_A.csv
@@ -0,0 +1,47 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
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+"3","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/DeepwaterFlatheadPreliminary2019.pdf",82,24,23,6,0,0,0,1,6,0,0,22,0,0,0,0,31,9,0,14,5,1,0,0,4,0,1,1,3,0,257,0,0,0,0,0,0,0,12,2,0,0,0,6,0,0,1,1,0,1
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+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",159,35,40,56,0,0,0,8,0,1,1,286,1,0,0,0,153,16,0,76,35,0,0,0,16,3,2,2,5,0,954,0,0,0,0,0,0,1,59,12,0,0,1,2,0,0,4,1,0,0
+"6","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongWest2018.pdf",84,26,20,14,0,0,0,4,1,0,0,41,0,0,0,0,78,9,0,30,24,2,0,0,11,0,1,1,4,0,453,0,0,0,0,0,0,0,18,19,0,0,0,3,0,0,0,1,1,0
+"7","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Macquarie-Island-Patagonian-Toothfish-2019-Stock-Assessment-Report.pdf",121,33,72,28,0,0,0,22,0,0,2,68,5,3,0,0,122,9,0,3,1,0,0,0,0,0,0,0,2,13,879,0,1,0,0,0,0,1,28,14,0,0,0,0,0,0,5,11,40,1
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+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",90,8,31,0,0,0,0,0,2,0,0,35,5,8,0,0,53,30,0,45,0,0,0,0,0,0,0,0,29,0,508,0,0,0,0,0,0,8,0,3,0,0,0,0,0,0,0,0,0,0
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",99,26,55,10,0,0,0,0,9,0,0,127,0,2,0,0,144,10,0,26,7,0,0,0,6,2,1,1,12,5,600,0,0,0,0,0,0,0,21,16,0,0,0,2,0,0,0,2,1,0
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+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",32,9,0,0,0,0,0,0,0,0,0,14,6,4,0,0,67,40,0,93,8,0,0,0,0,0,0,0,0,0,268,0,3,14,0,0,0,2,0,0,0,0,0,0,0,0,0,2,0,0
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+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",244,7,0,0,0,0,0,0,0,0,0,20,1,0,0,0,20,21,0,0,0,0,0,0,0,0,0,0,52,3,384,0,0,1,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",91,14,0,0,0,7,0,17,0,0,1,50,5,2,0,0,268,18,0,85,39,2,0,0,2,0,0,0,0,5,686,2,0,11,0,0,0,1,0,4,0,1,0,0,0,0,0,31,0,1
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",37,7,4,2,0,0,0,6,8,0,0,44,2,5,0,0,58,4,0,38,2,0,0,0,0,1,0,0,0,6,264,0,0,0,0,0,0,1,0,2,0,0,0,0,0,0,1,1,0,0
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",571,235,35,1,0,3,0,0,2,0,0,46,14,4,0,0,555,15,0,277,11,11,0,0,0,0,0,0,0,6,2254,0,0,0,0,0,0,11,0,4,0,4,0,1,0,0,3,35,0,0
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",339,13,88,0,0,0,0,6,2,0,0,114,0,4,0,0,182,32,0,71,21,5,0,0,0,0,0,0,0,12,1330,0,1,0,0,0,0,0,0,0,0,0,0,15,0,0,1,10,0,2
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",89,19,0,0,0,5,0,16,0,0,1,40,5,1,0,0,267,17,0,92,50,2,0,0,2,0,0,0,1,9,664,2,0,15,0,0,0,1,0,9,0,2,0,0,0,0,0,31,0,1
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",200,16,32,2,0,1,0,15,6,0,0,50,1,0,0,0,226,122,0,0,63,0,0,0,3,5,0,0,14,10,879,0,3,0,0,0,3,0,0,0,0,0,0,7,1,0,0,5,0,0
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",273,21,0,0,0,0,0,1,39,0,0,39,2,0,0,0,226,167,0,0,42,1,0,0,6,1,0,0,30,2,1210,0,6,0,0,0,0,0,0,0,0,0,0,0,3,0,4,5,2,0
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",138,6,5,0,0,1,0,9,3,0,0,33,1,0,0,0,46,25,0,0,5,1,0,0,0,0,0,0,0,1,375,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",308,31,5,0,0,0,0,12,9,0,0,32,1,1,0,0,75,106,0,0,19,7,0,0,0,2,0,0,9,0,463,0,6,0,0,0,0,0,0,0,0,0,6,0,0,0,6,6,0,0
+"27","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/BWF_StockAssessmentReport_2019_FINAL.pdf",193,19,29,0,0,2,0,30,8,0,0,67,4,1,0,0,116,99,0,7,13,0,0,0,0,0,0,0,44,1,1549,0,3,0,0,0,0,1,0,138,0,9,0,0,49,0,4,19,1,0
+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",63,17,11,1,0,0,0,14,3,0,0,12,1,1,0,0,48,88,0,0,12,1,0,0,0,3,1,0,2,0,508,0,0,0,0,0,0,3,4,1,0,0,1,2,0,0,5,7,0,0
+"29","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Eastern king prawn stock assessment report 2020.pdf",82,32,28,0,0,0,0,6,5,0,0,42,2,11,0,0,131,49,0,4,38,1,0,0,0,0,0,0,39,4,432,0,6,0,0,0,0,0,0,39,0,0,3,0,0,0,0,5,0,0
+"30","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Grey_mackerel_stock_assessment_report_2019_final.pdf",102,3,1,0,0,0,0,21,5,0,0,39,0,0,0,0,72,139,0,0,21,0,0,0,0,0,0,0,28,0,528,0,12,0,0,0,0,0,0,1,0,0,0,0,1,0,0,2,0,0
+"31","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/King threadfin stock assessment 2020.pdf",132,30,40,0,0,0,0,33,1,0,0,35,15,1,0,0,148,138,0,7,59,0,0,0,5,1,5,0,12,3,1066,1,0,0,0,0,0,0,4,0,0,0,0,9,0,0,1,5,0,1
+"32","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mudcrab Catch-MSY Final.pdf",256,6,0,0,0,0,0,8,0,0,0,2,0,0,0,0,57,52,0,0,0,2,0,0,0,0,0,0,31,1,358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"33","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mullet_stock_assessment_report_2018.pdf",108,4,5,0,0,0,0,3,19,0,0,27,0,0,0,0,133,72,0,1,26,0,0,0,16,0,0,0,20,0,439,0,9,0,0,0,1,0,6,0,0,0,0,6,0,0,0,17,5,0
+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",72,12,9,3,0,0,0,13,4,0,0,25,2,0,0,0,59,82,0,3,14,1,0,0,0,3,1,0,2,0,618,0,0,0,0,0,0,0,3,0,0,0,1,3,0,0,3,14,0,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",142,13,29,1,0,0,0,18,4,0,0,19,2,0,0,0,111,123,0,2,36,0,0,0,20,4,0,0,0,2,694,0,0,0,0,0,0,1,2,3,0,0,0,3,2,0,2,30,0,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",99,40,17,0,0,0,0,9,23,0,0,19,0,1,0,0,374,142,0,2,73,10,0,0,3,0,0,0,21,11,1101,0,2,0,0,0,0,0,0,5,0,0,0,0,5,0,0,0,0,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",167,24,63,2,0,0,0,37,34,0,0,50,11,0,0,0,191,100,0,0,42,1,0,0,3,1,0,0,6,4,904,0,4,0,0,0,1,0,2,0,0,0,0,1,1,0,11,6,0,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",65,5,16,8,0,0,0,17,14,0,0,31,0,1,0,0,79,102,0,0,24,0,0,0,0,0,0,0,8,1,461,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,8,0,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",132,23,74,5,0,0,0,23,4,0,1,19,2,0,0,0,97,150,0,0,22,6,0,0,0,5,0,0,5,0,769,0,0,0,0,0,0,1,3,2,0,0,0,4,0,0,0,9,0,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",179,22,96,8,0,0,0,36,4,0,0,21,2,0,0,0,196,169,0,0,35,4,0,0,0,34,0,0,22,0,1474,0,0,0,0,0,0,1,3,1,0,1,0,4,0,0,0,11,0,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",91,15,35,1,0,0,0,16,11,0,0,30,2,0,0,0,160,73,0,11,46,2,0,0,1,0,0,0,5,3,552,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",97,10,20,3,0,0,0,28,2,0,0,4,3,0,0,0,126,79,0,0,36,0,0,0,1,0,0,0,14,0,375,0,0,0,0,0,0,0,6,3,0,0,0,2,3,0,4,1,0,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",142,13,61,0,0,1,0,4,25,0,0,100,0,1,0,0,88,138,0,0,22,0,0,0,0,4,0,0,26,7,598,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,1,3,0,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",126,11,4,1,0,2,0,8,4,0,0,60,3,3,0,0,113,59,0,0,33,0,0,0,1,0,0,0,39,8,355,0,7,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0
+"45","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/White teatfish stock assessment 2021.pdf",78,7,15,0,0,1,0,13,4,0,0,37,3,1,0,0,73,32,0,0,17,0,0,0,0,0,0,0,2,0,319,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"Sum",NA,NA,6539,1009,1356,233,7,25,0,499,286,5,8,2334,114,82,0,3,6009,2665,0,1560,973,83,0,0,155,109,156,50,838,158,32119,5,87,53,0,0,54,77,299,359,0,18,17,172,67,3,67,349,53,22
diff --git a/TextAnalysis/top19_frequency_Australia_B.csv b/TextAnalysis/top19_frequency_Australia_B.csv
new file mode 100644
index 0000000..88daf8a
--- /dev/null
+++ b/TextAnalysis/top19_frequency_Australia_B.csv
@@ -0,0 +1,47 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
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+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",2226,134,9,286,309,296,124,19,4,5,0,4009,0,1,77,3,4,4,0
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+"32","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mudcrab Catch-MSY Final.pdf",676,4,8,2,7,152,10,0,0,31,1,990,0,0,0,0,0,0,0
+"33","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mullet_stock_assessment_report_2018.pdf",886,10,22,27,27,240,89,16,0,20,0,1735,1,0,6,6,0,24,0
+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",913,31,17,25,27,165,32,3,1,2,0,1947,0,0,17,5,3,16,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",1355,44,22,19,21,271,91,24,0,0,2,3207,0,1,26,13,2,36,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",1742,22,32,19,31,607,311,3,0,21,11,4504,0,0,6,5,0,2,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",1452,85,71,50,63,365,154,4,0,6,4,3444,1,0,15,6,11,9,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",670,33,31,31,35,208,64,0,0,8,1,1491,0,0,1,0,0,9,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",1317,94,27,19,26,280,79,5,0,5,0,3278,0,1,18,6,0,15,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",1575,121,40,21,24,384,95,34,0,22,0,4852,0,1,17,5,0,25,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",1101,42,27,30,35,255,109,1,0,5,3,1763,0,0,0,0,1,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",858,46,30,4,7,239,70,1,0,14,0,1474,0,0,17,7,4,3,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",918,90,29,100,102,274,50,4,0,26,7,1957,2,0,2,2,1,4,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",809,13,12,60,71,213,70,1,0,39,8,1379,0,0,0,0,1,2,0
+"45","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/White teatfish stock assessment 2021.pdf",731,22,17,37,41,127,46,0,0,2,0,1254,0,0,0,0,0,1,0
+"Sum",NA,NA,61075,2161,792,2334,2927,11200,4042,264,209,838,158,116509,54,77,856,359,67,546,22
diff --git a/TextAnalysis/top19_frequency_ICES_A.csv b/TextAnalysis/top19_frequency_ICES_A.csv
new file mode 100644
index 0000000..20aa420
--- /dev/null
+++ b/TextAnalysis/top19_frequency_ICES_A.csv
@@ -0,0 +1,10 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",1388,255,590,575,18,4,0,0,3,0,0,514,29,41,0,2,1319,169,8,114,12,2,0,0,1512,0,38,0,820,37,7235,0,83,3,0,0,428,7,13,17,0,0,4,14,0,0,8,47,0,21
+"2","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/ices2023_WKBCOD_report_2023.pdf",379,38,165,162,0,0,0,0,0,0,0,176,3,6,0,0,334,15,0,5,2,0,0,0,396,0,0,0,136,14,1970,0,0,0,0,0,36,3,2,0,0,0,1,13,0,0,1,0,0,12
+"3","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBALTCOD2_2019.pdf",350,80,67,83,0,7,0,0,0,0,0,78,0,0,0,0,274,71,0,50,0,0,0,0,85,0,0,0,23,38,2235,0,1,0,0,0,15,4,19,21,0,0,2,7,1,0,1,16,0,1
+"4","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBBALTPEL_2023_final_report.pdf",455,44,176,178,0,8,0,1,1,0,0,120,2,7,0,0,295,6,0,7,0,1,0,0,126,0,59,0,409,45,3276,0,0,0,0,0,215,0,0,3,0,0,0,5,0,0,7,12,1,20
+"5","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/wkdem_2020.pdf",155,8,60,54,0,4,0,0,0,0,0,37,0,3,0,0,173,3,0,2,0,0,0,0,80,0,0,0,48,10,1039,0,0,0,0,0,32,1,1,0,0,0,0,5,0,0,0,0,0,5
+"6","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKFlatNSCS_2020.pdf",649,108,131,131,0,0,0,4,0,0,0,132,11,4,0,0,423,1,0,8,2,36,0,0,3357,0,2,0,388,6,4302,0,1,0,0,0,206,1,2,2,0,0,0,69,0,0,0,99,0,19
+"7","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKMSYSPiCT_2021.pdf",555,72,7,3,1,0,0,1,0,0,0,13,0,1,0,0,328,14,0,244,0,0,0,0,254,0,0,0,311,37,1933,0,0,0,0,0,133,2,10,2,0,0,0,0,0,0,0,8,0,1
+"8","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKSPRAT_2018_Report.pdf",39,23,17,18,0,1,0,0,0,0,0,43,1,3,0,1,53,6,0,5,0,2,0,0,5,0,1,0,3,8,572,0,6,0,0,0,1,0,0,1,0,0,0,2,0,0,0,0,0,1
+"Sum",NA,NA,3970,628,1213,1204,19,24,0,6,4,0,0,1113,46,65,0,3,3199,285,8,435,16,41,0,0,5815,0,100,0,2138,195,22562,0,91,3,0,0,1066,18,47,46,0,0,7,115,1,0,17,182,1,80
diff --git a/TextAnalysis/top19_frequency_ICES_B.csv b/TextAnalysis/top19_frequency_ICES_B.csv
new file mode 100644
index 0000000..fdcbdf6
--- /dev/null
+++ b/TextAnalysis/top19_frequency_ICES_B.csv
@@ -0,0 +1,10 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
+"1","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",18719,719,3,514,649,2169,153,1543,38,820,37,26921,428,7,59,54,8,57,21
+"2","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/ices2023_WKBCOD_report_2023.pdf",4945,240,0,176,221,452,13,402,0,136,14,7439,36,3,4,29,1,0,12
+"3","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBALTCOD2_2019.pdf",6066,129,0,78,82,550,80,88,0,23,38,8095,15,4,54,14,1,18,1
+"4","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBBALTPEL_2023_final_report.pdf",8102,254,2,120,169,520,16,126,59,409,45,10875,215,0,3,19,7,23,20
+"5","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/wkdem_2020.pdf",2111,69,0,37,44,310,6,80,0,48,10,3594,32,1,2,12,0,0,5
+"6","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKFlatNSCS_2020.pdf",12799,178,4,132,166,683,51,3373,2,388,6,19156,206,1,4,76,0,117,19
+"7","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKMSYSPiCT_2021.pdf",4958,15,1,13,14,579,266,254,0,311,37,7983,133,2,15,1,0,16,1
+"8","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKSPRAT_2018_Report.pdf",1127,21,0,43,48,142,7,5,1,3,8,1712,1,0,1,2,0,0,1
+"Sum",NA,NA,58827,1625,10,1113,1393,5405,592,5871,100,2138,195,85775,1066,18,142,207,17,231,80
diff --git a/TextAnalysis/top19_frequency_NOAA_A.csv b/TextAnalysis/top19_frequency_NOAA_A.csv
new file mode 100644
index 0000000..9c2224a
--- /dev/null
+++ b/TextAnalysis/top19_frequency_NOAA_A.csv
@@ -0,0 +1,83 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIatf.pdf",21,1,2,0,0,0,0,0,0,0,0,0,0,0,0,0,31,4,0,1,0,0,0,0,0,0,0,0,0,1,75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,0,0,0
+"2","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIatka.pdf",351,39,66,3,1,0,0,4,0,0,1,58,9,1,0,0,151,32,2,42,0,0,0,0,6,2,1,0,7,27,1198,0,1,4,0,0,0,1,1,5,0,0,0,31,0,0,5,4,0,1
+"3","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIocto.pdf",67,17,0,0,0,1,0,0,0,0,0,5,0,0,0,0,84,10,0,1,1,1,0,0,1,0,0,0,2,6,488,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,1,0,0
+"4","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIoflat (8).pdf",78,16,0,0,0,0,0,0,0,0,0,6,0,0,0,0,31,7,0,1,0,0,0,0,0,0,0,0,0,0,166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"5","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIorock (5).pdf",103,9,0,0,0,0,0,0,0,0,0,5,0,0,0,0,71,6,0,3,0,0,0,0,0,0,0,0,0,8,335,0,0,5,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0
+"6","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIpop.pdf",12,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,18,0,0,0,0,0,0,0,0,0,0,0,0,0,35,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,8,0,0,0
+"7","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIrocksole.pdf",131,38,24,11,0,0,0,1,0,0,0,95,2,1,0,1,32,20,0,2,0,4,0,0,0,0,0,0,24,4,559,0,0,0,0,0,2,1,1,1,0,0,0,50,0,0,4,28,0,1
+"8","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIrougheye (2).pdf",209,39,26,20,0,0,0,0,0,0,0,65,3,0,0,0,101,33,1,18,0,0,0,0,0,0,0,0,5,10,720,2,0,3,0,0,0,0,23,0,0,0,2,18,0,0,1,0,0,1
+"9","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIskate.pdf",23,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,18,8,0,0,0,0,0,0,0,0,0,0,0,0,33,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0
+"10","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/EBSpcod.pdf",664,129,197,8,0,2,0,8,0,1,1,135,12,15,3,1,183,74,2,217,6,5,0,0,9,11,8,0,14,29,4007,0,0,46,0,0,2,1,3,0,0,0,82,54,0,0,12,0,0,0
+"11","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/EBSPollock.pdf",319,52,80,8,1,1,0,3,0,0,0,89,14,4,0,0,186,31,1,23,0,0,0,0,1,10,7,0,23,24,1364,0,2,5,0,0,3,21,3,5,0,0,0,33,0,0,9,11,0,0
+"12","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/GOAdeepflat.pdf",151,10,26,12,0,1,0,4,0,0,0,43,11,0,0,0,42,16,0,4,0,0,0,0,0,0,2,0,5,8,707,0,0,0,0,0,0,0,25,0,0,0,0,11,0,0,3,6,0,0
+"13","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/GOAskate (9).pdf",102,18,0,0,0,0,0,0,0,0,0,6,0,0,0,0,43,23,0,12,0,0,0,0,0,0,0,0,0,1,569,0,0,2,0,0,0,0,4,0,0,0,1,0,0,0,0,0,0,0
+"14","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/PIRKC.pdf",233,22,2,2,0,0,0,1,0,0,0,21,0,0,0,0,27,6,0,1,0,0,0,0,1,5,1,0,10,10,373,0,0,0,0,0,0,1,10,1,0,0,7,0,0,0,0,20,0,0
+"15","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/sablefish.pdf",446,137,183,98,0,23,0,7,0,0,0,257,5,13,0,0,269,53,4,112,11,2,0,2,16,2,1,0,9,27,2910,0,1,1,0,0,0,0,13,1,0,0,2,43,1,0,23,13,0,4
+"16","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/SAFE_snow.pdf",356,14,2,0,19,0,0,4,1,0,0,32,4,4,0,0,76,14,0,2,0,1,0,0,0,30,0,0,14,5,738,0,5,3,0,0,3,2,6,0,0,2,63,0,0,0,0,30,0,0
+"17","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_FLD_GMGB_RPT.pdf",18,0,2,2,0,0,0,0,0,0,0,1,0,0,0,0,13,0,0,0,0,0,0,0,3,0,0,0,6,0,62,0,0,6,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0
+"18","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_FLW_GM_RPT_Update_report_08_26_095440 (1).pdf",22,3,2,2,0,0,0,0,0,0,0,1,0,1,0,0,13,0,2,0,0,0,0,0,5,0,0,0,1,0,107,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"19","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_Herring_Unit_Report.pdf",11,2,5,8,0,0,0,0,0,0,0,12,3,0,0,0,10,2,0,0,0,0,0,0,0,0,0,0,1,0,48,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,0,0,0
+"20","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_HKR_SNEMA_RPT.pdf",18,0,2,2,0,0,0,0,0,0,0,1,0,0,0,0,9,0,0,0,0,0,0,0,4,0,0,0,5,0,66,0,0,6,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0
+"21","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_HKS_GM_RPT.pdf",13,1,2,2,0,0,0,0,0,0,0,2,0,0,0,0,12,0,0,0,0,0,0,0,2,0,0,0,1,0,64,0,0,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"22","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2020_scallop_unit_maindoc_rev.pdf",29,3,7,8,0,0,0,0,0,0,0,5,1,0,0,0,2,0,0,0,0,0,0,0,3,0,0,0,12,0,45,0,0,0,0,0,6,0,0,0,0,0,0,0,0,0,0,0,0,0
+"23","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2021_COD_GB_REPORT_ver3.pdf",16,0,2,3,0,0,0,0,0,0,0,1,0,0,0,0,17,0,0,0,0,0,0,0,0,0,0,0,1,0,50,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"24","NOAA-NEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NEFSC/2021_scup_MTA_report.pdf",56,6,18,31,0,0,0,0,0,0,0,17,0,3,1,0,22,0,0,3,0,1,0,0,15,0,0,0,24,0,115,0,0,0,0,0,8,0,0,0,0,0,0,0,0,0,3,0,0,0
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+"77","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR65_FullSAR_12.8.2020_V3.pdf",298,150,13,2,0,0,0,13,1,17,11,154,24,23,0,0,302,30,0,79,0,11,0,0,125,0,3,1,318,53,3062,0,0,0,0,0,263,1,169,4,0,0,7,1,0,0,166,49,0,0
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+"79","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/agenda-item-d-3.pdf",240,41,44,47,0,1,0,1,2,4,0,76,10,1,1,3,52,32,0,6,0,10,0,0,53,0,12,0,11,32,882,0,1,6,0,2,3,0,2,0,0,0,0,13,0,0,1,14,2,0
+"80","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SAC-11-07-MTG_Yellowfin tuna benchmark assessment 2019.pdf",96,81,46,0,0,0,0,2,16,1,0,47,2,2,0,0,81,5,0,18,3,34,0,0,0,10,0,0,52,4,872,0,0,0,0,0,18,1,16,5,0,0,7,0,1,0,2,4,0,0
+"81","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SC14-SA-WP-11 ISC18 Shortfin Mako Stock Assessment.pdf",32,107,6,2,0,0,0,21,16,18,0,79,3,7,0,0,163,4,0,110,0,0,0,0,2,0,31,2,99,15,751,0,1,0,0,0,4,0,18,2,0,1,12,0,0,0,3,12,1,4
+"Sum",NA,NA,14894,3245,3271,1711,33,70,1,839,372,83,90,4253,462,287,11,17,9245,1672,67,2974,145,334,6,3,4641,210,1618,146,4164,1203,89016,10,466,332,0,27,1442,40,1179,242,4,33,336,706,83,2,775,611,132,48
diff --git a/TextAnalysis/top19_frequency_NOAA_B.csv b/TextAnalysis/top19_frequency_NOAA_B.csv
new file mode 100644
index 0000000..46f6a4f
--- /dev/null
+++ b/TextAnalysis/top19_frequency_NOAA_B.csv
@@ -0,0 +1,83 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
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diff --git a/TextAnalysis/top19_presence_All_A.csv b/TextAnalysis/top19_presence_All_A.csv
new file mode 100644
index 0000000..945ab08
--- /dev/null
+++ b/TextAnalysis/top19_presence_All_A.csv
@@ -0,0 +1,136 @@
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+"126","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S67_Final_SAR.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1
+"127","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S72_SAR_FINAL.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1
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+"130","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR65_FullSAR_12.8.2020_V3.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0
+"131","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SMA_ASS_ENG.pdf",1,1,1,1,1,1,1,1,0,1,1,1,1,0,1,0,1,1,0
+"132","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/agenda-item-d-3.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,0
+"133","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SAC-11-07-MTG_Yellowfin tuna benchmark assessment 2019.pdf",1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1,1,0
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+"Sum",NA,NA,134,128,102,127,127,134,118,104,56,112,93,134,62,40,111,88,81,100,44
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+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,1,1,1,0,0,0,1,1,0,1,0,1,0,0,0,0,0,0,0,1,0,0,0,1,1,0,0,1,1,0,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,1,1,0,0,0,1,1,0,0,0,1,1,0,0,0,0,0,0,1,1,1,0,0,0,1,1,0,1,1,0,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",1,1,1,0,0,0,0,1,1,0,0,1,0,1,0,0,1,1,0,1,1,1,0,0,1,0,0,0,1,1,1,0,1,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,0,1,1,0,0,1,1,0,0,1,1,1,0,1,0,0,0,1,0,1,0,0,0,0,1,1,0,1,1,0,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",1,1,1,1,0,0,0,1,1,0,0,1,0,1,0,0,1,1,0,0,1,0,0,0,0,0,0,0,1,1,1,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,1,0,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",1,1,1,1,0,0,0,1,1,0,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,0,0,1,0,1,0,0,0,0,0,0,1,1,1,0,0,0,1,0,0,0,1,0,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,0,0,1,0,1,0,0,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,1,1,1,0,0,1,0,0,0,1,1,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",1,1,1,1,0,0,0,1,1,0,0,1,1,0,0,0,1,1,0,0,1,0,0,0,1,0,0,0,1,0,1,0,0,0,0,0,0,0,1,1,0,0,0,1,1,0,1,1,0,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",1,1,1,0,0,1,0,1,1,0,0,1,0,1,0,0,1,1,0,0,1,0,0,0,0,1,0,0,1,1,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,1,0,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",1,1,1,1,0,1,0,1,1,0,0,1,1,1,0,0,1,1,0,0,1,0,0,0,1,0,0,0,1,1,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0
+"45","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/White teatfish stock assessment 2021.pdf",1,1,1,0,0,1,0,1,1,0,0,1,1,1,0,0,1,1,0,0,1,0,0,0,0,0,0,0,1,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"Sum",NA,NA,45,45,39,26,1,11,0,40,33,2,6,45,30,21,0,2,45,43,0,29,40,22,0,0,25,18,12,8,35,25,45,3,20,7,0,0,6,17,22,29,0,6,8,24,10,3,22,36,9,12
diff --git a/TextAnalysis/top19_presence_Australia_A.jpg b/TextAnalysis/top19_presence_Australia_A.jpg
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@@ -0,0 +1,47 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
+"1","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BightRedfish2019.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,0,1,1,0,1,0
+"2","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BlueGrenadier2021.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,1,1,1,0,1,1
+"3","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/DeepwaterFlatheadPreliminary2019.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,0,1,1,1,1,1
+"4","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Gummy-assessment-report-Dec2020.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,0,1,1,0,1,1
+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,1,1,1,1,1,0
+"6","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongWest2018.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,0,1,1,0,1,0
+"7","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Macquarie-Island-Patagonian-Toothfish-2019-Stock-Assessment-Report.pdf",1,1,1,1,1,1,1,0,0,1,1,1,0,1,1,1,1,1,1
+"8","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Redfish2020.pdf",1,1,1,1,1,1,1,1,0,0,0,1,0,1,1,1,0,1,1
+"9","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SchoolWhiting2020.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,0,1,1,1,1,0
+"10","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SilverWarehouPreliminary2018.pdf",1,1,1,1,1,1,1,1,1,0,0,1,0,0,1,1,0,0,0
+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",1,1,1,1,1,1,1,0,0,1,0,1,0,1,1,0,0,0,0
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",1,1,1,1,1,1,1,1,1,1,1,1,0,0,1,1,0,1,0
+"13","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021-sardine-fishery-stock-assessment.pdf",1,1,1,1,1,1,1,1,0,0,1,1,0,1,1,1,1,1,1
+"14","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021 assessment of the status of the West Coast Demersal Scalefis.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1
+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",1,1,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1,0
+"16","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Fisheries Research Report 319_ Resource Assessment Report for Aus.pdf",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0
+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",1,1,0,1,1,1,0,0,0,1,1,1,0,0,1,0,0,0,0
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",1,1,1,1,1,1,1,1,0,0,1,1,0,1,1,0,0,1,1
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",1,1,1,1,1,1,1,1,0,0,1,1,0,1,1,0,1,1,0
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",1,1,1,1,1,1,1,0,0,0,1,1,0,1,1,1,1,1,0
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",1,1,1,1,1,1,1,0,0,0,1,1,0,0,0,1,1,1,1
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",1,1,1,1,1,1,1,1,0,1,1,1,0,1,1,0,0,1,1
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",1,1,1,1,1,1,1,1,0,1,1,1,1,0,1,1,0,1,0
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,1,1,1,0
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",1,1,1,1,1,1,1,0,0,0,1,1,0,0,0,0,0,1,1
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,0,1,0,1,1,0
+"27","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/BWF_StockAssessmentReport_2019_FINAL.pdf",1,1,1,1,1,1,1,0,0,1,1,1,0,1,1,1,1,1,0
+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,1,1,1,1,1,0
+"29","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Eastern king prawn stock assessment report 2020.pdf",1,1,1,1,1,1,1,0,0,1,1,1,0,0,1,0,0,1,0
+"30","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Grey_mackerel_stock_assessment_report_2019_final.pdf",1,1,1,1,1,1,1,0,0,1,0,1,0,0,1,1,0,1,0
+"31","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/King threadfin stock assessment 2020.pdf",1,1,1,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1
+"32","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mudcrab Catch-MSY Final.pdf",1,1,1,1,1,1,1,0,0,1,1,1,0,0,0,0,0,0,0
+"33","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mullet_stock_assessment_report_2018.pdf",1,1,1,1,1,1,1,1,0,1,0,1,1,0,1,1,0,1,0
+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",1,1,1,1,1,1,1,1,1,1,0,1,0,0,1,1,1,1,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",1,1,1,1,1,1,1,1,0,0,1,1,0,1,1,1,1,1,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",1,1,1,1,1,1,1,1,0,1,1,1,0,0,1,1,0,1,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",1,1,1,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",1,1,1,1,1,1,1,0,0,1,1,1,0,0,1,0,0,1,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,1,1,1,0,1,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,1,1,1,0,1,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,1,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",1,1,1,1,1,1,1,1,0,1,0,1,0,0,1,1,1,1,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",1,1,1,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,1,1,0
+"45","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/White teatfish stock assessment 2021.pdf",1,1,1,1,1,1,1,0,0,1,0,1,0,0,0,0,0,1,0
+"Sum",NA,NA,45,45,43,45,45,45,44,32,12,35,25,45,6,17,37,31,22,40,12
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@@ -0,0 +1,10 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",1,1,1,1,1,1,0,0,1,0,0,1,1,1,0,1,1,1,1,1,1,1,0,0,1,0,1,0,1,1,1,0,1,1,0,0,1,1,1,1,0,0,1,1,0,0,1,1,0,1
+"2","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/ices2023_WKBCOD_report_2023.pdf",1,1,1,1,0,0,0,0,0,0,0,1,1,1,0,0,1,1,0,1,1,0,0,0,1,0,0,0,1,1,1,0,0,0,0,0,1,1,1,0,0,0,1,1,0,0,1,0,0,1
+"3","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBALTCOD2_2019.pdf",1,1,1,1,0,1,0,0,0,0,0,1,0,0,0,0,1,1,0,1,0,0,0,0,1,0,0,0,1,1,1,0,1,0,0,0,1,1,1,1,0,0,1,1,1,0,1,1,0,1
+"4","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBBALTPEL_2023_final_report.pdf",1,1,1,1,0,1,0,1,1,0,0,1,1,1,0,0,1,1,0,1,0,1,0,0,1,0,1,0,1,1,1,0,0,0,0,0,1,0,0,1,0,0,0,1,0,0,1,1,1,1
+"5","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/wkdem_2020.pdf",1,1,1,1,0,1,0,0,0,0,0,1,0,1,0,0,1,1,0,1,0,0,0,0,1,0,0,0,1,1,1,0,0,0,0,0,1,1,1,0,0,0,0,1,0,0,0,0,0,1
+"6","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKFlatNSCS_2020.pdf",1,1,1,1,0,0,0,1,0,0,0,1,1,1,0,0,1,1,0,1,1,1,0,0,1,0,1,0,1,1,1,0,1,0,0,0,1,1,1,1,0,0,0,1,0,0,0,1,0,1
+"7","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKMSYSPiCT_2021.pdf",1,1,1,1,1,0,0,1,0,0,0,1,0,1,0,0,1,1,0,1,0,0,0,0,1,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,0,0,0,0,0,0,0,1,0,1
+"8","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKSPRAT_2018_Report.pdf",1,1,1,1,0,1,0,0,0,0,0,1,1,1,0,1,1,1,0,1,0,1,0,0,1,0,1,0,1,1,1,0,1,0,0,0,1,0,0,1,0,0,0,1,0,0,0,0,0,1
+"Sum",NA,NA,8,8,8,8,2,5,0,3,2,0,0,8,5,7,0,2,8,8,1,8,3,4,0,0,8,0,4,0,8,8,8,0,4,1,0,0,8,6,6,6,0,0,3,7,1,0,4,5,1,8
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+++ b/TextAnalysis/top19_presence_ICES_B.csv
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diff --git a/TextAnalysis/top19_presence_ICES_B.jpg b/TextAnalysis/top19_presence_ICES_B.jpg
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index 0000000..f0844a6
Binary files /dev/null and b/TextAnalysis/top19_presence_ICES_B.jpg differ
diff --git a/TextAnalysis/top19_presence_NOAA_A.csv b/TextAnalysis/top19_presence_NOAA_A.csv
new file mode 100644
index 0000000..32a608e
--- /dev/null
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diff --git a/TextAnalysis/top19_presence_NOAA_A.jpg b/TextAnalysis/top19_presence_NOAA_A.jpg
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diff --git a/TextAnalysis/top19_presence_NOAA_B.csv b/TextAnalysis/top19_presence_NOAA_B.csv
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diff --git a/TextAnalysis/top19_proportion_All_B.csv b/TextAnalysis/top19_proportion_All_B.csv
new file mode 100644
index 0000000..09f79df
--- /dev/null
+++ b/TextAnalysis/top19_proportion_All_B.csv
@@ -0,0 +1,136 @@
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diff --git a/TextAnalysis/top19_proportion_Australia_A.csv b/TextAnalysis/top19_proportion_Australia_A.csv
new file mode 100644
index 0000000..a0b3deb
--- /dev/null
+++ b/TextAnalysis/top19_proportion_Australia_A.csv
@@ -0,0 +1,47 @@
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diff --git a/TextAnalysis/top19_proportion_Australia_B.csv b/TextAnalysis/top19_proportion_Australia_B.csv
new file mode 100644
index 0000000..8a98c36
--- /dev/null
+++ b/TextAnalysis/top19_proportion_Australia_B.csv
@@ -0,0 +1,47 @@
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+"9","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SchoolWhiting2020.pdf",1.05,0.08,0.01,0.09,0.09,0.15,0.09,0,0,0,0,2.14,0,0,0.05,0.01,0,0,0
+"10","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SilverWarehouPreliminary2018.pdf",1.04,0.06,0.01,0.07,0.08,0.04,0.07,0.01,0,0,0,1.99,0,0,0.05,0.01,0,0,0
+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",1.29,0.04,0,0.05,0.09,0.14,0.07,0,0,0.04,0,2.26,0,0.01,0,0,0,0,0
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",1,0.09,0.01,0.1,0.11,0.18,0.03,0.01,0,0.01,0,2.18,0,0,0.04,0.01,0,0,0
+"13","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021-sardine-fishery-stock-assessment.pdf",0.93,0.09,0,0.03,0.04,0.13,0.01,0,0,0,0.02,2.1,0,0.02,0.01,0.01,0,0.02,0
+"14","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021 assessment of the status of the West Coast Demersal Scalefis.pdf",1.19,0.01,0.01,0.04,0.05,0.2,0.11,0.01,0.03,0.07,0,1.99,0.01,0,0,0.02,0,0.01,0
+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",1.2,0,0,0.03,0.05,0.22,0.21,0,0,0,0,1.97,0,0,0,0,0,0,0
+"16","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Fisheries Research Report 319_ Resource Assessment Report for Aus.pdf",1.05,0.02,0,0.08,0.1,0.21,0.05,0.01,0.05,0.07,0,2.21,0.01,0,0.01,0.02,0,0.01,0
+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",1.59,0,0,0.03,0.03,0.27,0,0,0,0.07,0,2.05,0,0,0,0,0,0,0
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",1.1,0.01,0.01,0.04,0.06,0.27,0.12,0,0,0,0,2.08,0,0,0,0,0,0.03,0
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",1.25,0.02,0.03,0.09,0.11,0.18,0.1,0,0,0,0.01,1.94,0,0,0,0,0,0,0
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",1.36,0.01,0,0.01,0.03,0.17,0.08,0,0,0,0,1.82,0,0,0,0,0,0.01,0
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",0.98,0.05,0,0.06,0.06,0.16,0.06,0,0,0,0.01,2.34,0,0,0,0.01,0,0.01,0
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",1.1,0.01,0.01,0.03,0.05,0.27,0.14,0,0,0,0.01,2.11,0,0,0.01,0,0,0.03,0
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",1.04,0.03,0.01,0.03,0.03,0.28,0.11,0.01,0,0.01,0.01,2.28,0,0,0,0.01,0,0,0
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",1.28,0.01,0.02,0.02,0.02,0.28,0.04,0,0,0.02,0,2.04,0,0,0,0,0,0.01,0
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",1.52,0.02,0.02,0.06,0.06,0.2,0.02,0,0,0,0,2.17,0,0,0,0,0,0,0
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",1.6,0.02,0.02,0.04,0.06,0.27,0.07,0,0,0.01,0,1.96,0,0,0.01,0,0.01,0.01,0
+"27","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/BWF_StockAssessmentReport_2019_FINAL.pdf",1.18,0.03,0.02,0.03,0.04,0.14,0.04,0,0,0.02,0,2.52,0,0,0.08,0.03,0,0.01,0
+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",1.07,0.02,0.02,0.01,0.01,0.16,0.03,0,0,0,0,1.99,0,0,0.02,0,0.01,0.01,0
+"29","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Eastern king prawn stock assessment report 2020.pdf",0.99,0.04,0.01,0.05,0.08,0.25,0.1,0,0,0.04,0,2.01,0,0,0.05,0,0,0.01,0
+"30","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Grey_mackerel_stock_assessment_report_2019_final.pdf",0.95,0.01,0.03,0.04,0.04,0.26,0.07,0,0,0.03,0,1.86,0,0,0,0,0,0,0
+"31","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/King threadfin stock assessment 2020.pdf",1.05,0.06,0.02,0.02,0.03,0.24,0.08,0,0,0.01,0,2.37,0,0,0.02,0.01,0,0.01,0
+"32","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mudcrab Catch-MSY Final.pdf",1.44,0.01,0.02,0,0.01,0.32,0.02,0,0,0.07,0,2.12,0,0,0,0,0,0,0
+"33","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Mullet_stock_assessment_report_2018.pdf",1.04,0.01,0.03,0.03,0.03,0.28,0.1,0.02,0,0.02,0,2.03,0,0,0.01,0.01,0,0.03,0
+"34","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/redthroat emperor stock assessment report 2020.pdf",1.04,0.04,0.02,0.03,0.03,0.19,0.04,0,0,0,0,2.21,0,0,0.02,0.01,0,0.02,0
+"35","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Saddletail snapper stock assessment report 2021.pdf",0.91,0.03,0.01,0.01,0.01,0.18,0.06,0.02,0,0,0,2.15,0,0,0.02,0.01,0,0.02,0
+"36","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/SnapperStockAssessment2018V3.pdf",0.92,0.01,0.02,0.01,0.02,0.32,0.16,0,0,0.01,0.01,2.38,0,0,0,0,0,0,0
+"37","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel EC stock assessment report 2021.pdf",0.91,0.05,0.04,0.03,0.04,0.23,0.1,0,0,0,0,2.17,0,0,0.01,0,0.01,0.01,0
+"38","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Spanish mackerel GOC stock assessment report 2019.pdf",0.9,0.04,0.04,0.04,0.05,0.28,0.09,0,0,0.01,0,2,0,0,0,0,0,0.01,0
+"39","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland east coast crimson snapper.pdf",0.94,0.07,0.02,0.01,0.02,0.2,0.06,0,0,0,0,2.33,0,0,0.01,0,0,0.01,0
+"40","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of Queensland red emperor 2022.pdf",0.69,0.05,0.02,0.01,0.01,0.17,0.04,0.01,0,0.01,0,2.13,0,0,0.01,0,0,0.01,0
+"41","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Stock assessment of the Queensland ballots saucer scallop_2022ed..pdf",1.2,0.05,0.03,0.03,0.04,0.28,0.12,0,0,0.01,0,1.91,0,0,0,0,0,0,0
+"42","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/stout whiting stock assessment report 2021.pdf",1.11,0.06,0.04,0.01,0.01,0.31,0.09,0,0,0.02,0,1.9,0,0,0.02,0.01,0.01,0,0
+"43","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tailor stock assessment report 2020.pdf",0.86,0.08,0.03,0.09,0.1,0.26,0.05,0,0,0.02,0.01,1.84,0,0,0,0,0,0,0
+"44","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Tiger prawn stock assessment report 2020.pdf",1.23,0.02,0.02,0.09,0.11,0.32,0.11,0,0,0.06,0.01,2.1,0,0,0,0,0,0,0
+"45","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/White teatfish stock assessment 2021.pdf",1.32,0.04,0.03,0.07,0.07,0.23,0.08,0,0,0,0,2.27,0,0,0,0,0,0,0
+"Sum",NA,NA,50.33,1.83,0.7,1.98,2.42,9.08,3.3,0.18,0.08,0.64,0.1,93.24,0.02,0.04,0.71,0.25,0.04,0.35,0.01
diff --git a/TextAnalysis/top19_proportion_ICES_A.csv b/TextAnalysis/top19_proportion_ICES_A.csv
new file mode 100644
index 0000000..508addf
--- /dev/null
+++ b/TextAnalysis/top19_proportion_ICES_A.csv
@@ -0,0 +1,10 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",0.07,0.01,0.03,0.03,0,0,0,0,0,0,0,0.03,0,0,0,0,0.07,0.01,0,0.01,0,0,0,0,0.08,0,0,0,0.04,0,0.37,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0
+"2","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/ices2023_WKBCOD_report_2023.pdf",0.09,0.01,0.04,0.04,0,0,0,0,0,0,0,0.04,0,0,0,0,0.08,0,0,0,0,0,0,0,0.09,0,0,0,0.03,0,0.47,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0
+"3","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBALTCOD2_2019.pdf",0.07,0.02,0.01,0.02,0,0,0,0,0,0,0,0.02,0,0,0,0,0.06,0.01,0,0.01,0,0,0,0,0.02,0,0,0,0,0.01,0.46,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"4","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBBALTPEL_2023_final_report.pdf",0.08,0.01,0.03,0.03,0,0,0,0,0,0,0,0.02,0,0,0,0,0.05,0,0,0,0,0,0,0,0.02,0,0.01,0,0.07,0.01,0.58,0,0,0,0,0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0
+"5","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/wkdem_2020.pdf",0.07,0,0.03,0.03,0,0,0,0,0,0,0,0.02,0,0,0,0,0.08,0,0,0,0,0,0,0,0.04,0,0,0,0.02,0,0.49,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0
+"6","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKFlatNSCS_2020.pdf",0.07,0.01,0.01,0.01,0,0,0,0,0,0,0,0.01,0,0,0,0,0.05,0,0,0,0,0,0,0,0.36,0,0,0,0.04,0,0.46,0,0,0,0,0,0.02,0,0,0,0,0,0,0.01,0,0,0,0.01,0,0
+"7","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKMSYSPiCT_2021.pdf",0.13,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.08,0,0,0.06,0,0,0,0,0.06,0,0,0,0.07,0.01,0.46,0,0,0,0,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0
+"8","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKSPRAT_2018_Report.pdf",0.04,0.02,0.02,0.02,0,0,0,0,0,0,0,0.04,0,0,0,0,0.05,0.01,0,0.01,0,0,0,0,0.01,0,0,0,0,0.01,0.58,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+"Sum",NA,NA,0.62,0.1,0.17,0.18,0,0,0,0,0,0,0,0.18,0,0,0,0,0.52,0.03,0,0.09,0,0,0,0,0.68,0,0.01,0,0.27,0.04,3.87,0,0.01,0,0,0,0.14,0,0,0,0,0,0,0.01,0,0,0,0.01,0,0
diff --git a/TextAnalysis/top19_proportion_ICES_B.csv b/TextAnalysis/top19_proportion_ICES_B.csv
new file mode 100644
index 0000000..4613c0c
--- /dev/null
+++ b/TextAnalysis/top19_proportion_ICES_B.csv
@@ -0,0 +1,10 @@
+"ID","Region","File_Path","biomass|b|abundance","spawning biomass|sb|spawning stock biomass|ssb|mature biomass|spawners|effective spawning output","unfished|virgin|initial equilibrium|unfished equilibrium","recruitment","recruits|recruit|age 0 fish|age 1 fish","catch|harvest|total removals","catch per unit effort|cpue|catch rate|index of abundance|catch per effort|fishing success","landings|retained catch","spawner per recruit|spawning potential ratio|spr","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f|instantaneous fishing mortality rate|harvest rate|exploitation rate|finite fishing mortality|apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition|length frequency|length observation|size frequency|size composition","age composition|age frequency|age observation","projection","sex|gender","plus group"
+"1","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/01_WGNSSK_Report_2019.pdf",0.96,0.04,0,0.03,0.03,0.11,0.01,0.08,0,0.04,0,1.39,0.02,0,0,0,0,0,0
+"2","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/ices2023_WKBCOD_report_2023.pdf",1.18,0.06,0,0.04,0.05,0.11,0,0.1,0,0.03,0,1.78,0.01,0,0,0.01,0,0,0
+"3","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBALTCOD2_2019.pdf",1.24,0.03,0,0.02,0.02,0.11,0.02,0.02,0,0,0.01,1.66,0,0,0.01,0,0,0,0
+"4","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKBBALTPEL_2023_final_report.pdf",1.43,0.04,0,0.02,0.03,0.09,0,0.02,0.01,0.07,0.01,1.92,0.04,0,0,0,0,0,0
+"5","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/wkdem_2020.pdf",1,0.03,0,0.02,0.02,0.15,0,0.04,0,0.02,0,1.7,0.02,0,0,0.01,0,0,0
+"6","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKFlatNSCS_2020.pdf",1.38,0.02,0,0.01,0.02,0.07,0.01,0.36,0,0.04,0,2.06,0.02,0,0,0.01,0,0.01,0
+"7","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKMSYSPiCT_2021.pdf",1.18,0,0,0,0,0.14,0.06,0.06,0,0.07,0.01,1.91,0.03,0,0,0,0,0,0
+"8","ICES","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/ICES/WKSPRAT_2018_Report.pdf",1.15,0.02,0,0.04,0.05,0.14,0.01,0.01,0,0,0.01,1.75,0,0,0,0,0,0,0
+"Sum",NA,NA,9.52,0.24,0,0.18,0.22,0.92,0.11,0.69,0.01,0.27,0.04,14.17,0.14,0,0.01,0.03,0,0.01,0
diff --git a/TextAnalysis/top19_proportion_NOAA_A.csv b/TextAnalysis/top19_proportion_NOAA_A.csv
new file mode 100644
index 0000000..315b6ec
--- /dev/null
+++ b/TextAnalysis/top19_proportion_NOAA_A.csv
@@ -0,0 +1,83 @@
+"ID","Region","File_Path","biomass|b","abundance","spawning biomass|sb","spawning stock biomass|ssb","mature biomass","spawners","effective spawning output","unfished","virgin","initial equilibrium","unfished equilibrium","recruitment","recruits","recruit","age 0 fish","age 1 fish","catch","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort","fishing success","landings","retained catch","spawner per recruit|spr","spawning potential ratio","maximum sustainable yield|msy","instantaneous total mortality rate|z","fishing mortality|f","instantaneous fishing mortality rate","harvest rate","exploitation rate","finite fishing mortality","apical f","fishing mortality at maximum sustainable yield|fmsy","mass","length composition","length frequency","length observation","size frequency","size composition","age composition","age frequency","age observation","projection","sex","gender","plus group"
+"1","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIatf.pdf",0.12,0.01,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17,0.02,0,0.01,0,0,0,0,0,0,0,0,0,0.01,0.41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0
+"2","NOAA-AFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-AFSC/BSAIatka.pdf",0.14,0.02,0.03,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0.06,0.01,0,0.02,0,0,0,0,0,0,0,0,0,0.01,0.46,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0
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diff --git a/TextAnalysis/top19_proportion_NOAA_B.csv b/TextAnalysis/top19_proportion_NOAA_B.csv
new file mode 100644
index 0000000..65fe613
--- /dev/null
+++ b/TextAnalysis/top19_proportion_NOAA_B.csv
@@ -0,0 +1,83 @@
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diff --git a/TextAnalysis/top7_analysis.R b/TextAnalysis/top7_analysis.R
new file mode 100644
index 0000000..3d8c4b7
--- /dev/null
+++ b/TextAnalysis/top7_analysis.R
@@ -0,0 +1,270 @@
+library(googledrive)
+library(here)
+library(pdftools)
+library(tm)
+library(stringr)
+library(wordcloud)
+library(RColorBrewer)
+library(ggplot2)
+library(scales)
+library(viridis)
+
+# Define keyword ---------------------------------------------------------------
+
+# z <- data.frame(
+#   keyword = c(
+#     "instantaneous total mortality rate|z"
+#   ),
+#   group = "instantaneous mortality rate"
+# )
+
+spawning_biomass <- data.frame(
+  keyword = c(
+    "spawning biomass|sb",
+    "spawning stock biomass|ssb", 
+    "spawning output",
+    "spawning stock output|sso|mature biomass|spawners|effective spawning output"
+  ),
+  group = "spawning biomass"
+)
+
+cpue <- data.frame(
+  keyword = c(
+    "catch per unit effort|cpue",
+    "catch rate", 
+    "index of abundance",
+    "catch per effort|fishing success"
+  ),
+  group = "catch per unit effort"
+)
+
+catch <- data.frame(
+  keyword = c(
+    "catch",
+    "total mortality", 
+    "harvest", 
+    "total removals"
+  ),
+  group = "catch"
+)
+
+landings <- data.frame(
+  keyword = c(
+    "landings",
+    "retained catch"
+  ),
+  group = "landings"
+)
+
+projection <- data.frame(
+  keyword = c(
+    "projection",
+    "forecast",
+    "prediction"
+  ),
+  group = "projection"
+)
+
+sex <- data.frame(
+  keyword = c(
+    "sex",
+    "gender"
+  ),
+  group = "sex"
+)
+
+# spr <- data.frame(
+#   keyword = c(
+#     "spawner per recruit|spr",
+#     "spawning potential ratio"
+#   ),
+#   group = "spawner per recruit"
+# )
+
+mass <- data.frame(
+  keyword = c(
+    "mass",
+    "weight"
+  ),
+  group = "mass"
+)
+
+keyword_map <- rbind(catch, cpue, landings,
+                     projection, sex, spawning_biomass, mass)
+keyword_map$keyword_id <- as.factor(1:nrow(keyword_map))
+keyword <- keyword_map$keyword
+
+# Create keywords database ----------------------------------------------------------------
+
+working_path <- here::here("StockAssessment")
+subfolder_path <- list.dirs(path = working_path, full.names = TRUE, recursive = FALSE)
+subfolder_name <- list.dirs(path = working_path, full.names = FALSE, recursive = FALSE)
+
+# Create keyword database
+col_name <- c("ID", "Region", "File_Path", keyword)
+frequency_database <- presence_database <- proportion_database <- 
+  data.frame(matrix(NA, ncol = length(col_name))) 
+colnames(frequency_database) <- colnames(presence_database) <- colnames(proportion_database) <- 
+  col_name
+
+for (subfolder_id in seq_along(subfolder_path)){
+  
+  file_path <- list.files(subfolder_path[subfolder_id], recursive = FALSE, full.names = TRUE)
+  
+  for(file_id in seq_along(file_path)){
+    file <- file_path[file_id]
+    
+    # Create metadata of files
+    docs <- tm::Corpus(URISource(file),
+                       readerControl = list(reader = readPDF)
+    )
+    
+    # Convert symbols to space
+    toSpace <- tm::content_transformer(
+      function(x, pattern) gsub(pattern, " ", x)
+    )
+    docs <- tm::tm_map(docs, toSpace, "/")
+    docs <- tm::tm_map(docs, toSpace, "@")
+    docs <- tm::tm_map(docs, toSpace, "\\|")
+    
+    # Convert text to lower case
+    docs <- tm::tm_map(
+      docs,
+      content_transformer(tolower)
+    )
+    
+    # Remove punctuations
+    docs <- tm::tm_map(docs, removePunctuation)
+    
+    # Eliminate extra white spaces
+    docs <- tm::tm_map(docs, stripWhitespace)
+    
+    frequency <- presence <- proportion <- c()
+    for (keyword_id in seq_along(keyword)) {
+      #print(paste0("Folder: ", subfolder_id, "; File: ", file_id, "; Keyword: ", keyword_id))
+      frequency[keyword_id] <- sum(stringr::str_count(docs[[1]]$content, paste("\\b", keyword[keyword_id], "\\b", sep = ""))) # Match if the current position is a word boundary
+      presence[keyword_id] <- ifelse(frequency[keyword_id] > 0, 1, 0)
+      proportion[keyword_id] <- round(frequency[keyword_id]/sum(stringr::str_count(docs[[1]]$content))*100, digits = 2)
+    }
+    
+    if (subfolder_id == 1 & file_id == 1) {
+      
+      frequency_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], frequency)
+      
+      presence_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], presence)
+      
+      proportion_database[1, ] <- c(NA, subfolder_name[subfolder_id], file_path[file_id], proportion)
+      
+    } else {
+      
+      frequency_database <- rbind(
+        frequency_database, 
+        c(NA, subfolder_name[subfolder_id], file_path[file_id], frequency)
+      )
+      
+      presence_database <- rbind(
+        presence_database, 
+        c(NA, subfolder_name[subfolder_id], file_path[file_id], presence)
+      )
+      
+      proportion_database <- rbind(
+        proportion_database, 
+        c(NA, subfolder_name[subfolder_id], file_path[file_id], proportion)
+      )
+      
+    }
+    
+  }
+  
+}
+
+frequency_database$ID <- 1:nrow(frequency_database)
+presence_database$ID <- 1:nrow(presence_database)
+proportion_database$ID <- 1:nrow(proportion_database)
+
+frequency_database[, 4:ncol(frequency_database)] <- sapply(frequency_database[, 4:ncol(frequency_database)], as.numeric)
+frequency_database <- rbind(
+  frequency_database,
+  c(NA, NA, NA, apply(frequency_database[, 4:ncol(frequency_database)], 2, sum))
+)
+frequency_database[nrow(frequency_database), "ID"] <- "Sum"
+
+presence_database[, 4:ncol(presence_database)] <- sapply(presence_database[, 4:ncol(presence_database)], as.numeric)
+presence_database <- rbind(
+  presence_database,
+  c(NA, NA, NA, apply(presence_database[, 4:ncol(presence_database)], 2, sum))
+)
+presence_database[nrow(presence_database), "ID"] <- "Sum"
+
+proportion_database[, 4:ncol(proportion_database)] <- sapply(proportion_database[, 4:ncol(proportion_database)], as.numeric)
+proportion_database <- rbind(
+  proportion_database,
+  c(NA, NA, NA, apply(proportion_database[, 4:ncol(proportion_database)], 2, sum))
+)
+proportion_database[nrow(proportion_database), "ID"] <- "Sum"
+
+write.csv(frequency_database, file=here::here("TextAnalysis", "top7_frequency.csv"), row.names=FALSE)
+write.csv(presence_database, file=here::here("TextAnalysis", "top7_presence.csv"), row.names=FALSE)
+write.csv(proportion_database, file=here::here("TextAnalysis", "top7_proportion.csv"), row.names=FALSE)
+
+# Upload xlsx to Google Drive
+authorize_GoogleDrive <- FALSE
+if (authorize_GoogleDrive) {
+  # Google Drive folder id
+  id_googledrive <- "1BUsYYd11lE2TECqHru5tX6LwkMniVnKv"
+  googledrive::drive_upload(media = xlsx_path, path = as_id(id_googledrive), overwrite = TRUE, type="spreadsheet")
+}
+
+# Plot results ------------------------------------------------------------
+frequency_database <- read.csv(file=here::here("TextAnalysis", "top7_frequency.csv"))
+presence_database<-read.csv(file=here::here("TextAnalysis", "top7_presence.csv"))
+proportion_database<-read.csv(file=here::here("TextAnalysis", "top7_proportion.csv"))
+
+colnames(presence_database) <- col_name
+data_reshape <- reshape2::melt(
+  presence_database[, c(2, 4:ncol(presence_database))],
+  id = c("Region")
+)
+colnames(data_reshape) <- c("Region", "keyword", "value")
+
+data_merge <- merge(data_reshape, keyword_map, by= "keyword")
+
+sum_by_group <- aggregate(value ~ keyword+keyword_id+group+Region, data = data_merge, sum)
+sum_by_group <- sum_by_group[order(sum_by_group$keyword_id),]
+group <- unique(sum_by_group$group)
+sum_by_group$group <- factor(sum_by_group$group, levels = group)
+jpeg(filename = here::here("TextAnalysis", "top7_barplot_sum.jpg"), width=200, height=300, units="mm", res=1200)
+ggplot(sum_by_group, aes(fill=Region, y=value, x=keyword_id)) + 
+  geom_bar(position="dodge", stat="identity") +
+  facet_wrap(~group, scales = "free_x", ncol = 1) +
+  labs(
+    x = "Term ID",
+    y = "Frequency"
+  ) +
+  scale_fill_viridis(discrete = TRUE) +
+  theme(
+    panel.background = NULL,
+    panel.grid.major.x = element_blank(), 
+    panel.grid.major.y = element_blank()) 
+# ggsave(here::here("TextAnalysis", "top7_barplot_sum.jpg"))
+dev.off()
+
+mean_by_group <- aggregate(value ~ keyword+keyword_id+group+Region, data = data_merge, mean)
+mean_by_group <- mean_by_group[order(mean_by_group$keyword_id),]
+group <- unique(mean_by_group$group)
+mean_by_group$group <- factor(sum_by_group$group, levels = group)
+jpeg(filename = here::here("TextAnalysis", "top7_barplot_mean.jpg"), width=200, height=300, units="mm", res=1200)
+ggplot(mean_by_group, aes(fill=Region, y=value*100, x=keyword_id)) + 
+  geom_bar(position="dodge", stat="identity") +
+  facet_wrap(~group, scales = "free_x", ncol = 1) +
+  labs(
+    x = "Term ID",
+    y = "Presence (%)"
+  ) +
+  scale_fill_viridis(discrete = TRUE) +
+  geom_vline(xintercept = c(0:5)+0.5) +
+  scale_y_continuous(expand=expansion(mult=c(0.0,0.0)))+
+  scale_x_discrete(expand=expansion(mult=c(0.0,0.0))) +
+  theme_bw()
+# ggsave(here::here("TextAnalysis", "top7_barplot_mean.jpg"))
+dev.off()
diff --git a/TextAnalysis/top7_barplot_mean.jpg b/TextAnalysis/top7_barplot_mean.jpg
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diff --git a/TextAnalysis/top7_barplot_sum.jpg b/TextAnalysis/top7_barplot_sum.jpg
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diff --git a/TextAnalysis/top7_frequency.csv b/TextAnalysis/top7_frequency.csv
new file mode 100644
index 0000000..914aeef
--- /dev/null
+++ b/TextAnalysis/top7_frequency.csv
@@ -0,0 +1,136 @@
+"ID","Region","File_Path","catch","total mortality","harvest","total removals","catch per unit effort|cpue","catch rate","index of abundance","catch per effort|fishing success","landings","retained catch","projection","forecast","prediction","sex","gender","spawning biomass|sb","spawning stock biomass|ssb","spawning output","spawning stock output|sso|mature biomass|spawners|effective spawning output","mass","weight"
+"1","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BightRedfish2019.pdf",29,0,8,0,39,4,0,0,4,0,0,0,0,1,1,28,10,0,1,0,2
+"2","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/BlueGrenadier2021.pdf",41,0,10,0,22,11,0,0,11,3,0,0,0,9,1,40,6,0,2,9,16
+"3","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/DeepwaterFlatheadPreliminary2019.pdf",31,0,9,0,14,5,1,0,4,0,1,0,0,1,0,23,6,0,1,0,0
+"4","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Gummy-assessment-report-Dec2020.pdf",34,0,2,0,122,0,4,0,5,0,0,0,0,11,0,2,0,0,10,0,10
+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",153,2,16,0,76,35,0,0,16,3,4,2,0,1,0,40,56,0,6,1,5
+"6","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongWest2018.pdf",78,2,9,0,30,24,2,0,11,0,0,0,0,1,1,20,14,0,3,0,5
+"7","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Macquarie-Island-Patagonian-Toothfish-2019-Stock-Assessment-Report.pdf",122,0,9,0,3,1,0,0,0,0,5,0,1,11,40,72,28,0,39,1,10
+"8","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Redfish2020.pdf",33,0,0,0,30,6,0,0,11,1,0,0,0,1,0,34,6,0,2,1,2
+"9","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SchoolWhiting2020.pdf",177,1,12,0,156,8,0,0,4,1,1,0,0,2,1,70,48,0,4,0,4
+"10","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/SilverWarehouPreliminary2018.pdf",6,0,0,0,22,1,0,0,2,0,0,0,0,0,0,16,3,0,0,0,0
+"11","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/Stock assessment of the Joseph Bonaparte Gulf redleg banana prawn (Penaeus indicus) fishery to 2021.pdf",53,0,30,0,45,0,0,0,0,0,0,0,4,0,0,31,0,0,9,8,2
+"12","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/TigerFlathead2019.pdf",144,0,10,0,26,7,0,0,6,2,0,0,0,2,1,55,10,0,2,0,2
+"13","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021-sardine-fishery-stock-assessment.pdf",136,0,27,0,12,0,1,0,1,0,1,0,0,23,0,142,4,0,12,33,46
+"14","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/2021 assessment of the status of the West Coast Demersal Scalefis.pdf",294,5,29,0,243,7,16,0,3,35,6,0,0,13,0,27,1,0,66,0,42
+"15","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/FINAL_RL-Stock-Assessment-Report-201718-final-150319-for-email.pdf",67,0,40,0,93,8,0,0,0,0,0,0,0,2,0,0,0,0,4,2,13
+"16","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Fisheries Research Report 319_ Resource Assessment Report for Aus.pdf",316,2,41,0,27,35,2,0,14,0,1,0,2,10,0,34,3,0,35,1,11
+"17","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Harvestable_biomass_of_Katelysia_spp._in_the_South_Australian_Vongole_Fishery.pdf",20,0,21,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,4,0,11
+"18","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/nz-rock-lobster-2019-20-assessment.pdf",268,1,18,0,85,39,2,0,2,0,0,0,1,31,0,0,0,0,8,1,55
+"19","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/RL_Stock_Assessment_2017-19_Final_June_2019.pdf",58,0,4,0,38,2,0,0,0,1,1,0,0,1,0,4,2,0,3,1,2
+"20","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/rr2016-0822_torres_strait_rock_lobster_final_report_2019_on_fishery_surveys_cpue_stock_assessment_and_harvest_control_rule_development.pdf",555,0,15,0,277,11,11,0,0,0,3,3,12,35,0,35,1,0,165,11,28
+"21","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Snapper_Chrysophrys_auratus_Fishery_Assessment.pdf",182,0,32,0,71,21,5,0,0,0,1,0,0,10,0,88,0,0,10,0,52
+"22","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/sz-rock-lobster-2019-20-assessment.pdf",267,1,17,0,92,50,2,0,2,0,0,0,1,31,0,0,0,0,10,1,50
+"23","Australia-Other","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Other/Torres Strait Spanish mackerel stock assessment with data to June 2021.pdf",226,2,122,0,0,63,0,0,3,5,0,18,8,5,0,32,2,0,17,0,20
+"24","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Barramundi Stock Assessment 2019 Final.pdf",226,0,167,0,0,42,1,0,6,1,4,0,0,5,2,0,0,0,37,0,9
+"25","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Black teatfish stock assessment 2021.pdf",46,0,25,0,0,5,1,0,0,0,0,0,0,0,0,5,0,0,4,0,11
+"26","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/blue swimmer crab stock assessment report 2020.pdf",75,0,106,0,0,19,7,0,0,2,6,2,0,6,0,5,0,0,1,0,5
+"27","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/BWF_StockAssessmentReport_2019_FINAL.pdf",116,1,99,0,7,13,0,0,0,0,4,0,0,19,1,29,0,0,21,1,22
+"28","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Common coral trout stock assessment 2020.pdf",48,1,88,0,0,12,1,0,0,3,5,1,3,7,0,11,1,6,12,3,17
+"29","Australia-Queensland","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Queensland/Eastern king prawn stock assessment report 2020.pdf",131,0,49,0,4,38,1,0,0,0,0,0,0,5,0,28,0,0,6,0,5
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+"117","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/Dusky_update_report_2016.pdf",21,0,0,5,5,0,0,0,12,0,6,0,0,3,0,0,2,0,11,1,10
+"118","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/KGM_GOM_SA_08282020_final-revision_3.pdf",25,0,5,3,8,0,7,0,76,19,1,1,0,5,2,34,71,5,4,0,4
+"119","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S23_SAR_complete_and_final.pdf",112,11,77,1,11,1,3,0,205,0,43,0,2,14,0,107,118,0,24,0,38
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+"122","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S51_FINAL_SAR_0.pdf",102,4,11,0,44,4,9,1,309,0,25,3,1,10,10,54,77,3,66,0,65
+"123","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S52_Final_SAR_v2.pdf",71,3,25,1,78,1,1,0,84,24,17,7,1,0,2,79,90,13,48,0,17
+"124","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S57_Final_SAR.pdf",55,1,29,1,23,0,4,0,193,0,8,0,1,11,0,24,13,31,62,0,25
+"125","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S64_SAR_FINAL.pdf",120,5,36,0,81,3,7,0,320,18,17,2,4,34,2,69,125,0,61,1,78
+"126","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S67_Final_SAR.pdf",105,1,32,1,89,4,1,0,144,0,16,18,1,8,2,108,131,6,30,0,29
+"127","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S72_SAR_FINAL.pdf",53,2,34,0,64,2,1,0,169,9,13,1,1,15,0,218,227,1,103,0,98
+"128","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SA BSB 2018.pdf",29,2,18,0,9,0,13,2,145,0,37,0,2,3,0,76,50,0,11,0,65
+"129","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR_60_SA_Red_Porgy_SAR_4.9.2020.pdf",33,3,33,2,6,1,10,1,193,0,42,0,3,6,0,106,101,0,25,0,55
+"130","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR65_FullSAR_12.8.2020_V3.pdf",302,3,30,0,79,0,11,0,125,0,166,35,3,49,0,13,2,0,45,1,84
+"131","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SMA_ASS_ENG.pdf",136,0,9,0,69,0,1,0,11,0,1,1,3,5,0,6,3,1,9,0,12
+"132","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/agenda-item-d-3.pdf",52,0,32,0,6,0,10,0,53,0,1,27,1,14,2,44,47,0,37,0,15
+"133","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SAC-11-07-MTG_Yellowfin tuna benchmark assessment 2019.pdf",81,0,5,0,18,3,34,0,0,10,2,0,1,4,0,46,0,0,51,1,8
+"134","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SC14-SA-WP-11 ISC18 Shortfin Mako Stock Assessment.pdf",163,0,4,0,110,0,0,0,2,0,3,14,0,12,1,6,2,1,9,0,9
+"Sum",NA,NA,18453,238,4622,75,4969,1134,458,9,10611,319,859,908,299,1142,186,5840,3148,967,3117,135,3221
diff --git a/TextAnalysis/top7_presence.csv b/TextAnalysis/top7_presence.csv
new file mode 100644
index 0000000..07d2dbb
--- /dev/null
+++ b/TextAnalysis/top7_presence.csv
@@ -0,0 +1,136 @@
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+"5","Australia-Federal","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/Australia-Federal/JackassMorwongE2021.pdf",1,1,1,0,1,1,0,0,1,1,1,1,0,1,0,1,1,0,1,1,1
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diff --git a/TextAnalysis/top7_proportion.csv b/TextAnalysis/top7_proportion.csv
new file mode 100644
index 0000000..a8f17c7
--- /dev/null
+++ b/TextAnalysis/top7_proportion.csv
@@ -0,0 +1,136 @@
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+"90","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Cabezon-2019_FINAL.pdf",0.06,0,0.01,0,0.01,0,0,0,0.02,0,0,0,0,0,0,0.03,0,0.02,0.01,0,0.01
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+"92","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/dover_sole_december_2021_final.pdf",0.02,0,0.01,0,0,0,0.01,0,0.03,0,0,0,0,0.02,0,0.04,0,0,0.01,0,0.01
+"93","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/g-5-attachment-3-draft-full-assessment-of-status-of-the-pacific-spiny-dogfish-shark-resource-off-the-continental-u-s-pacific-coast-in-2021-electronic-only.pdf",0.08,0,0.01,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0.04,0.02,0,0.01
+"94","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Gopher_BlackandYellow_Assessment_2019-1.pdf",0.1,0.01,0.01,0,0,0,0.01,0,0.04,0,0,0,0,0,0,0,0,0.01,0.01,0,0
+"95","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/hake-assessment-post-srg-final_20210303.pdf",0.08,0,0.02,0,0,0,0,0,0.01,0,0,0.01,0,0,0,0.05,0,0,0.01,0,0.01
+"96","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Longnose skate 2019_FINAL.pdf",0.08,0,0,0,0,0,0,0,0.07,0,0,0,0,0,0,0.03,0,0.01,0.02,0,0.01
+"97","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/PacificOceanPerch2017_Assessment_Final.pdf",0.04,0,0.01,0,0.01,0,0.01,0,0.03,0,0,0,0,0.01,0,0,0,0.04,0.01,0,0.02
+"98","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/sablefish_20191022.pdf",0.05,0,0.01,0,0,0,0,0,0.02,0,0,0,0,0,0,0.02,0,0,0.01,0,0.01
+"99","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/WidowAssessment2015.pdf",0.02,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0.02,0,0,0,0,0.01
+"100","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Yelloweye rockfish 2017.pdf",0.07,0,0,0,0.01,0,0,0,0.02,0,0,0,0,0,0,0,0,0.03,0.01,0,0
+"101","NOAA-NWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-NWFSC/Yellowtail rockfish 2017.pdf",0.05,0,0.01,0,0.01,0,0,0,0.02,0,0,0,0,0,0,0,0,0.02,0.01,0,0.01
+"102","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/NMFS-PIFSC-60.pdf",0.21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.01
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+"106","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SA-WP-06-[SP-alb-assessment] Rev 1.pdf",0.05,0,0,0,0.04,0,0,0,0,0,0,0,0,0,0,0.07,0,0,0,0,0.01
+"107","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC14-SA-WP-08 Silky shark stock assessment (1).pdf",0.1,0,0,0,0.1,0.02,0,0,0,0,0,0,0,0.01,0,0.01,0,0,0.08,0,0
+"108","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC15-SA-WP-05 SKJ-Assessment REV2 (1).pdf",0.03,0,0,0,0.04,0,0,0,0,0,0,0,0,0,0,0.09,0,0,0.02,0,0.01
+"109","NOAA-PIFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-PIFSC/SC15-SA-WP-06 Oceanic whitetip shark_assessment.pdf",0.12,0,0,0,0.03,0,0,0,0,0,0,0,0.01,0,0,0.06,0,0,0.02,0,0
+"110","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/05.-Traditional-Interim-assessment-report-RS-002-1.pdf",0.13,0,0.02,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0.08
+"111","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/08b.-SEDAR61_2021IA_Final.pdf",0.12,0,0.04,0,0,0,0.05,0,0.03,0,0.01,0,0,0,0,0,0,0,0,0,0.06
+"112","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2019_WHM_SA_ENG.pdf",0.06,0,0,0,0.04,0,0,0,0.01,0,0.01,0,0,0.01,0,0,0.01,0,0,0,0
+"113","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2020_ALB_ENG.pdf",0.05,0,0,0,0.09,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.02
+"114","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/2021_WBFT_SA_ENG.pdf",0.03,0,0,0,0.01,0,0,0,0,0,0.01,0,0,0,0,0.03,0.03,0,0.02,0,0
+"115","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/Atl_Blacknose_SAR.pdf",0.06,0,0,0,0.04,0,0,0,0.02,0,0.01,0,0,0,0,0,0,0,0.01,0,0.01
+"116","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/B-8a-Gray_triggerfish_interim_9102020.pdf",0.14,0,0.03,0,0,0,0.02,0,0.03,0,0.01,0,0,0,0,0,0,0,0.01,0,0.06
+"117","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/Dusky_update_report_2016.pdf",0.03,0,0,0.01,0.01,0,0,0,0.01,0,0.01,0,0,0,0,0,0,0,0.01,0,0.01
+"118","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/KGM_GOM_SA_08282020_final-revision_3.pdf",0.03,0,0.01,0,0.01,0,0.01,0,0.09,0.02,0,0,0,0.01,0,0.04,0.08,0.01,0,0,0
+"119","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S23_SAR_complete_and_final.pdf",0.03,0,0.02,0,0,0,0,0,0.05,0,0.01,0,0,0,0,0.02,0.03,0,0.01,0,0.01
+"120","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S28UpdateSAR_V2.pdf",0.01,0,0.01,0,0.02,0,0,0,0.06,0,0,0,0,0,0,0.03,0.05,0,0.02,0,0.01
+"121","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S34_ATSH_SAR.pdf",0.04,0,0.01,0,0.01,0,0,0,0.01,0,0.03,0,0,0,0,0,0,0,0.01,0,0.01
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+"125","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S64_SAR_FINAL.pdf",0.02,0,0.01,0,0.01,0,0,0,0.05,0,0,0,0,0,0,0.01,0.02,0,0.01,0,0.01
+"126","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S67_Final_SAR.pdf",0.03,0,0.01,0,0.03,0,0,0,0.04,0,0,0.01,0,0,0,0.03,0.04,0,0.01,0,0.01
+"127","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/S72_SAR_FINAL.pdf",0.01,0,0.01,0,0.02,0,0,0,0.04,0,0,0,0,0,0,0.06,0.06,0,0.03,0,0.03
+"128","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SA BSB 2018.pdf",0.01,0,0.01,0,0,0,0,0,0.05,0,0.01,0,0,0,0,0.03,0.02,0,0,0,0.02
+"129","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR_60_SA_Red_Porgy_SAR_4.9.2020.pdf",0.01,0,0.01,0,0,0,0,0,0.06,0,0.01,0,0,0,0,0.04,0.03,0,0.01,0,0.02
+"130","NOAA-SEFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SEFSC/SEDAR65_FullSAR_12.8.2020_V3.pdf",0.04,0,0,0,0.01,0,0,0,0.02,0,0.02,0,0,0.01,0,0,0,0,0.01,0,0.01
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+"134","NOAA-SWFSC","C:/Users/bai.li/Documents/GitHub/fishdictionary/StockAssessment/NOAA-SWFSC/SC14-SA-WP-11 ISC18 Shortfin Mako Stock Assessment.pdf",0.1,0,0,0,0.07,0,0,0,0,0,0,0.01,0,0.01,0,0,0,0,0.01,0,0.01
+"Sum",NA,NA,11.14,0.02,3.2,0.03,2.42,0.86,0.19,0,2.79,0.1,0.5,0.12,0.06,0.42,0.03,3.1,1.92,0.29,1.26,0.05,1.52
diff --git a/_pkgdown.yml b/_pkgdown.yml
index 05efa19..8516f37 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -1,11 +1,49 @@
+development:
+  mode: auto
+
+reference:
+- title: Dictionary Terms
+  contents:
+  - AgeComposition
+  - Biomass
+  - Catch
+  - CatchPerUnitEffort
+  - Cohort
+  - FishingMortalityAtMaximumSustainableYield
+  - Forecast
+  - InstantaneousFishingMortalityRate
+  - InstaneousMortalityRate
+  - Landings
+  - LengthComposition
+  - MaximumSustainableYield
+  - NaturalLogOfUnfishedRecruitment
+  - NumbersAtAge
+  - PlusGroup
+  - Projection
+  - Recruits
+  - Sex
+  - SpawnerPerRecruit
+  - SpawningBiomass
+  - Unfished
+  - Weight
+  
+- title: R Functions
+  contents:
+  - add_object
+  - read_in
+  - shiny_dd
+  - validate_Rd
+  
+
 navbar:
   structure:
     left:
     - home
     - reference
+    - articles
+    right:
     - github
     - issue
-    - article
 
   components:
     home:
@@ -13,20 +51,17 @@ navbar:
       href: index.html
 
     reference:
-      text: Functions
+      text: Reference
       icon: far fa-file-code fa-lg
       href: reference/index.html
-
+    
     github:
       text: Source Code
       icon: fab fa-github fa-lg
-      href: https://github.com/nmfs-fish-tools/data_dictionary/
-
+      href: https://github.com/nmfs-fish-tools/fishdictionary
+    
     issue:
       text: Issues
       icon: fas fa-question-circle fa-lg
-      href: https://github.com/nmfs-fish-tools/data_dictionary/issues/
-
-    articles:
-      text: Vignettes
-      icon: fas fa-file-contract fa-lg
+      href: https://github.com/nmfs-fish-tools/fishdictionary/issues
+      
\ No newline at end of file
diff --git a/docs/CAPAM2022.Rmd b/docs/CAPAM2022.Rmd
deleted file mode 100644
index a59c2ff..0000000
--- a/docs/CAPAM2022.Rmd
+++ /dev/null
@@ -1,174 +0,0 @@
----
-title:  "A dictionary for stock assessment"
-subtitle: "to improve clarity and interoperability of different modeling software."
-author: "Chantel Wetzel<sup>1</sup>, Christine Stawitz <sup>2</sup>, Bai Li<sup>3</sup>,<br> Kelli Johnson<sup>1</sup>, Giselle Schmitz<sup>2</sup> <br>1 NOAA Fisheries,NWFSC, Seattle, WA <br>2 NOAA Fisheries, OST, Seattle, WA<br> 3 ECS in support of NOAA Fisheries <br> "
-output:
-  xaringan::moon_reader:
-    css: ["xaringan-themer.css", "slides-style.css", "tufte.css"]
-    lib_dir: libs
-    nature:
-      ratio: '4:3'
-      highlightStyle: github
-      highlightLines: true
-      countIncrementalSlides: false
-      slideNumberFormat: |
-        <div class="progress-bar-container">
-          <div class="progress-bar" style="width: calc( (%current% - 1) / (%total% - 1) * 100%);">
-          </div>
-        </div>`
----
-layout: true
-
-.footnote[U.S. Department of Commerce | National Oceanic and Atmospheric Administration | National Marine Fisheries Service]
-
-
-```{r setup, include=FALSE}
-options(htmltools.dir.version = FALSE)
-require(here)
-require(dplyr)
-require(tidyr)
-require(ggplot2)
-```
-
-```{r xaringan-tile-view, echo=FALSE}
-# this gives you a tile navigation if you type "O" at any time
-xaringanExtra::use_tile_view()
-```
----
-# Shift to bring data science tools and workflows into science
-
-```{r openscapes, echo=FALSE, out.width="600px", fig.align='center'}
-knitr::include_graphics("./static/pictures/openscapes.png")
-```
-.footnote[Lowndes et al. 2017 <br><br>]
-
----
-# However, workflow standardization is needed to utilize the tools
-
-* The tool is one step of a workflow
-
-```{r dataone, echo=FALSE, out.width="500px", fig.align='center'}
-knitr::include_graphics("./static/pictures/dataone.png")
-```
-
-.footnote[Reichman et al. 2011. <br><br>]
-
----
-# Protocols and schema 
-.pull-left[
-```{r htpp, echo = FALSE, out.height = "200px"}
-knitr::include_graphics("./static/pictures/http.png")
-```
-]
-.pull-right[
-```{r schema, echo=FALSE, out.height = "200px"}
-knitr::include_graphics("./static/pictures/schema.png")
-```
-]
-
-Web technologies have advanced so quickly in part due to standard formats and structures.
-
----
-# We are a long way from this in fisheries
-
-.pull-left[
-```{r andre, echo=FALSE}
-knitr::include_graphics("./static/pictures/Andre_portrait_FINAL_SCAN.jpg")
-```
-]
-.pull-right[
-.bluebox[
-"There's no common method or definition for what a projection is." Andr&eacute;, in August 2022
-]
-]
-
----
-# In other words..
-
-```{r echo=FALSE, out.height="500px"}
-knitr::include_graphics("./static/pictures/standards_2x.png")
-```
-
-
----
-# A step in the right direction
-
-```{r, echo=FALSE, out.height="400px"}
-knitr::include_graphics("./static/pictures/continuum.png")
-```
-
-
----
-# This is not a new idea
-* NMFS glossary [Blackhart, Stanton, and Shimada, 2006](http://www.st.nmfs.gov/st4/documents/F_Glossary.pdf)
-* ICES [DATSU](http://datsu.ices.dk/web/selRep.aspx)
-```{r, echo=FALSE, out.height="400px"}
-knitr::include_graphics("./static/pictures/Sarda4.png")
-```
-
-
----
-# Total use across 20 terms
-```{r texttotal, echo=FALSE, out.width="800px"}
-knitr::include_graphics("./static/pictures/summedacross.png")
-```
-
-
-.footnote[Wetzel et al. In internal review. <br><br>]
----
-# Use across NOAA Fisheries science centers
-
-```{r textanalysis, echo=FALSE, out.width="700px", fig.align='center'}
-knitr::include_graphics("./static/pictures/baichart.png")
-```
-The x axis represents alternative text representations of the same term.
-
-
-.footnote[Wetzel et al. In internal review.]
-
----
-# {fishdictionary} an `R` package 
-
-```{r echo=FALSE, out.width="400px", fig.align='center'}
-knitr::include_graphics("./inst/figures/imgfile.png")
-```
-
-
-.footnote[Wetzel et al. In internal review. <br> <br>]
-
----
-# An entry
-
-```{r, echo=FALSE, out.width="800px", fig.align="center"}
-knitr::include_graphics("./static/pictures/entry.png")
-```
-
----
-# Uses a common file format with a validator in JSON
-
-```{r validator, echo=FALSE, out.width="700px", fig.align="center"}
-knitr::include_graphics("./static/pictures/flowchart.png")
-```
-
-
----
-class: middle
-
-# https://github.org/nmfs-fish-tools/fishdictionary
-
-
----
-# Increasing coordination and interdisciplinarity
-
-* Gives a common language across silos and disciplines
-* Rise of code and tool sharing across the US
-* We are creating a platform but need others to help populate it!
-
----
-# Next steps
-
-* Adding an entry via the web application
-* Search and filtering
-* What is the peer review process for dictionary entries?
-* Synergy with international standardization efforts
-* What would help you contribute?
\ No newline at end of file
diff --git a/docs/CAPAM2022.html b/docs/CAPAM2022.html
deleted file mode 100644
index a1a63a0..0000000
--- a/docs/CAPAM2022.html
+++ /dev/null
@@ -1,287 +0,0 @@
-<!DOCTYPE html>
-<html lang="" xml:lang="">
-  <head>
-    <title>A dictionary for stock assessment</title>
-    <meta charset="utf-8" />
-    <meta name="author" content="Chantel Wetzel1, Christine Stawitz 2, Bai Li3,  Kelli Johnson1, Giselle Schmitz2  1 NOAA Fisheries,NWFSC, Seattle, WA  2 NOAA Fisheries, OST, Seattle, WA  3 ECS in support of NOAA Fisheries  " />
-    <script src="libs/header-attrs/header-attrs.js"></script>
-    <link href="libs/tile-view/tile-view.css" rel="stylesheet" />
-    <script src="libs/tile-view/tile-view.js"></script>
-    <link rel="stylesheet" href="xaringan-themer.css" type="text/css" />
-    <link rel="stylesheet" href="slides-style.css" type="text/css" />
-    <link rel="stylesheet" href="tufte.css" type="text/css" />
-  </head>
-  <body>
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-class: center, middle, inverse, title-slide
-
-.title[
-# A dictionary for stock assessment
-]
-.subtitle[
-## to improve clarity and interoperability of different modeling software.
-]
-.author[
-### Chantel Wetzel<sup>1</sup>, Christine Stawitz <sup>2</sup>, Bai Li<sup>3</sup>,<br> Kelli Johnson<sup>1</sup>, Giselle Schmitz<sup>2</sup> <br>1 NOAA Fisheries,NWFSC, Seattle, WA <br>2 NOAA Fisheries, OST, Seattle, WA<br> 3 ECS in support of NOAA Fisheries <br>
-]
-
----
-
-layout: true
-
-.footnote[U.S. Department of Commerce | National Oceanic and Atmospheric Administration | National Marine Fisheries Service]
-
-
-
-
-
----
-# Shift to bring data science tools and workflows into science
-
-&lt;img src="./static/pictures/openscapes.png" width="600px" style="display: block; margin: auto;" /&gt;
-.footnote[Lowndes et al. 2017 &lt;br&gt;&lt;br&gt;]
-
----
-# However, workflow standardization is needed to utilize the tools
-
-* The tool is one step of a workflow
-
-&lt;img src="./static/pictures/dataone.png" width="500px" style="display: block; margin: auto;" /&gt;
-
-.footnote[Reichman et al. 2011. &lt;br&gt;&lt;br&gt;]
-
----
-# Protocols and schema 
-.pull-left[
-&lt;img src="./static/pictures/http.png" height="200px" /&gt;
-]
-.pull-right[
-&lt;img src="./static/pictures/schema.png" height="200px" /&gt;
-]
-
-Web technologies have advanced so quickly in part due to standard formats and structures.
-
----
-# We are a long way from this in fisheries
-
-.pull-left[
-![](./static/pictures/Andre_portrait_FINAL_SCAN.jpg)&lt;!-- --&gt;
-]
-.pull-right[
-.bluebox[
-"There's no common method or definition for what a projection is." Andr&amp;eacute;, in August 2022
-]
-]
-
----
-# In other words..
-
-&lt;img src="./static/pictures/standards_2x.png" height="500px" /&gt;
-
-
----
-# A step in the right direction
-
-&lt;img src="./static/pictures/continuum.png" height="400px" /&gt;
-
-
----
-# This is not a new idea
-* NMFS glossary [Blackhart, Stanton, and Shimada, 2006](http://www.st.nmfs.gov/st4/documents/F_Glossary.pdf)
-* ICES [DATSU](http://datsu.ices.dk/web/selRep.aspx)
-&lt;img src="./static/pictures/Sarda4.png" height="400px" /&gt;
-
-
----
-# Total use across 20 terms
-&lt;img src="./static/pictures/summedacross.png" width="800px" /&gt;
-
-
-.footnote[Wetzel et al. In internal review. &lt;br&gt;&lt;br&gt;]
----
-# Use across NOAA Fisheries science centers
-
-&lt;img src="./static/pictures/baichart.png" width="700px" style="display: block; margin: auto;" /&gt;
-The x axis represents alternative text representations of the same term.
-
-
-.footnote[Wetzel et al. In internal review.]
-
----
-# {fishdictionary} an `R` package 
-
-&lt;img src="./inst/figures/imgfile.png" width="400px" style="display: block; margin: auto;" /&gt;
-
-
-.footnote[Wetzel et al. In internal review. &lt;br&gt; &lt;br&gt;]
-
----
-# An entry
-
-&lt;img src="./static/pictures/entry.png" width="800px" style="display: block; margin: auto;" /&gt;
-
----
-# Uses a common file format with a validator in JSON
-
-&lt;img src="./static/pictures/flowchart.png" width="700px" style="display: block; margin: auto;" /&gt;
-
-
----
-class: middle
-
-# https://github.org/nmfs-fish-tools/fishdictionary
-
-
----
-# Increasing coordination and interdisciplinarity
-
-* Gives a common language across silos and disciplines
-* Rise of code and tool sharing across the US
-* We are creating a platform but need others to help populate it!
-
----
-# Next steps
-
-* Adding an entry via the web application
-* Search and filtering
-* What is the peer review process for dictionary entries?
-* Synergy with international standardization efforts
-* What would help you contribute?
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diff --git a/docs/xaringan-themer.css b/docs/xaringan-themer.css
deleted file mode 100644
index 95aa912..0000000
--- a/docs/xaringan-themer.css
+++ /dev/null
@@ -1,274 +0,0 @@
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- *
- *  Changes made to this file directly will be overwritten
- *  if you used xaringanthemer in your xaringan slides Rmd
- *
- *  Issues or likes?
- *    - https://github.com/gadenbuie/xaringanthemer
- *    - https://www.garrickadenbuie.com
- *
- *  Need help? Try:
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- *    - ?xaringanthemer::style_xaringan
- *    - xaringan wiki: https://github.com/yihui/xaringan/wiki
- *    - remarkjs wiki: https://github.com/gnab/remark/wiki
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diff --git a/stockassessmentdictionary.Rproj b/fishdictionary.Rproj
similarity index 100%
rename from stockassessmentdictionary.Rproj
rename to fishdictionary.Rproj
diff --git a/inst/Shiny/manifest.json b/inst/Shiny/manifest.json
index 3882b02..43b6adb 100644
--- a/inst/Shiny/manifest.json
+++ b/inst/Shiny/manifest.json
@@ -1,7 +1,7 @@
 {
   "version": 1,
   "locale": "en_US",
-  "platform": "4.2.0",
+  "platform": "4.3.2",
   "metadata": {
     "appmode": "shiny",
     "primary_rmd": null,
@@ -12,14 +12,14 @@
   "packages": {
     "MASS": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "MASS",
         "Priority": "recommended",
-        "Version": "7.3-57",
-        "Date": "2022-04-05",
-        "Revision": "$Rev: 3564 $",
-        "Depends": "R (>= 3.3.0), grDevices, graphics, stats, utils",
+        "Version": "7.3-60",
+        "Date": "2023-05-02",
+        "Revision": "$Rev: 3621 $",
+        "Depends": "R (>= 4.0), grDevices, graphics, stats, utils",
         "Imports": "methods",
         "Suggests": "lattice, nlme, nnet, survival",
         "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"),\n                    email = \"ripley@stats.ox.ac.uk\"),\n\t     person(\"Bill\", \"Venables\", role = \"ctb\"),\n\t     person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"),\n\t     person(\"Kurt\", \"Hornik\", role = \"trl\",\n                     comment = \"partial port ca 1998\"),\n\t     person(\"Albrecht\", \"Gebhardt\", role = \"trl\",\n                     comment = \"partial port ca 1998\"),\n\t     person(\"David\", \"Firth\", role = \"ctb\"))",
@@ -31,57 +31,51 @@
         "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
         "Contact": "<MASS@stats.ox.ac.uk>",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-04-19 04:13:16 UTC; ripley",
+        "Packaged": "2023-05-02 16:42:41 UTC; ripley",
         "Author": "Brian Ripley [aut, cre, cph],\n  Bill Venables [ctb],\n  Douglas M. Bates [ctb],\n  Kurt Hornik [trl] (partial port ca 1998),\n  Albrecht Gebhardt [trl] (partial port ca 1998),\n  David Firth [ctb]",
         "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-04-22 11:45:27 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-06-23 00:59:18 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-05-04 07:32:21 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2023-10-31 14:05:09 UTC; windows",
         "Archs": "x64"
       }
     },
     "Matrix": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "Matrix",
-        "Version": "1.4-1",
-        "Date": "2022-03-21",
+        "Version": "1.6-1.1",
+        "Date": "2023-09-08",
         "Priority": "recommended",
         "Title": "Sparse and Dense Matrix Classes and Methods",
+        "Description": "A rich hierarchy of sparse and dense matrix classes,\n\tincluding general, symmetric, triangular, and diagonal matrices\n\twith numeric, logical, or pattern entries.  Efficient methods for\n\toperating on such matrices, often wrapping the 'BLAS', 'LAPACK',\n\tand 'SuiteSparse' libraries.",
+        "License": "GPL (>= 2) | file LICENCE",
+        "URL": "https://Matrix.R-forge.R-project.org",
+        "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
         "Contact": "Matrix-authors@R-project.org",
-        "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
-        "Authors@R": "c(person(\"Douglas\",\"Bates\", role=\"aut\")\n , person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"mmaechler+Matrix@gmail.com\",\n          comment = c(ORCID = \"0000-0002-8685-9910\"))\n , person(\"Mikael\", \"Jagan\", role=\"aut\",\n           comment = \"new 'packedMatrix' class plus subset/diag/.. methods in C\")\n , person(\"Timothy A.\", \"Davis\", role=\"ctb\",\n           comment = c(\"SuiteSparse and 'cs' C libraries, notably CHOLMOD, AMD;\n\t\t       collaborators listed in\n\t\t\tdir(pattern = '^[A-Z]+[.]txt$', full.names=TRUE,\n\t\t\t    system.file('doc', 'SuiteSparse', package='Matrix'))\"))\n , person(\"Jens\", \"Oehlschlägel\", role=\"ctb\", comment=\"initial nearPD()\")\n , person(\"Jason\", \"Riedy\", role=\"ctb\",\n          comment = c(\"condest() and onenormest() for octave\",\n \t  \t      \"Copyright: Regents of the University of California\"))\n , person(\"R Core Team\", role = \"ctb\", comment=\"base R matrix implementation\")\n )",
-        "Description": "A rich hierarchy of matrix classes, including triangular,\n   symmetric, and diagonal matrices, both dense and sparse and with\n   pattern, logical and numeric entries.   Numerous methods for and\n   operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.",
-        "Depends": "R (>= 3.5.0)",
-        "Imports": "methods, graphics, grid, stats, utils, lattice",
-        "Suggests": "expm, MASS",
-        "Enhances": "MatrixModels, graph, SparseM, sfsmisc, igraph, maptools, sp,\nspdep",
-        "EnhancesNote": "line 2: for \"Rd xrefs\"",
-        "Encoding": "UTF-8",
+        "Authors@R": "\n\tc(person(\"Douglas\", \"Bates\", role = \"aut\",\n\t         comment = c(ORCID = \"0000-0001-8316-9503\")),\n\t  person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"),\n\t         email = \"mmaechler+Matrix@gmail.com\",\n\t         comment = c(ORCID = \"0000-0002-8685-9910\")),\n\t  person(\"Mikael\", \"Jagan\", role = \"aut\",\n\t         comment = c(ORCID = \"0000-0002-3542-2938\")),\n\t  person(\"Timothy A.\", \"Davis\", role = \"ctb\",\n\t         comment = c(ORCID = \"0000-0001-7614-6899\",\n\t                     \"SuiteSparse libraries, notably CHOLMOD and AMD\",\n\t                     \"collaborators listed in dir(pattern=\\\"^[A-Z]+[.]txt$\\\", full.names=TRUE, system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"))\")),\n\t  person(\"Jens\", \"Oehlschlägel\", role = \"ctb\",\n\t         comment = \"initial nearPD()\"),\n\t  person(\"Jason\", \"Riedy\", role = \"ctb\",\n\t         comment = c(ORCID = \"0000-0002-4345-4200\",\n\t                     \"GNU Octave's condest() and onenormest()\",\n\t                     \"Copyright: Regents of the University of California\")),\n\t  person(\"R Core Team\", role = \"ctb\",\n\t         comment = \"base R's matrix implementation\"))",
+        "Depends": "R (>= 3.5.0), methods",
+        "Imports": "grDevices, graphics, grid, lattice, stats, utils",
+        "Suggests": "MASS, datasets, sfsmisc",
+        "Enhances": "SparseM, graph",
         "LazyData": "no",
-        "LazyDataNote": "not possible, since we use data/*.R *and* our classes",
+        "LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
         "BuildResaveData": "no",
-        "License": "GPL (>= 2) | file LICENCE",
-        "URL": "https://Matrix.R-forge.R-project.org/,\nhttps://Matrix.R-forge.R-project.org/doxygen/",
-        "BugReports": "https://R-forge.R-project.org/tracker/?atid=294?group_id=61",
-        "Author": "Douglas Bates [aut],\n  Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),\n  Mikael Jagan [aut] (new 'packedMatrix' class plus subset/diag/..\n    methods in C),\n  Timothy A. Davis [ctb] (SuiteSparse and 'cs' C libraries, notably\n    CHOLMOD, AMD; collaborators listed in dir(pattern =\n    '^[A-Z]+[.]txt$', full.names=TRUE, system.file('doc',\n    'SuiteSparse', package='Matrix'))),\n  Jens Oehlschlägel [ctb] (initial nearPD()),\n  Jason Riedy [ctb] (condest() and onenormest() for octave, Copyright:\n    Regents of the University of California),\n  R Core Team [ctb] (base R matrix implementation)",
-        "Repository": "CRAN",
-        "Repository/R-Forge/Project": "matrix",
-        "Repository/R-Forge/Revision": "3446",
-        "Repository/R-Forge/DateTimeStamp": "2022-03-21 17:52:00",
-        "Date/Publication": "2022-03-23 16:30:08 UTC",
+        "Encoding": "UTF-8",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-21 18:13:03 UTC; rforge",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-04-22 12:21:22 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Packaged": "2023-09-08 10:37:27 UTC; maechler",
+        "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>),\n  Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),\n  Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>),\n  Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>,\n    SuiteSparse libraries, notably CHOLMOD and AMD, collaborators\n    listed in dir(pattern=\"^[A-Z]+[.]txt$\", full.names=TRUE,\n    system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"))),\n  Jens Oehlschlägel [ctb] (initial nearPD()),\n  Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU\n    Octave's condest() and onenormest(), Copyright: Regents of the\n    University of California),\n  R Core Team [ctb] (base R's matrix implementation)",
+        "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
+        "Repository": "CRAN",
+        "Date/Publication": "2023-09-18 17:40:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2023-10-31 14:05:48 UTC; windows",
         "Archs": "x64"
       }
     },
     "R6": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "R6",
         "Title": "Encapsulated Classes with Reference Semantics",
@@ -100,12 +94,12 @@
         "Maintainer": "Winston Chang <winston@stdout.org>",
         "Repository": "CRAN",
         "Date/Publication": "2021-08-19 14:00:05 UTC",
-        "Built": "R 4.2.0; ; 2022-05-24 00:40:37 UTC; windows"
+        "Built": "R 4.3.2; ; 2024-02-08 01:36:58 UTC; windows"
       }
     },
     "RColorBrewer": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "RColorBrewer",
         "Version": "1.1-3",
@@ -121,17 +115,17 @@
         "NeedsCompilation": "no",
         "Repository": "CRAN",
         "Date/Publication": "2022-04-03 19:20:13 UTC",
-        "Built": "R 4.2.0; ; 2022-04-24 01:19:40 UTC; windows"
+        "Built": "R 4.3.1; ; 2023-10-20 00:51:12 UTC; windows"
       }
     },
     "Rcpp": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "Rcpp",
         "Title": "Seamless R and C++ Integration",
-        "Version": "1.0.9",
-        "Date": "2022-07-02",
+        "Version": "1.0.12",
+        "Date": "2024-01-08",
         "Author": "Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,\n Nathan Russell, Inaki Ucar, Douglas Bates and John Chambers",
         "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
         "Description": "The 'Rcpp' package provides R functions as well as C++ classes which\n offer a seamless integration of R and C++. Many R data types and objects can be\n mapped back and forth to C++ equivalents which facilitates both writing of new\n code as well as easier integration of third-party libraries. Documentation\n about 'Rcpp' is provided by several vignettes included in this package, via the\n 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and\n Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,\n <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,\n <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
@@ -142,18 +136,18 @@
         "BugReports": "https://github.com/RcppCore/Rcpp/issues",
         "MailingList": "rcpp-devel@lists.r-forge.r-project.org",
         "RoxygenNote": "6.1.1",
+        "Encoding": "UTF-8",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-07-02 15:34:02 UTC; edd",
+        "Packaged": "2024-01-08 12:50:16 UTC; edd",
         "Repository": "CRAN",
-        "Date/Publication": "2022-07-08 23:10:06 UTC",
-        "Built": "R 4.2.1; x86_64-w64-mingw32; 2022-07-21 00:44:08 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-01-09 08:20:35 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:58 UTC; windows",
         "Archs": "x64"
       }
     },
     "base64enc": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "base64enc",
         "Version": "0.1-3",
@@ -169,104 +163,107 @@
         "Packaged": "2015-02-04 20:31:00 UTC; svnuser",
         "Repository": "CRAN",
         "Date/Publication": "2015-07-28 08:03:37",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-04-24 01:19:39 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Built": "R 4.3.1; x86_64-w64-mingw32; 2023-10-20 00:51:10 UTC; windows",
         "Archs": "x64"
       }
     },
     "bslib": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "bslib",
         "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
-        "Version": "0.3.1",
-        "Authors@R": "c(\n    person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")),\n    person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"),\n    person(family = \"RStudio\", role = \"cph\"),\n    person(family = \"Bootstrap contributors\", role = \"ctb\",\n    comment = \"Bootstrap library\"),\n    person(family = \"Twitter, Inc\", role = \"cph\",\n    comment = \"Bootstrap library\"),\n    person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"),\n    comment = \"Bootstrap colorpicker library\"),\n    person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"),\n    comment = \"Bootswatch library\"),\n    person(family = \"PayPal\", role = c(\"ctb\", \"cph\"),\n    comment = \"Bootstrap accessibility plugin\")\n    )",
-        "Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports both 'Bootstrap' 3 and 4 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.",
-        "Depends": "R (>= 2.10)",
-        "Imports": "grDevices, htmltools (>= 0.5.2), jsonlite, sass (>= 0.4.0),\njquerylib (>= 0.1.3), rlang",
-        "Suggests": "shiny (>= 1.6.0), rmarkdown (>= 2.7), thematic, knitr,\ntestthat, withr, rappdirs, curl, magrittr",
+        "Version": "0.7.0",
+        "Authors@R": "c(\n    person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0002-4958-2844\")),\n    person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"),\n    person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-7111-0077\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")),\n    person(, \"Bootstrap contributors\", role = \"ctb\",\n           comment = \"Bootstrap library\"),\n    person(, \"Twitter, Inc\", role = \"cph\",\n           comment = \"Bootstrap library\"),\n    person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"),\n           comment = \"Bootstrap colorpicker library\"),\n    person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"),\n           comment = \"Bootswatch library\"),\n    person(, \"PayPal\", role = c(\"ctb\", \"cph\"),\n           comment = \"Bootstrap accessibility plugin\")\n  )",
+        "Description": "Simplifies custom 'CSS' styling of both 'shiny' and\n    'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as\n    well as their various 'Bootswatch' themes. An interactive widget is\n    also provided for previewing themes in real time.",
         "License": "MIT + file LICENSE",
-        "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2",
-        "Config/testthat/edition": "3",
-        "Collate": "'bootswatch.R' 'bs-current-theme.R' 'bs-dependencies.R'\n'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'utils.R'\n'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R'\n'deprecated.R' 'files.R' 'imports.R' 'nav-items.R'\n'nav-update.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R'\n'precompiled.R' 'print.R' 'shiny-devmode.R' 'utils-shiny.R'\n'utils-tags.R' 'version-default.R' 'versions.R'",
         "URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
         "BugReports": "https://github.com/rstudio/bslib/issues",
-        "Config/Needs/website": "rsconnect, renv, r-lib/pkgdown, apreshill/quillt",
+        "Depends": "R (>= 2.10)",
+        "Imports": "base64enc, cachem, fastmap (>= 1.1.1), grDevices, htmltools\n(>= 0.5.8), jquerylib (>= 0.1.3), jsonlite, lifecycle, memoise\n(>= 2.0.1), mime, rlang, sass (>= 0.4.9)",
+        "Suggests": "bsicons, curl, fontawesome, future, ggplot2, knitr, magrittr,\nrappdirs, rmarkdown (>= 2.7), shiny (>= 1.8.1), testthat,\nthematic, withr",
+        "Config/Needs/deploy": "BH, chiflights22, colourpicker, commonmark, cpp11,\ncpsievert/chiflights22, cpsievert/histoslider, dplyr, DT,\nggplot2, ggridges, gt, hexbin, histoslider, htmlwidgets,\nlattice, leaflet, lubridate, modelr, plotly, reactable,\nreshape2, rprojroot, rsconnect, rstudio/shiny, scales, styler,\ntibble",
+        "Config/Needs/routine": "chromote, desc, renv",
+        "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue,\nhtmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr,\nrprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
+        "Config/testthat/edition": "3",
+        "Config/testthat/parallel": "true",
+        "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile,\ntheme-*, rmd-*",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.3.1",
+        "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R'\n'bs-dependencies.R' 'bs-global.R' 'bs-remove.R'\n'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R'\n'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R'\n'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R'\n'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R'\n'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R'\n'layout.R' 'nav-items.R' 'nav-update.R' 'navs-legacy.R'\n'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R'\n'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R'\n'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R'\n'value-box.R' 'version-default.R' 'versions.R'",
         "NeedsCompilation": "no",
-        "Packaged": "2021-10-06 14:12:58 UTC; cpsievert",
-        "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),\n  Joe Cheng [aut],\n  RStudio [cph],\n  Bootstrap contributors [ctb] (Bootstrap library),\n  Twitter, Inc [cph] (Bootstrap library),\n  Javi Aguilar [ctb, cph] (Bootstrap colorpicker library),\n  Thomas Park [ctb, cph] (Bootswatch library),\n  PayPal [ctb, cph] (Bootstrap accessibility plugin)",
-        "Maintainer": "Carson Sievert <carson@rstudio.com>",
+        "Packaged": "2024-03-28 21:43:16 UTC; cpsievert",
+        "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),\n  Joe Cheng [aut],\n  Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>),\n  Posit Software, PBC [cph, fnd],\n  Bootstrap contributors [ctb] (Bootstrap library),\n  Twitter, Inc [cph] (Bootstrap library),\n  Javi Aguilar [ctb, cph] (Bootstrap colorpicker library),\n  Thomas Park [ctb, cph] (Bootswatch library),\n  PayPal [ctb, cph] (Bootstrap accessibility plugin)",
+        "Maintainer": "Carson Sievert <carson@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-10-06 15:10:05 UTC",
-        "Built": "R 4.2.0; ; 2022-05-29 02:46:04 UTC; windows"
+        "Date/Publication": "2024-03-29 01:00:03 UTC",
+        "Built": "R 4.3.3; ; 2024-06-03 02:11:23 UTC; windows"
       }
     },
     "cachem": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "cachem",
-        "Version": "1.0.6",
+        "Version": "1.1.0",
         "Title": "Cache R Objects with Automatic Pruning",
         "Description": "Key-value stores with automatic pruning. Caches can limit\n    either their total size or the age of the oldest object (or both),\n    automatically pruning objects to maintain the constraints.",
-        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", , \"winston@rstudio.com\", c(\"aut\", \"cre\")),\n    person(family = \"RStudio\", role = c(\"cph\", \"fnd\")))",
+        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")),\n    person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
         "License": "MIT + file LICENSE",
         "Encoding": "UTF-8",
         "ByteCompile": "true",
         "URL": "https://cachem.r-lib.org/, https://github.com/r-lib/cachem",
-        "Imports": "rlang, fastmap",
+        "Imports": "rlang, fastmap (>= 1.2.0)",
         "Suggests": "testthat",
-        "RoxygenNote": "7.1.1",
+        "RoxygenNote": "7.2.3",
+        "Config/Needs/routine": "lobstr",
+        "Config/Needs/website": "pkgdown",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-08-19 21:07:46 UTC; barret",
-        "Author": "Winston Chang [aut, cre],\n  RStudio [cph, fnd]",
-        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Packaged": "2024-05-15 15:54:22 UTC; winston",
+        "Author": "Winston Chang [aut, cre],\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Winston Chang <winston@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-08-19 21:30:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 01:32:06 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-05-16 09:50:11 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 01:31:25 UTC; windows",
         "Archs": "x64"
       }
     },
     "cli": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "cli",
         "Title": "Helpers for Developing Command Line Interfaces",
-        "Version": "3.3.0",
-        "Authors@R": "c(\n    person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")),\n    person(\"Hadley\", \"Wickham\", role = \"ctb\"),\n    person(\"Kirill\", \"Müller\", role = \"ctb\"),\n    person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Version": "3.6.2",
+        "Authors@R": "c(\n    person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")),\n    person(\"Hadley\", \"Wickham\", role = \"ctb\"),\n    person(\"Kirill\", \"Müller\", role = \"ctb\"),\n    person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\",\n           comment = c(ORCID = \"0000-0002-5329-5987\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
         "Description": "A suite of tools to build attractive command line interfaces\n    ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,\n    etc. Supports custom themes via a 'CSS'-like language. It also\n    contains a number of lower level 'CLI' elements: rules, boxes, trees,\n    and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI\n    colors and text styles as well.",
         "License": "MIT + file LICENSE",
-        "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli#readme",
+        "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
         "BugReports": "https://github.com/r-lib/cli/issues",
         "Depends": "R (>= 3.4)",
-        "Imports": "glue (>= 1.6.0), utils",
-        "Suggests": "asciicast, callr, covr, digest, grDevices, htmltools,\nhtmlwidgets, knitr, methods, mockery, processx, ps (>=\n1.3.4.9000), rlang, rmarkdown, rstudioapi, shiny, testthat,\ntibble, whoami, withr",
-        "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc,\nfansi, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
+        "Imports": "utils",
+        "Suggests": "callr, covr, crayon, digest, glue (>= 1.6.0), grDevices,\nhtmltools, htmlwidgets, knitr, methods, mockery, processx, ps\n(>= 1.3.4.9000), rlang (>= 1.0.2.9003), rmarkdown, rprojroot,\nrstudioapi, testthat, tibble, whoami, withr",
+        "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc,\nfansi, prettyunits, sessioninfo, tidyverse/tidytemplate,\nusethis, vctrs",
         "Config/testthat/edition": "3",
         "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2.9000",
+        "RoxygenNote": "7.2.3",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-04-21 12:31:05 UTC; gaborcsardi",
-        "Author": "Gábor Csárdi [aut, cre],\n  Hadley Wickham [ctb],\n  Kirill Müller [ctb],\n  RStudio [cph, fnd]",
+        "Packaged": "2023-12-10 22:38:10 UTC; gaborcsardi",
+        "Author": "Gábor Csárdi [aut, cre],\n  Hadley Wickham [ctb],\n  Kirill Müller [ctb],\n  Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>),\n  Posit Software, PBC [cph, fnd]",
         "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-04-25 10:00:06 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 01:33:29 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-12-11 07:40:13 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:59 UTC; windows",
         "Archs": "x64"
       }
     },
     "colorspace": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "colorspace",
-        "Version": "2.0-3",
-        "Date": "2022-02-19",
+        "Version": "2.1-0",
+        "Date": "2023-01-23",
         "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
         "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"),\n             person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\",\n                    comment = c(ORCID = \"0000-0002-3224-8858\")),\n             person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\",\n\t\t    comment = c(ORCID = \"0000-0003-4198-9911\")),\n             person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\",\n                    comment = c(ORCID = \"0000-0001-9032-8912\")),\n             person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\",\n                    comment = c(ORCID = \"0000-0002-3798-5507\")),\n             person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\",\n                    comment = c(ORCID = \"0000-0002-7470-9261\")),\n             person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\",\n                    comment = c(ORCID = \"0000-0001-7346-3047\")),\n             person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\",\n                    comment = c(ORCID = \"0000-0003-0918-3766\")))",
         "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS,\n             CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB.\n\t     Qualitative, sequential, and diverging color palettes based on HCL colors\n\t     are provided along with corresponding ggplot2 color scales.\n\t     Color palette choice is aided by an interactive app (with either a Tcl/Tk\n\t     or a shiny graphical user interface) and shiny apps with an HCL color picker and a\n\t     color vision deficiency emulator. Plotting functions for displaying\n\t     and assessing palettes include color swatches, visualizations of the\n\t     HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation\n\t     functions include: desaturation, lightening/darkening, mixing, and\n\t     simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly).\n\t     Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/>\n\t     and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical\n\t     Software, <doi:10.18637/jss.v096.i01>).",
@@ -278,84 +275,83 @@
         "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
         "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
         "LazyData": "yes",
-        "RoxygenNote": "7.1.2",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.2.3",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-02-19 11:47:52 UTC; zeileis",
+        "Packaged": "2023-01-23 08:50:11 UTC; zeileis",
         "Author": "Ross Ihaka [aut],\n  Paul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>),\n  Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),\n  Jason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>),\n  Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>),\n  Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),\n  Claire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>),\n  Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)",
         "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-02-21 09:50:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 00:42:39 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-01-23 11:40:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-11 01:42:54 UTC; windows",
         "Archs": "x64"
       }
     },
     "commonmark": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "commonmark",
         "Type": "Package",
         "Title": "High Performance CommonMark and Github Markdown Rendering in R",
-        "Version": "1.8.0",
+        "Version": "1.9.1",
         "Authors@R": "c(\n    person(\"Jeroen\", \"Ooms\", ,\"jeroen@berkeley.edu\", role = c(\"aut\", \"cre\"),\n        comment = c(ORCID = \"0000-0002-4035-0289\")),\n    person(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))",
-        "URL": "https://docs.ropensci.org/commonmark/ (docs)\nhttps://github.com/r-lib/commonmark (devel)\nhttps://github.github.com/gfm/ (spec)",
+        "URL": "https://docs.ropensci.org/commonmark/\nhttps://r-lib.r-universe.dev/commonmark\nhttps://github.github.com/gfm/ (spec)",
         "BugReports": "https://github.com/r-lib/commonmark/issues",
         "Description": "The CommonMark specification defines a rationalized version of markdown\n    syntax. This package uses the 'cmark' reference implementation for converting\n    markdown text into various formats including html, latex and groff man. In\n    addition it exposes the markdown parse tree in xml format. Also includes opt-in\n    support for GFM extensions including tables, autolinks, and strikethrough text.",
         "License": "BSD_2_clause + file LICENSE",
         "Suggests": "curl, testthat, xml2",
-        "RoxygenNote": "7.1.2",
+        "RoxygenNote": "7.2.3",
         "Language": "en-US",
         "Encoding": "UTF-8",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-09 14:29:25 UTC; jeroen",
+        "Packaged": "2024-01-30 11:29:56 UTC; jeroen",
         "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),\n  John MacFarlane [cph] (Author of cmark)",
         "Maintainer": "Jeroen Ooms <jeroen@berkeley.edu>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-09 15:40:07 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:41:01 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-01-30 12:40:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:37:01 UTC; windows",
         "Archs": "x64"
       }
     },
     "crayon": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "crayon",
         "Title": "Colored Terminal Output",
-        "Version": "1.5.1",
+        "Version": "1.5.2",
         "Authors@R": "c(\n    person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\",\n    role = c(\"aut\", \"cre\")),\n    person(\n    \"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\",\n    role=c(\"ctb\"))\n    )",
-        "Description": "Colored terminal output on terminals that support 'ANSI'\n    color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI'\n    color support is automatically detected. Colors and highlighting can\n    be combined and nested. New styles can also be created easily.\n    This package was inspired by the 'chalk' 'JavaScript' project.",
+        "Description": "The crayon package is now superseded. Please use the 'cli' package\n    for new projects.\n    Colored terminal output on terminals that support 'ANSI'\n    color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI'\n    color support is automatically detected. Colors and highlighting can\n    be combined and nested. New styles can also be created easily.\n    This package was inspired by the 'chalk' 'JavaScript' project.",
         "License": "MIT + file LICENSE",
         "URL": "https://github.com/r-lib/crayon#readme",
         "BugReports": "https://github.com/r-lib/crayon/issues",
-        "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R'\n'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.r'\n'ansi-palette.R' 'combine.r' 'string.r' 'utils.r'\n'crayon-package.r' 'disposable.r' 'has_ansi.r' 'has_color.r'\n'link.R' 'styles.r' 'machinery.r' 'parts.r' 'print.r'\n'style-var.r' 'show.r' 'string_operations.r'",
+        "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R'\n'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.r'\n'ansi-palette.R' 'combine.r' 'string.r' 'utils.r'\n'crayon-package.r' 'disposable.r' 'enc-utils.R' 'has_ansi.r'\n'has_color.r' 'link.R' 'styles.r' 'machinery.r' 'parts.r'\n'print.r' 'style-var.r' 'show.r' 'string_operations.r'",
         "Imports": "grDevices, methods, utils",
         "Suggests": "mockery, rstudioapi, testthat, withr",
         "RoxygenNote": "7.1.2",
         "Encoding": "UTF-8",
         "NeedsCompilation": "no",
-        "Packaged": "2022-03-26 16:18:07 UTC; gaborcsardi",
+        "Packaged": "2022-09-29 06:24:10 UTC; gaborcsardi",
         "Author": "Gábor Csárdi [aut, cre],\n  Brodie Gaslam [ctb]",
         "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-26 17:30:05 UTC",
-        "Built": "R 4.2.0; ; 2022-05-24 00:40:40 UTC; windows"
+        "Date/Publication": "2022-09-29 16:20:24 UTC",
+        "Built": "R 4.3.2; ; 2024-02-08 01:36:59 UTC; windows"
       }
     },
     "digest": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "digest",
-        "Author": "Dirk Eddelbuettel <edd@debian.org> with contributions \n by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,\n Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,\n Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx, \n Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell,\n Matthew de Queljoe, Ion Suruceanu, Bill Denney, Dirk Schumacher,\n and Winston Chang.",
-        "Version": "0.6.29",
-        "Date": "2021-11-30",
+        "Author": "Dirk Eddelbuettel <edd@debian.org> with contributions\n by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,\n Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,\n Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,\n Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell,\n Matthew de Queljoe, Ion Suruceanu, Bill Denney, Dirk Schumacher,\n Winston Chang, Dean Attali, and Michael Chirico.",
+        "Version": "0.6.35",
+        "Date": "2024-03-10",
         "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
         "Title": "Create Compact Hash Digests of R Objects",
-        "Description": "Implementation of a function 'digest()' for the creation of hash\n digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',\n 'xxhash', 'murmurhash', 'spookyhash' and 'blake3' algorithms) permitting easy\n comparison of R language objects, as well as functions such as'hmac()' to\n create hash-based message authentication code. Please note that this package\n is not meant to be deployed for cryptographic purposes for which more\n comprehensive (and widely tested) libraries such as 'OpenSSL' should be\n used.",
-        "URL": "https://github.com/eddelbuettel/digest,\nhttp://dirk.eddelbuettel.com/code/digest.html",
+        "Description": "Implementation of a function 'digest()' for the creation of hash\n digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',\n 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128'\n algorithms) permitting easy comparison of R language objects, as well as functions\n such as'hmac()' to create hash-based message authentication code. Please note that\n this package is not meant to be deployed for cryptographic purposes for which more\n comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
+        "URL": "https://github.com/eddelbuettel/digest,\nhttps://dirk.eddelbuettel.com/code/digest.html",
         "BugReports": "https://github.com/eddelbuettel/digest/issues",
         "Depends": "R (>= 3.3.0)",
         "Imports": "utils",
@@ -363,17 +359,16 @@
         "Suggests": "tinytest, simplermarkdown",
         "VignetteBuilder": "simplermarkdown",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-11-30 23:41:39 UTC; edd",
+        "Packaged": "2024-03-10 19:40:54 UTC; edd",
         "Repository": "CRAN",
-        "Date/Publication": "2021-12-01 07:40:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:29 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-03-11 14:10:06 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 00:44:47 UTC; windows",
         "Archs": "x64"
       }
     },
     "ellipsis": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "ellipsis",
         "Version": "0.3.2",
@@ -394,19 +389,18 @@
         "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
         "Repository": "CRAN",
         "Date/Publication": "2021-04-29 12:40:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 01:32:05 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-15 02:20:40 UTC; windows",
         "Archs": "x64"
       }
     },
     "fansi": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "fansi",
         "Title": "ANSI Control Sequence Aware String Functions",
         "Description": "Counterparts to R string manipulation functions that account for\n   the effects of ANSI text formatting control sequences.",
-        "Version": "1.0.3",
+        "Version": "1.0.6",
         "Authors@R": "c(\n    person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\",\n    role=c(\"aut\", \"cre\")),\n    person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"),\n    person(family=\"R Core Team\",\n    email=\"R-core@r-project.org\", role=\"cph\",\n    comment=\"UTF8 byte length calcs from src/util.c\"\n    ))",
         "Depends": "R (>= 3.1.0)",
         "License": "GPL-2 | GPL-3",
@@ -415,324 +409,322 @@
         "VignetteBuilder": "knitr",
         "Suggests": "unitizer, knitr, rmarkdown",
         "Imports": "grDevices, utils",
-        "RoxygenNote": "7.1.1",
+        "RoxygenNote": "7.2.3",
         "Encoding": "UTF-8",
         "Collate": "'constants.R' 'fansi-package.R' 'internal.R' 'load.R' 'misc.R'\n'nchar.R' 'strwrap.R' 'strtrim.R' 'strsplit.R' 'substr2.R'\n'trimws.R' 'tohtml.R' 'unhandled.R' 'normalize.R' 'sgr.R'",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-24 00:52:26 UTC; bg",
+        "Packaged": "2023-12-06 00:59:41 UTC; bg",
         "Author": "Brodie Gaslam [aut, cre],\n  Elliott Sales De Andrade [ctb],\n  R Core Team [cph] (UTF8 byte length calcs from src/util.c)",
         "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-24 07:50:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:41:00 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-12-08 03:30:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:59 UTC; windows",
         "Archs": "x64"
       }
     },
     "farver": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Type": "Package",
         "Package": "farver",
         "Title": "High Performance Colour Space Manipulation",
-        "Version": "2.1.1",
-        "Authors@R": "c(\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = c(\"cre\", \"aut\"),\n           comment = c(ORCID = \"0000-0002-5147-4711\")),\n    person(\"Berendea\", \"Nicolae\", role = \"aut\",\n           comment = \"Author of the ColorSpace C++ library\"),\n    person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-2444-4226\"))\n  )",
-        "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
+        "Version": "2.1.2",
+        "Authors@R": "c(\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"),\n           comment = c(ORCID = \"0000-0002-5147-4711\")),\n    person(\"Berendea\", \"Nicolae\", role = \"aut\",\n           comment = \"Author of the ColorSpace C++ library\"),\n    person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-2444-4226\")),\n    person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
         "Description": "The encoding of colour can be handled in many different ways,\n    using different colour spaces. As different colour spaces have\n    different uses, efficient conversion between these representations are\n    important. The 'farver' package provides a set of functions that gives\n    access to very fast colour space conversion and comparisons\n    implemented in C++, and offers speed improvements over the\n    'convertColor' function in the 'grDevices' package.",
         "License": "MIT + file LICENSE",
         "URL": "https://farver.data-imaginist.com,\nhttps://github.com/thomasp85/farver",
         "BugReports": "https://github.com/thomasp85/farver/issues",
         "Suggests": "covr, testthat (>= 3.0.0)",
-        "Encoding": "UTF-8",
-        "RoxygenNote": "7.2.0",
-        "SystemRequirements": "C++11",
         "Config/testthat/edition": "3",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.3.1",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-07-06 12:54:24 UTC; thomas",
-        "Author": "Thomas Lin Pedersen [cre, aut]\n    (<https://orcid.org/0000-0002-5147-4711>),\n  Berendea Nicolae [aut] (Author of the ColorSpace C++ library),\n  Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>)",
+        "Packaged": "2024-05-13 08:31:27 UTC; thomas",
+        "Author": "Thomas Lin Pedersen [cre, aut]\n    (<https://orcid.org/0000-0002-5147-4711>),\n  Berendea Nicolae [aut] (Author of the ColorSpace C++ library),\n  Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),\n  Posit, PBC [cph, fnd]",
+        "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-07-06 13:50:02 UTC",
-        "Built": "R 4.2.1; x86_64-w64-mingw32; 2022-07-10 00:40:55 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-05-13 09:33:09 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 00:44:46 UTC; windows",
         "Archs": "x64"
       }
     },
     "fastmap": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "fastmap",
         "Title": "Fast Data Structures",
-        "Version": "1.1.0",
-        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", email = \"winston@rstudio.com\", role = c(\"aut\", \"cre\")),\n    person(given = \"RStudio\", role = c(\"cph\", \"fnd\")),\n    person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\")\n    )",
+        "Version": "1.2.0",
+        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")),\n    person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")),\n    person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\")\n    )",
         "Description": "Fast implementation of data structures, including a key-value\n    store, stack, and queue. Environments are commonly used as key-value stores\n    in R, but every time a new key is used, it is added to R's global symbol\n    table, causing a small amount of memory leakage. This can be problematic in\n    cases where many different keys are used. Fastmap avoids this memory leak\n    issue by implementing the map using data structures in C++.",
         "License": "MIT + file LICENSE",
         "Encoding": "UTF-8",
-        "LazyData": "true",
-        "RoxygenNote": "7.1.1",
+        "RoxygenNote": "7.2.3",
         "Suggests": "testthat (>= 2.1.1)",
         "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap",
         "BugReports": "https://github.com/r-lib/fastmap/issues",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-01-25 20:28:54 UTC; winston",
-        "Author": "Winston Chang [aut, cre],\n  RStudio [cph, fnd],\n  Tessil [cph] (hopscotch_map library)",
-        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Packaged": "2024-05-14 17:54:13 UTC; winston",
+        "Author": "Winston Chang [aut, cre],\n  Posit Software, PBC [cph, fnd],\n  Tessil [cph] (hopscotch_map library)",
+        "Maintainer": "Winston Chang <winston@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-01-25 21:00:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:39 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-05-15 09:00:07 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 00:45:00 UTC; windows",
         "Archs": "x64"
       }
     },
     "fontawesome": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Type": "Package",
         "Package": "fontawesome",
-        "Version": "0.2.2",
+        "Version": "0.5.2",
         "Title": "Easily Work with 'Font Awesome' Icons",
         "Description": "Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'\n    documents and 'Shiny' apps. These icons can be inserted into HTML content\n    through inline 'SVG' tags or 'i' tags. There is also a utility function for\n    exporting 'Font Awesome' icons as 'PNG' images for those situations where\n    raster graphics are needed.",
-        "Authors@R": "c(\n    person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0003-3925-190X\")),\n    person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", role = \"ctb\",\n           comment = c(ORCID = \"0000-0003-4474-2498\")),\n    person(\"Winston\", \"Chang\", , \"winston@rstudio.com\", role = \"ctb\"),\n    person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"),\n           comment = \"Font-Awesome font\"),\n    person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n    )",
+        "Authors@R": "c(\n    person(\"Richard\", \"Iannone\", , \"rich@posit.co\", c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0003-3925-190X\")),\n    person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"ctb\",\n           comment = c(ORCID = \"0000-0003-4474-2498\")),\n    person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"ctb\"),\n    person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"),\n           comment = \"Font-Awesome font\"),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n    )",
         "License": "MIT + file LICENSE",
-        "URL": "https://github.com/rstudio/fontawesome",
+        "URL": "https://github.com/rstudio/fontawesome,\nhttps://rstudio.github.io/fontawesome/",
         "BugReports": "https://github.com/rstudio/fontawesome/issues",
         "Encoding": "UTF-8",
         "ByteCompile": "true",
-        "RoxygenNote": "7.1.1",
+        "RoxygenNote": "7.2.3",
         "Depends": "R (>= 3.3.0)",
-        "Imports": "rlang (>= 0.4.10), htmltools (>= 0.5.1.1)",
-        "Suggests": "covr, knitr, testthat, rsvg",
+        "Imports": "rlang (>= 1.0.6), htmltools (>= 0.5.1.1)",
+        "Suggests": "covr, dplyr (>= 1.0.8), knitr (>= 1.31), testthat (>= 3.0.0),\nrsvg",
+        "Config/testthat/edition": "3",
         "NeedsCompilation": "no",
-        "Packaged": "2021-07-02 18:33:03 UTC; rich",
-        "Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),\n  Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),\n  Winston Chang [ctb],\n  Dave Gandy [ctb, cph] (Font-Awesome font),\n  RStudio [cph, fnd]",
-        "Maintainer": "Richard Iannone <rich@rstudio.com>",
+        "Packaged": "2023-08-19 02:32:12 UTC; rich",
+        "Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),\n  Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),\n  Winston Chang [ctb],\n  Dave Gandy [ctb, cph] (Font-Awesome font),\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Richard Iannone <rich@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-07-02 18:50:02 UTC",
-        "Built": "R 4.2.0; ; 2022-06-21 02:01:00 UTC; windows"
+        "Date/Publication": "2023-08-19 04:52:40 UTC",
+        "Built": "R 4.3.2; ; 2024-02-15 03:09:22 UTC; windows"
       }
     },
     "fs": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "fs",
         "Title": "Cross-Platform File System Operations Based on 'libuv'",
-        "Version": "1.5.2",
-        "Authors@R": "c(\n    person(\"Jim\", \"Hester\", role = \"aut\"),\n    person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", \"aut\"),\n    person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")),\n    person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"),\n    person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"),\n    person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n    )",
-        "Description": "A cross-platform interface to file system operations, built on\n  top of the 'libuv' C library.",
-        "Depends": "R (>= 3.1)",
+        "Version": "1.6.4",
+        "Authors@R": "c(\n    person(\"Jim\", \"Hester\", role = \"aut\"),\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"),\n    person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")),\n    person(\"libuv project contributors\", role = \"cph\",\n           comment = \"libuv library\"),\n    person(\"Joyent, Inc. and other Node contributors\", role = \"cph\",\n           comment = \"libuv library\"),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "A cross-platform interface to file system operations, built\n    on top of the 'libuv' C library.",
         "License": "MIT + file LICENSE",
-        "Encoding": "UTF-8",
-        "ByteCompile": "true",
-        "Imports": "methods",
-        "SystemRequirements": "GNU make",
-        "RoxygenNote": "7.1.2",
         "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
         "BugReports": "https://github.com/r-lib/fs/issues",
-        "Copyright": "file COPYRIGHTS",
-        "Suggests": "testthat, covr, pillar (>= 1.0.0), tibble (>= 1.1.0), crayon,\nrmarkdown, knitr, withr, spelling, vctrs (>= 0.3.0)",
+        "Depends": "R (>= 3.6)",
+        "Imports": "methods",
+        "Suggests": "covr, crayon, knitr, pillar (>= 1.0.0), rmarkdown, spelling,\ntestthat (>= 3.0.0), tibble (>= 1.1.0), vctrs (>= 0.3.0), withr",
         "VignetteBuilder": "knitr",
+        "ByteCompile": "true",
+        "Config/Needs/website": "tidyverse/tidytemplate",
+        "Config/testthat/edition": "3",
+        "Copyright": "file COPYRIGHTS",
+        "Encoding": "UTF-8",
         "Language": "en-US",
+        "RoxygenNote": "7.2.3",
+        "SystemRequirements": "GNU make",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-12-08 16:14:56 UTC; gaborcsardi",
-        "Author": "Jim Hester [aut],\n  Hadley Wickham [aut],\n  Gábor Csárdi [aut, cre],\n  libuv project contributors [cph] (libuv library),\n  Joyent, Inc. and other Node contributors [cph] (libuv library),\n  RStudio [cph, fnd]",
+        "Packaged": "2024-04-25 11:57:22 UTC; gaborcsardi",
+        "Author": "Jim Hester [aut],\n  Hadley Wickham [aut],\n  Gábor Csárdi [aut, cre],\n  libuv project contributors [cph] (libuv library),\n  Joyent, Inc. and other Node contributors [cph] (libuv library),\n  Posit Software, PBC [cph, fnd]",
         "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-12-08 23:00:08 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:41:46 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-04-25 12:50:02 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 00:44:48 UTC; windows",
         "Archs": "x64"
       }
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     "ggplot2": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "ggplot2",
-        "Version": "3.3.6",
+        "Version": "3.5.1",
         "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics",
-        "Description": "A system for 'declaratively' creating graphics,\n    based on \"The Grammar of Graphics\". You provide the data, tell 'ggplot2'\n    how to map variables to aesthetics, what graphical primitives to use,\n    and it takes care of the details.",
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-        "Depends": "R (>= 3.3)",
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+        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\",\n           comment = c(ORCID = \"0000-0003-4757-117X\")),\n    person(\"Winston\", \"Chang\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-1576-2126\")),\n    person(\"Lionel\", \"Henry\", role = \"aut\"),\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0002-5147-4711\")),\n    person(\"Kohske\", \"Takahashi\", role = \"aut\"),\n    person(\"Claus\", \"Wilke\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-7470-9261\")),\n    person(\"Kara\", \"Woo\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-5125-4188\")),\n    person(\"Hiroaki\", \"Yutani\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-3385-7233\")),\n    person(\"Dewey\", \"Dunnington\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-9415-4582\")),\n    person(\"Teun\", \"van den Brand\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-9335-7468\")),\n    person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "A system for 'declaratively' creating graphics, based on \"The\n    Grammar of Graphics\". You provide the data, tell 'ggplot2' how to map\n    variables to aesthetics, what graphical primitives to use, and it\n    takes care of the details.",
         "License": "MIT + file LICENSE",
         "URL": "https://ggplot2.tidyverse.org,\nhttps://github.com/tidyverse/ggplot2",
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         "NeedsCompilation": "no",
-        "Packaged": "2022-04-27 07:43:19 UTC; thomas",
-        "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),\n  Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>),\n  Lionel Henry [aut],\n  Thomas Lin Pedersen [aut, cre]\n    (<https://orcid.org/0000-0002-5147-4711>),\n  Kohske Takahashi [aut],\n  Claus Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),\n  Kara Woo [aut] (<https://orcid.org/0000-0002-5125-4188>),\n  Hiroaki Yutani [aut] (<https://orcid.org/0000-0002-3385-7233>),\n  Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>),\n  RStudio [cph, fnd]",
-        "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@rstudio.com>",
+        "Packaged": "2024-04-22 10:39:16 UTC; thomas",
+        "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),\n  Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>),\n  Lionel Henry [aut],\n  Thomas Lin Pedersen [aut, cre]\n    (<https://orcid.org/0000-0002-5147-4711>),\n  Kohske Takahashi [aut],\n  Claus Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),\n  Kara Woo [aut] (<https://orcid.org/0000-0002-5125-4188>),\n  Hiroaki Yutani [aut] (<https://orcid.org/0000-0002-3385-7233>),\n  Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>),\n  Teun van den Brand [aut] (<https://orcid.org/0000-0002-9335-7468>),\n  Posit, PBC [cph, fnd]",
+        "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-05-03 07:00:14 UTC",
-        "Built": "R 4.2.0; ; 2022-06-07 03:22:00 UTC; windows"
+        "Date/Publication": "2024-04-23 08:00:08 UTC",
+        "Built": "R 4.3.3; ; 2024-06-24 02:12:29 UTC; windows"
       }
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     "glue": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "glue",
         "Title": "Interpreted String Literals",
-        "Version": "1.6.2",
-        "Authors@R": "c(\n    person(\"Jim\", \"Hester\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-2739-7082\")),\n    person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0002-6983-2759\")),\n    person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Version": "1.7.0",
+        "Authors@R": "c(\n    person(\"Jim\", \"Hester\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-2739-7082\")),\n    person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0002-6983-2759\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
         "Description": "An implementation of interpreted string literals, inspired by\n    Python's Literal String Interpolation\n    <https://www.python.org/dev/peps/pep-0498/> and Docstrings\n    <https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted\n    String Literals\n    <https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.",
         "License": "MIT + file LICENSE",
-        "URL": "https://github.com/tidyverse/glue, https://glue.tidyverse.org/",
+        "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue",
         "BugReports": "https://github.com/tidyverse/glue/issues",
-        "Depends": "R (>= 3.4)",
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         "Imports": "methods",
-        "Suggests": "covr, crayon, DBI, dplyr, forcats, ggplot2, knitr, magrittr,\nmicrobenchmark, R.utils, rmarkdown, rprintf, RSQLite, stringr,\ntestthat (>= 3.0.0), vctrs (>= 0.3.0), waldo (>= 0.3.0), withr",
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         "VignetteBuilder": "knitr",
         "ByteCompile": "true",
-        "Config/Needs/website": "hadley/emo, tidyverse/tidytemplate",
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         "Encoding": "UTF-8",
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-        "Packaged": "2022-02-23 22:50:40 UTC; jenny",
-        "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),\n  Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),\n  RStudio [cph, fnd]",
-        "Maintainer": "Jennifer Bryan <jenny@rstudio.com>",
+        "Packaged": "2024-01-08 16:10:57 UTC; jenny",
+        "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),\n  Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Jennifer Bryan <jenny@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-02-24 07:50:20 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:35 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-01-09 23:13:08 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:58 UTC; windows",
         "Archs": "x64"
       }
     },
     "gtable": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "gtable",
         "Title": "Arrange 'Grobs' in Tables",
-        "Version": "0.3.0",
-        "Authors@R": "\n    c(person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = c(\"aut\", \"cre\"),\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Thomas Lin\",\n             family = \"Pedersen\",\n             role = \"aut\",\n             email = \"thomas.pedersen@rstudio.com\"),\n      person(given = \"RStudio\",\n             role = \"cph\"))",
-        "Description": "Tools to make it easier to work with \"tables\" of\n    'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a\n    grid along with a list of grobs and their placement in the grid. Further the\n    package makes it easy to manipulate and combine 'gtable' objects so that \n    complex compositions can be build up sequentially.",
-        "License": "GPL-2",
-        "Depends": "R (>= 3.0)",
-        "Imports": "grid",
-        "Suggests": "covr, testthat, knitr, rmarkdown, ggplot2, profvis",
-        "Encoding": "UTF-8",
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-        "URL": "https://github.com/r-lib/gtable",
+        "Version": "0.3.5",
+        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"),\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The\n    'gtable' package defines a 'gtable' grob class that specifies a grid\n    along with a list of grobs and their placement in the grid. Further\n    the package makes it easy to manipulate and combine 'gtable' objects\n    so that complex compositions can be built up sequentially.",
+        "License": "MIT + file LICENSE",
+        "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable",
         "BugReports": "https://github.com/r-lib/gtable/issues",
+        "Depends": "R (>= 3.5)",
+        "Imports": "cli, glue, grid, lifecycle, rlang (>= 1.1.0)",
+        "Suggests": "covr, ggplot2, knitr, profvis, rmarkdown, testthat (>= 3.0.0)",
         "VignetteBuilder": "knitr",
+        "Config/Needs/website": "tidyverse/tidytemplate",
+        "Config/testthat/edition": "3",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.3.1",
         "NeedsCompilation": "no",
-        "Packaged": "2019-03-25 14:56:43 UTC; thomas",
-        "Author": "Hadley Wickham [aut, cre],\n  Thomas Lin Pedersen [aut],\n  RStudio [cph]",
-        "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
+        "Packaged": "2024-04-22 10:46:27 UTC; thomas",
+        "Author": "Hadley Wickham [aut],\n  Thomas Lin Pedersen [aut, cre],\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2019-03-25 19:50:02 UTC",
-        "Built": "R 4.2.0; ; 2022-06-07 00:30:28 UTC; windows"
+        "Date/Publication": "2024-04-22 20:40:02 UTC",
+        "Built": "R 4.3.3; ; 2024-06-03 01:51:16 UTC; windows"
       }
     },
     "htmltools": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
-        "Package": "htmltools",
         "Type": "Package",
+        "Package": "htmltools",
         "Title": "Tools for HTML",
-        "Version": "0.5.2",
-        "Authors@R": "c(\n  person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"),\n  person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")),\n  person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@rstudio.com\", comment = c(ORCID = \"0000-0001-9986-114X\")),\n  person(\"Winston\", \"Chang\", role = \"aut\", email = \"winston@rstudio.com\", comment = c(ORCID = \"0000-0002-1576-2126\")),\n  person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@rstudio.com\"),\n  person(\"Jeff\", \"Allen\", role = \"aut\", email = \"jeff@rstudio.com\"),\n  person(family = \"RStudio\", role = \"cph\")\n )",
+        "Version": "0.5.8.1",
+        "Authors@R": "c(\n    person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"),\n    person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0002-4958-2844\")),\n    person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\",\n           comment = c(ORCID = \"0000-0001-9986-114X\")),\n    person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-1576-2126\")),\n    person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"),\n    person(\"Jeff\", \"Allen\", role = \"aut\"),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
         "Description": "Tools for HTML generation and output.",
-        "Depends": "R (>= 2.14.1)",
-        "Imports": "utils, digest, grDevices, base64enc, rlang (>= 0.4.10),\nfastmap",
-        "Suggests": "markdown, testthat, withr, Cairo, ragg, shiny",
-        "Enhances": "knitr",
         "License": "GPL (>= 2)",
-        "URL": "https://github.com/rstudio/htmltools",
+        "URL": "https://github.com/rstudio/htmltools,\nhttps://rstudio.github.io/htmltools/",
         "BugReports": "https://github.com/rstudio/htmltools/issues",
-        "RoxygenNote": "7.1.1",
+        "Depends": "R (>= 2.14.1)",
+        "Imports": "base64enc, digest, fastmap (>= 1.1.0), grDevices, rlang (>=\n1.0.0), utils",
+        "Suggests": "Cairo, markdown, ragg, shiny, testthat, withr",
+        "Enhances": "knitr",
+        "Config/Needs/check": "knitr",
+        "Config/Needs/website": "rstudio/quillt, bench",
         "Encoding": "UTF-8",
-        "Collate": "'colors.R' 'html_dependency.R' 'html_escape.R' 'html_print.R'\n'images.R' 'known_tags.R' 'selector.R' 'shim.R' 'tag_query.R'\n'utils.R' 'tags.R' 'template.R'",
+        "RoxygenNote": "7.3.1",
+        "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R'\n'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R'\n'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R'\n'template.R'",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-08-17 17:26:06 UTC; cpsievert",
-        "Author": "Joe Cheng [aut],\n  Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),\n  Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),\n  Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>),\n  Yihui Xie [aut],\n  Jeff Allen [aut],\n  RStudio [cph]",
-        "Maintainer": "Carson Sievert <carson@rstudio.com>",
+        "Packaged": "2024-04-02 14:26:15 UTC; cpsievert",
+        "Author": "Joe Cheng [aut],\n  Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),\n  Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),\n  Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>),\n  Yihui Xie [aut],\n  Jeff Allen [aut],\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Carson Sievert <carson@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-08-25 13:50:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 01:31:32 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-04-04 05:03:00 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 01:31:24 UTC; windows",
         "Archs": "x64"
       }
     },
     "httpuv": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
-        "Package": "httpuv",
         "Type": "Package",
-        "Encoding": "UTF-8",
+        "Package": "httpuv",
         "Title": "HTTP and WebSocket Server Library",
-        "Version": "1.6.5",
-        "Authors@R": "c(\n    person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@rstudio.com\"),\n    person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"),\n    person(family = \"RStudio, PBC\", role = \"cph\"),\n    person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"),\n    person(\"Jeroen\", \"Ooms\", role = \"ctb\"),\n    person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\")\n    )",
-        "Copyright": "RStudio, PBC; Joyent, Inc.; Nginx Inc.; Igor Sysoev; Niels\nProvos; Internet Systems Consortium, Inc.; Alexander Chemeris;\nBerkeley Software Design; Google Inc.; Sony Mobile\nCommunications AB; Alexander Peslyak; Free Software Foundation,\nInc.; X Consortium; Ben Noordhuis; StrongLoop, Inc.; Saúl\nIbarra Corretgé; Bert Belder; Fedor Indutny; libuv project;\nRefael Ackermann; Kenneth MacKay; Emergya; Diego Pettenò; xine\nproject, The Regents of the University of California, Dariusz\nDwornikowski",
-        "Description": "Provides low-level socket and protocol support for handling\n    HTTP and WebSocket requests directly from within R. It is primarily\n    intended as a building block for other packages, rather than making it\n    particularly easy to create complete web applications using httpuv alone.\n    httpuv is built on top of the libuv and http-parser C libraries, both of\n    which were developed by Joyent, Inc. (See LICENSE file for libuv and\n    http-parser license information.)",
+        "Version": "1.6.14",
+        "Authors@R": "c(\n    person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"),\n    person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")),\n    person(\"Posit, PBC\", \"fnd\", role = \"cph\"),\n    person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"),\n    person(\"Jeroen\", \"Ooms\", role = \"ctb\"),\n    person(\"Andrzej\", \"Krzemienski\", role = \"cph\",\n           comment = \"optional.hpp\"),\n    person(\"libuv project contributors\", role = \"cph\",\n           comment = \"libuv library, see src/libuv/AUTHORS file\"),\n    person(\"Joyent, Inc. and other Node contributors\", role = \"cph\",\n           comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"),\n    person(\"Niels\", \"Provos\", role = \"cph\",\n           comment = \"libuv subcomponent: tree.h\"),\n    person(\"Internet Systems Consortium, Inc.\", role = \"cph\",\n           comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"),\n    person(\"Alexander\", \"Chemeris\", role = \"cph\",\n           comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"),\n    person(\"Google, Inc.\", role = \"cph\",\n           comment = \"libuv subcomponent: pthread-fixes.c\"),\n    person(\"Sony Mobile Communcations AB\", role = \"cph\",\n           comment = \"libuv subcomponent: pthread-fixes.c\"),\n    person(\"Berkeley Software Design Inc.\", role = \"cph\",\n           comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"),\n    person(\"Kenneth\", \"MacKay\", role = \"cph\",\n           comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"),\n    person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\",\n           comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"),\n    person(\"Steve\", \"Reid\", role = \"aut\",\n           comment = \"SHA-1 implementation\"),\n    person(\"James\", \"Brown\", role = \"aut\",\n           comment = \"SHA-1 implementation\"),\n    person(\"Bob\", \"Trower\", role = \"aut\",\n           comment = \"base64 implementation\"),\n    person(\"Alexander\", \"Peslyak\", role = \"aut\",\n           comment = \"MD5 implementation\"),\n    person(\"Trantor Standard Systems\", role = \"cph\",\n           comment = \"base64 implementation\"),\n    person(\"Igor\", \"Sysoev\", role = \"cph\",\n           comment = \"http-parser\")\n  )",
+        "Description": "Provides low-level socket and protocol support for handling\n    HTTP and WebSocket requests directly from within R. It is primarily\n    intended as a building block for other packages, rather than making it\n    particularly easy to create complete web applications using httpuv\n    alone.  httpuv is built on top of the libuv and http-parser C\n    libraries, both of which were developed by Joyent, Inc. (See LICENSE\n    file for libuv and http-parser license information.)",
         "License": "GPL (>= 2) | file LICENSE",
-        "Depends": "R (>= 2.15.1)",
-        "Imports": "Rcpp (>= 1.0.7), utils, R6, promises, later (>= 0.8.0)",
-        "LinkingTo": "Rcpp, later",
         "URL": "https://github.com/rstudio/httpuv",
-        "SystemRequirements": "GNU make, C++11, zlib",
-        "RoxygenNote": "7.1.2",
-        "Suggests": "testthat, callr, curl, websocket",
-        "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R'\n'static_paths.R' 'utils.R'",
+        "BugReports": "https://github.com/rstudio/httpuv/issues",
+        "Depends": "R (>= 2.15.1)",
+        "Imports": "later (>= 0.8.0), promises, R6, Rcpp (>= 1.0.7), utils",
+        "Suggests": "callr, curl, testthat, websocket",
+        "LinkingTo": "later, Rcpp",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.3.1",
+        "SystemRequirements": "GNU make, zlib",
+        "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R'\n'staticServer.R' 'static_paths.R' 'utils.R'",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-01-04 21:27:22 UTC; winston",
-        "Author": "Joe Cheng [aut],\n  Winston Chang [aut, cre],\n  RStudio, PBC [cph],\n  Hector Corrada Bravo [ctb],\n  Jeroen Ooms [ctb],\n  Andrzej Krzemienski [cph] (optional.hpp)",
-        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Packaged": "2024-01-26 22:48:02 UTC; winston",
+        "Author": "Joe Cheng [aut],\n  Winston Chang [aut, cre],\n  Posit, PBC fnd [cph],\n  Hector Corrada Bravo [ctb],\n  Jeroen Ooms [ctb],\n  Andrzej Krzemienski [cph] (optional.hpp),\n  libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS\n    file),\n  Joyent, Inc. and other Node contributors [cph] (libuv library, see\n    src/libuv/AUTHORS file; and http-parser library, see\n    src/http-parser/AUTHORS file),\n  Niels Provos [cph] (libuv subcomponent: tree.h),\n  Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton\n    and inet_ntop, contained in src/libuv/src/inet.c),\n  Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from\n    msinttypes)),\n  Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c),\n  Sony Mobile Communcations AB [cph] (libuv subcomponent:\n    pthread-fixes.c),\n  Berkeley Software Design Inc. [cph] (libuv subcomponent:\n    android-ifaddrs.h, android-ifaddrs.c),\n  Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h,\n    android-ifaddrs.c),\n  Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph]\n    (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c),\n  Steve Reid [aut] (SHA-1 implementation),\n  James Brown [aut] (SHA-1 implementation),\n  Bob Trower [aut] (base64 implementation),\n  Alexander Peslyak [aut] (MD5 implementation),\n  Trantor Standard Systems [cph] (base64 implementation),\n  Igor Sysoev [cph] (http-parser)",
+        "Maintainer": "Winston Chang <winston@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-01-05 00:40:11 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 02:42:42 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-01-26 23:20:02 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-03-14 03:19:58 UTC; windows",
         "Archs": "x64"
       }
     },
     "isoband": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "isoband",
         "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation\nGrids",
-        "Version": "0.2.5",
-        "Authors@R": "\n    c(person(given = \"Claus O.\",\n             family = \"Wilke\",\n             role = c(\"aut\", \"cre\"),\n             email = \"wilke@austin.utexas.edu\",\n             comment = c(ORCID = \"0000-0002-7470-9261\")),\n      person(given = \"Thomas Lin\",\n             family = \"Pedersen\",\n             role = \"aut\",\n             email = \"thomasp85@gmail.com\",\n             comment = c(ORCID = \"0000-0002-5147-4711\")),\n      person(given = \"testthat and Catch authors\",\n             role = \"ctb\",\n             comment = \"testthat C++ testing code\"))",
-        "Description": "A fast C++ implementation to generate contour lines (isolines) and\n  contour polygons (isobands) from regularly spaced grids containing elevation data.",
-        "URL": "https://wilkelab.org/isoband/",
-        "BugReports": "https://github.com/wilkelab/isoband/issues",
+        "Version": "0.2.7",
+        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"),\n           comment = c(ORCID = \"0000-0003-4757-117X\")),\n    person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\",\n           comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")),\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\",\n           comment = c(ORCID = \"0000-0002-5147-4711\"))\n  )",
+        "Description": "A fast C++ implementation to generate contour lines\n    (isolines) and contour polygons (isobands) from regularly spaced grids\n    containing elevation data.",
         "License": "MIT + file LICENSE",
-        "Encoding": "UTF-8",
+        "URL": "https://isoband.r-lib.org",
+        "BugReports": "https://github.com/r-lib/isoband/issues",
         "Imports": "grid, utils",
-        "RoxygenNote": "7.1.1",
-        "Config/testthat/edition": "3",
         "Suggests": "covr, ggplot2, knitr, magick, microbenchmark, rmarkdown, sf,\ntestthat, xml2",
-        "SystemRequirements": "C++11",
         "VignetteBuilder": "knitr",
+        "Config/Needs/website": "tidyverse/tidytemplate",
+        "Config/testthat/edition": "3",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.2.3",
+        "SystemRequirements": "C++11",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-07-12 20:44:13 UTC; clauswilke",
-        "Author": "Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>),\n  Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>),\n  testthat and Catch authors [ctb] (testthat C++ testing code)",
-        "Maintainer": "Claus O. Wilke <wilke@austin.utexas.edu>",
+        "Packaged": "2022-12-19 20:10:02 UTC; hadleywickham",
+        "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),\n  Claus O. Wilke [aut] (Original author,\n    <https://orcid.org/0000-0002-7470-9261>),\n  Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>)",
+        "Maintainer": "Hadley Wickham <hadley@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-07-13 04:50:13 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-06-07 00:30:26 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2022-12-20 10:00:13 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-11 01:42:55 UTC; windows",
         "Archs": "x64"
       }
     },
     "jquerylib": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "jquerylib",
         "Title": "Obtain 'jQuery' as an HTML Dependency Object",
@@ -751,46 +743,45 @@
         "Maintainer": "Carson Sievert <carson@rstudio.com>",
         "Repository": "CRAN",
         "Date/Publication": "2021-04-26 17:10:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-29 02:05:56 UTC; windows"
+        "Built": "R 4.3.2; ; 2024-02-15 03:09:21 UTC; windows"
       }
     },
     "jsonlite": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "jsonlite",
-        "Version": "1.8.0",
+        "Version": "1.8.8",
         "Title": "A Simple and Robust JSON Parser and Generator for R",
         "License": "MIT + file LICENSE",
         "Depends": "methods",
         "Authors@R": "c(\n    person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroen@berkeley.edu\",\n      comment = c(ORCID = \"0000-0002-4035-0289\")),\n    person(\"Duncan\", \"Temple Lang\", role = \"ctb\"),\n    person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))",
-        "URL": "https://arxiv.org/abs/1403.2805 (paper)",
+        "URL": "https://jeroen.r-universe.dev/jsonlite\nhttps://arxiv.org/abs/1403.2805",
         "BugReports": "https://github.com/jeroen/jsonlite/issues",
         "Maintainer": "Jeroen Ooms <jeroen@berkeley.edu>",
         "VignetteBuilder": "knitr, R.rsp",
         "Description": "A reasonably fast JSON parser and generator, optimized for statistical \n    data and the web. Offers simple, flexible tools for working with JSON in R, and\n    is particularly powerful for building pipelines and interacting with a web API. \n    The implementation is based on the mapping described in the vignette (Ooms, 2014).\n    In addition to converting JSON data from/to R objects, 'jsonlite' contains \n    functions to stream, validate, and prettify JSON data. The unit tests included \n    with the package verify that all edge cases are encoded and decoded consistently \n    for use with dynamic data in systems and applications.",
-        "Suggests": "httr, curl, vctrs, testthat, knitr, rmarkdown, R.rsp, sf",
-        "RoxygenNote": "7.1.1",
+        "Suggests": "httr, vctrs, testthat, knitr, rmarkdown, R.rsp, sf",
+        "RoxygenNote": "7.2.3",
         "Encoding": "UTF-8",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-02-22 09:27:49 UTC; jeroen",
+        "Packaged": "2023-12-04 12:57:12 UTC; jeroen",
         "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),\n  Duncan Temple Lang [ctb],\n  Lloyd Hilaiel [cph] (author of bundled libyajl)",
         "Repository": "CRAN",
-        "Date/Publication": "2022-02-22 11:20:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:41:14 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-12-04 15:20:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:59 UTC; windows",
         "Archs": "x64"
       }
     },
     "labeling": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "labeling",
         "Type": "Package",
         "Title": "Axis Labeling",
-        "Version": "0.4.2",
-        "Date": "2020-10-15",
+        "Version": "0.4.3",
+        "Date": "2023-08-29",
         "Author": "Justin Talbot,",
         "Maintainer": "Nuno Sempere <nuno.semperelh@gmail.com>",
         "Description": "Functions which provide a range of axis labeling algorithms. ",
@@ -798,105 +789,103 @@
         "Collate": "'labeling.R'",
         "NeedsCompilation": "no",
         "Imports": "stats, graphics",
-        "Packaged": "2020-10-18 12:56:46 UTC; nuno",
+        "Packaged": "2023-08-29 21:01:57 UTC; loki",
         "Repository": "CRAN",
-        "Date/Publication": "2020-10-20 07:00:09 UTC",
-        "Built": "R 4.2.0; ; 2022-04-24 01:19:40 UTC; windows"
+        "Date/Publication": "2023-08-29 22:20:02 UTC",
+        "Built": "R 4.3.1; ; 2023-10-20 00:51:12 UTC; windows"
       }
     },
     "later": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "later",
         "Type": "Package",
         "Title": "Utilities for Scheduling Functions to Execute Later with Event\nLoops",
-        "Version": "1.3.0",
-        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"),\n    person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@rstudio.com\"),\n    person(family = \"RStudio\", role = \"cph\"),\n    person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"),\n    person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\")\n    )",
+        "Version": "1.3.2",
+        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"),\n    person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"),\n    person(family = \"Posit Software, PBC\", role = \"cph\"),\n    person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"),\n    person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\")\n    )",
         "Description": "Executes arbitrary R or C functions some time after the current\n    time, after the R execution stack has emptied. The functions are scheduled\n    in an event loop.",
-        "URL": "https://github.com/r-lib/later",
+        "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later",
         "BugReports": "https://github.com/r-lib/later/issues",
         "License": "MIT + file LICENSE",
         "Imports": "Rcpp (>= 0.12.9), rlang",
         "LinkingTo": "Rcpp",
-        "RoxygenNote": "7.1.1",
-        "SystemRequirements": "C++11",
+        "RoxygenNote": "7.2.3",
         "Suggests": "knitr, rmarkdown, testthat (>= 2.1.0)",
         "VignetteBuilder": "knitr",
         "Encoding": "UTF-8",
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-        "Packaged": "2021-08-18 14:03:28 UTC; barret",
-        "Author": "Winston Chang [aut, cre],\n  Joe Cheng [aut],\n  RStudio [cph],\n  Marcus Geelnard [ctb, cph] (TinyCThread library,\n    https://tinycthread.github.io/),\n  Evan Nemerson [ctb, cph] (TinyCThread library,\n    https://tinycthread.github.io/)",
-        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Packaged": "2023-12-06 00:38:14 UTC; cpsievert",
+        "Author": "Winston Chang [aut, cre],\n  Joe Cheng [aut],\n  Posit Software, PBC [cph],\n  Marcus Geelnard [ctb, cph] (TinyCThread library,\n    https://tinycthread.github.io/),\n  Evan Nemerson [ctb, cph] (TinyCThread library,\n    https://tinycthread.github.io/)",
+        "Maintainer": "Winston Chang <winston@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-08-18 16:30:06 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 01:31:38 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-12-06 09:10:05 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-15 02:20:48 UTC; windows",
         "Archs": "x64"
       }
     },
     "lattice": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "lattice",
-        "Version": "0.20-45",
-        "Date": "2021-09-18",
+        "Version": "0.21-9",
+        "Date": "2023-09-30",
         "Priority": "recommended",
         "Title": "Trellis Graphics for R",
-        "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"),\n\t            email = \"deepayan.sarkar@r-project.org\",\n\t\t    comment = c(ORCID = \"0000-0003-4107-1553\")),\n              person(\"Felix\", \"Andrews\", role = \"ctb\"),\n\t      person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"),\n\t      person(\"Neil\", \"Klepeis\", role = \"ctb\"),\n\t      person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"colorkey title\"),\n              person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"))",
+        "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"),\n\t            email = \"deepayan.sarkar@r-project.org\",\n\t\t    comment = c(ORCID = \"0000-0003-4107-1553\")),\n              person(\"Felix\", \"Andrews\", role = \"ctb\"),\n\t      person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"),\n\t      person(\"Neil\", \"Klepeis\", role = \"ctb\"),\n\t      person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"),\n              person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"),\n              person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"),\n\t      person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"),\n\t      person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\")\n\t      )",
         "Description": "A powerful and elegant high-level data visualization\n  system inspired by Trellis graphics, with an emphasis on\n  multivariate data. Lattice is sufficient for typical graphics needs,\n  and is also flexible enough to handle most nonstandard requirements.\n  See ?Lattice for an introduction.",
-        "Depends": "R (>= 3.0.0)",
-        "Suggests": "KernSmooth, MASS, latticeExtra",
+        "Depends": "R (>= 4.0.0)",
+        "Suggests": "KernSmooth, MASS, latticeExtra, colorspace",
         "Imports": "grid, grDevices, graphics, stats, utils",
         "Enhances": "chron",
         "LazyLoad": "yes",
         "LazyData": "yes",
         "License": "GPL (>= 2)",
-        "URL": "http://lattice.r-forge.r-project.org/",
+        "URL": "https://lattice.r-forge.r-project.org/",
         "BugReports": "https://github.com/deepayan/lattice/issues",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-09-22 09:17:07 UTC; deepayan",
-        "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>),\n  Felix Andrews [ctb],\n  Kevin Wright [ctb] (documentation),\n  Neil Klepeis [ctb],\n  Johan Larsson [ctb] (colorkey title),\n  Paul Murrell [ctb]",
+        "Packaged": "2023-09-30 22:29:13 UTC; deepayan",
+        "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>),\n  Felix Andrews [ctb],\n  Kevin Wright [ctb] (documentation),\n  Neil Klepeis [ctb],\n  Johan Larsson [ctb] (miscellaneous improvements),\n  Zhijian (Jason) Wen [cph] (filled contour code),\n  Paul Murrell [ctb],\n  Stefan Eng [ctb] (violin plot improvements),\n  Achim Zeileis [ctb] (modern colors)",
         "Maintainer": "Deepayan Sarkar <deepayan.sarkar@r-project.org>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-09-22 12:10:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-04-22 12:21:06 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-10-01 04:40:07 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2023-10-31 14:05:26 UTC; windows",
         "Archs": "x64"
       }
     },
     "lifecycle": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "lifecycle",
         "Title": "Manage the Life Cycle of your Package Functions",
-        "Version": "1.0.1",
-        "Authors@R": "\n    c(person(given = \"Lionel\",\n             family = \"Henry\",\n             role = c(\"aut\", \"cre\"),\n             email = \"lionel@rstudio.com\"),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\",\n             comment = c(ORCID = \"0000-0003-4757-117X\")),\n      person(given = \"RStudio\",\n             role = \"cph\"))",
-        "Description": "Manage the life cycle of your exported functions\n    with shared conventions, documentation badges, and user-friendly\n    deprecation warnings.",
+        "Version": "1.0.4",
+        "Authors@R": "c(\n    person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")),\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\",\n           comment = c(ORCID = \"0000-0003-4757-117X\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "Manage the life cycle of your exported functions with shared\n    conventions, documentation badges, and user-friendly deprecation\n    warnings.",
         "License": "MIT + file LICENSE",
         "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle",
         "BugReports": "https://github.com/r-lib/lifecycle/issues",
-        "Depends": "R (>= 3.3)",
-        "Imports": "glue, rlang (>= 0.4.10)",
-        "Suggests": "covr, crayon, lintr, tidyverse, knitr, rmarkdown, testthat\n(>= 3.0.1), tools, tibble, vctrs",
+        "Depends": "R (>= 3.6)",
+        "Imports": "cli (>= 3.4.0), glue, rlang (>= 1.1.0)",
+        "Suggests": "covr, crayon, knitr, lintr, rmarkdown, testthat (>= 3.0.1),\ntibble, tidyverse, tools, vctrs, withr",
         "VignetteBuilder": "knitr",
+        "Config/Needs/website": "tidyverse/tidytemplate, usethis",
         "Config/testthat/edition": "3",
         "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2",
+        "RoxygenNote": "7.2.1",
         "NeedsCompilation": "no",
-        "Packaged": "2021-09-24 14:46:50 UTC; lionel",
-        "Author": "Lionel Henry [aut, cre],\n  Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),\n  RStudio [cph]",
-        "Maintainer": "Lionel Henry <lionel@rstudio.com>",
+        "Packaged": "2023-11-06 16:07:36 UTC; lionel",
+        "Author": "Lionel Henry [aut, cre],\n  Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Lionel Henry <lionel@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-09-24 15:30:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-24 01:32:23 UTC; windows"
+        "Date/Publication": "2023-11-07 10:10:10 UTC",
+        "Built": "R 4.3.2; ; 2024-02-08 02:16:53 UTC; windows"
       }
     },
     "magrittr": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Type": "Package",
         "Package": "magrittr",
@@ -920,17 +909,41 @@
         "Maintainer": "Lionel Henry <lionel@rstudio.com>",
         "Repository": "CRAN",
         "Date/Publication": "2022-03-30 07:30:09 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:54 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:58 UTC; windows",
         "Archs": "x64"
       }
     },
+    "memoise": {
+      "Source": "CRAN",
+      "Repository": "https://cran.rstudio.com",
+      "description": {
+        "Package": "memoise",
+        "Title": "'Memoisation' of Functions",
+        "Version": "2.0.1",
+        "Authors@R": "\n    c(person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Jim\",\n             family = \"Hester\",\n             role = \"aut\"),\n      person(given = \"Winston\",\n             family = \"Chang\",\n             role = c(\"aut\", \"cre\"),\n             email = \"winston@rstudio.com\"),\n      person(given = \"Kirill\",\n             family = \"Müller\",\n             role = \"aut\",\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Daniel\",\n             family = \"Cook\",\n             role = \"aut\",\n             email = \"danielecook@gmail.com\"),\n      person(given = \"Mark\",\n             family = \"Edmondson\",\n             role = \"ctb\",\n             email = \"r@sunholo.com\"))",
+        "Description": "Cache the results of a function so that when you\n    call it again with the same arguments it returns the previously computed\n    value.",
+        "License": "MIT + file LICENSE",
+        "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise",
+        "BugReports": "https://github.com/r-lib/memoise/issues",
+        "Imports": "rlang (>= 0.4.10), cachem",
+        "Suggests": "digest, aws.s3, covr, googleAuthR, googleCloudStorageR, httr,\ntestthat",
+        "Encoding": "UTF-8",
+        "RoxygenNote": "7.1.2",
+        "NeedsCompilation": "no",
+        "Packaged": "2021-11-24 21:24:50 UTC; jhester",
+        "Author": "Hadley Wickham [aut],\n  Jim Hester [aut],\n  Winston Chang [aut, cre],\n  Kirill Müller [aut],\n  Daniel Cook [aut],\n  Mark Edmondson [ctb]",
+        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Repository": "CRAN",
+        "Date/Publication": "2021-11-26 16:11:10 UTC",
+        "Built": "R 4.3.2; ; 2024-02-15 02:44:58 UTC; windows"
+      }
+    },
     "mgcv": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "mgcv",
-        "Version": "1.8-40",
+        "Version": "1.9-0",
         "Author": "Simon Wood <simon.wood@r-project.org>",
         "Maintainer": "Simon Wood <simon.wood@r-project.org>",
         "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness\nEstimation",
@@ -943,17 +956,16 @@
         "ByteCompile": "yes",
         "License": "GPL (>= 2)",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-22 09:39:41 UTC; sw283",
+        "Packaged": "2023-07-07 06:01:32 UTC; sw283",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-29 09:50:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-06-23 02:26:06 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-07-11 08:40:18 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2023-10-31 14:13:26 UTC; windows",
         "Archs": "x64"
       }
     },
     "mime": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "mime",
         "Type": "Package",
@@ -973,19 +985,18 @@
         "Maintainer": "Yihui Xie <xie@yihui.name>",
         "Repository": "CRAN",
         "Date/Publication": "2021-09-28 05:00:05 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-04-24 01:19:40 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Built": "R 4.3.1; x86_64-w64-mingw32; 2023-10-20 00:51:12 UTC; windows",
         "Archs": "x64"
       }
     },
     "munsell": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "munsell",
         "Type": "Package",
         "Title": "Utilities for Using Munsell Colours",
-        "Version": "0.5.0",
+        "Version": "0.5.1",
         "Author": "Charlotte Wickham <cwickham@gmail.com>",
         "Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
         "Description": "Provides easy access to, and manipulation of, the Munsell \n    colours. Provides a mapping between Munsell's \n    original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable \n    for use directly in R graphics. Also provides utilities \n    to explore slices through the Munsell colour tree, to transform \n    Munsell colours and display colour palettes.",
@@ -993,17 +1004,19 @@
         "Imports": "colorspace, methods",
         "License": "MIT + file LICENSE",
         "URL": "https://cran.r-project.org/package=munsell,\nhttps://github.com/cwickham/munsell/",
-        "RoxygenNote": "6.0.1",
+        "RoxygenNote": "7.3.1",
+        "Encoding": "UTF-8",
+        "BugReports": "https://github.com/cwickham/munsell/issues",
         "NeedsCompilation": "no",
-        "Packaged": "2018-06-11 23:15:15 UTC; wickhamc",
+        "Packaged": "2024-04-01 20:42:09 UTC; charlottewickham",
         "Repository": "CRAN",
-        "Date/Publication": "2018-06-12 04:29:06 UTC",
-        "Built": "R 4.2.0; ; 2022-05-29 01:31:07 UTC; windows"
+        "Date/Publication": "2024-04-01 23:40:10 UTC",
+        "Built": "R 4.3.3; ; 2024-06-03 01:31:21 UTC; windows"
       }
     },
     "mvbutils": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "mvbutils",
         "Version": "2.8.232",
@@ -1020,16 +1033,16 @@
         "Packaged": "2018-12-12 11:36:05 UTC; bra381",
         "Repository": "CRAN",
         "Date/Publication": "2018-12-12 15:30:03 UTC",
-        "Built": "R 4.2.0; ; 2022-04-24 01:26:52 UTC; windows"
+        "Built": "R 4.3.1; ; 2023-10-20 01:01:33 UTC; windows"
       }
     },
     "nlme": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "nlme",
-        "Version": "3.1-157",
-        "Date": "2022-03-25",
+        "Version": "3.1-163",
+        "Date": "2023-07-31",
         "Priority": "recommended",
         "Title": "Linear and Nonlinear Mixed Effects Models",
         "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"),\n             person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"),\n             person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"),\n             person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"),\n             person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"),\n\t     person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"),\n             person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"),\n             person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"),\n\t     person(\"R Core Team\", email = \"R-core@R-project.org\",\n                    role = c(\"aut\", \"cre\")))",
@@ -1045,51 +1058,51 @@
         "MailingList": "R-help@r-project.org",
         "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-25 08:20:49 UTC; ripley",
+        "Packaged": "2023-08-02 07:04:32 UTC; maechler",
         "Author": "José Pinheiro [aut] (S version),\n  Douglas Bates [aut] (up to 2007),\n  Saikat DebRoy [ctb] (up to 2002),\n  Deepayan Sarkar [ctb] (up to 2005),\n  EISPACK authors [ctb] (src/rs.f),\n  Siem Heisterkamp [ctb] (Author fixed sigma),\n  Bert Van Willigen [ctb] (Programmer fixed sigma),\n  Johannes Ranke [ctb] (varConstProp()),\n  R Core Team [aut, cre]",
         "Maintainer": "R Core Team <R-core@R-project.org>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-25 16:25:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-06-23 01:51:43 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-08-09 11:20:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2023-10-31 14:10:05 UTC; windows",
         "Archs": "x64"
       }
     },
     "pillar": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "pillar",
         "Title": "Coloured Formatting for Columns",
-        "Version": "1.8.0",
-        "Authors@R": "\n    c(person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = c(\"aut\", \"cre\"),\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\"),\n      person(given = \"RStudio\",\n             role = \"cph\"))",
+        "Version": "1.9.0",
+        "Authors@R": "\n    c(person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = c(\"aut\", \"cre\"),\n             email = \"kirill@cynkra.com\",\n             comment = c(ORCID = \"0000-0002-1416-3412\")),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\"),\n      person(given = \"RStudio\",\n             role = \"cph\"))",
         "Description": "Provides 'pillar' and 'colonnade' generics designed\n    for formatting columns of data using the full range of colours\n    provided by modern terminals.",
         "License": "MIT + file LICENSE",
         "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar",
         "BugReports": "https://github.com/r-lib/pillar/issues",
-        "Imports": "cli (>= 2.3.0), fansi, glue, lifecycle, rlang (>= 1.0.2), utf8\n(>= 1.1.0), utils, vctrs (>= 0.3.8)",
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         "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2,\nformat_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2",
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         "Config/autostyle/strict": "true",
         "Config/gha/extra-packages": "DiagrammeR=?ignore-before-r=3.5.0",
+        "Config/Needs/website": "tidyverse/tidytemplate",
         "NeedsCompilation": "no",
-        "Packaged": "2022-07-09 04:42:15 UTC; kirill",
-        "Author": "Kirill Müller [aut, cre],\n  Hadley Wickham [aut],\n  RStudio [cph]",
-        "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
+        "Packaged": "2023-03-21 08:42:46 UTC; kirill",
+        "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),\n  Hadley Wickham [aut],\n  RStudio [cph]",
+        "Maintainer": "Kirill Müller <kirill@cynkra.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-07-18 08:50:06 UTC",
-        "Built": "R 4.2.1; ; 2022-07-26 02:26:23 UTC; windows"
+        "Date/Publication": "2023-03-22 08:10:02 UTC",
+        "Built": "R 4.3.2; ; 2024-02-08 03:03:40 UTC; windows"
       }
     },
     "pkgconfig": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "pkgconfig",
         "Title": "Private Configuration for 'R' Packages",
@@ -1108,44 +1121,43 @@
         "Packaged": "2019-09-22 08:42:40 UTC; gaborcsardi",
         "Repository": "CRAN",
         "Date/Publication": "2019-09-22 09:20:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-24 00:40:32 UTC; windows"
+        "Built": "R 4.3.2; ; 2024-02-08 01:36:59 UTC; windows"
       }
     },
     "promises": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
-        "Package": "promises",
         "Type": "Package",
+        "Package": "promises",
         "Title": "Abstractions for Promise-Based Asynchronous Programming",
-        "Version": "1.2.0.1",
-        "Authors@R": "c(\n      person(\"Joe\", \"Cheng\", email = \"joe@rstudio.com\", role = c(\"aut\", \"cre\")),\n      person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n    )",
-        "Description": "Provides fundamental abstractions for doing asynchronous programming\n    in R using promises. Asynchronous programming is useful for allowing a single\n    R process to orchestrate multiple tasks in the background while also attending\n    to something else. Semantics are similar to 'JavaScript' promises, but with a\n    syntax that is idiomatic R.",
+        "Version": "1.3.0",
+        "Authors@R": "c(\n    person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "Provides fundamental abstractions for doing asynchronous\n    programming in R using promises. Asynchronous programming is useful\n    for allowing a single R process to orchestrate multiple tasks in the\n    background while also attending to something else. Semantics are\n    similar to 'JavaScript' promises, but with a syntax that is idiomatic\n    R.",
         "License": "MIT + file LICENSE",
-        "Imports": "R6, Rcpp, later, rlang, stats, magrittr",
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         "URL": "https://rstudio.github.io/promises/,\nhttps://github.com/rstudio/promises",
         "BugReports": "https://github.com/rstudio/promises/issues",
+        "Imports": "fastmap (>= 1.1.0), later, magrittr (>= 1.5), R6, Rcpp, rlang,\nstats",
+        "Suggests": "future (>= 1.21.0), knitr, purrr, rmarkdown, spelling,\ntestthat, vembedr",
+        "LinkingTo": "later, Rcpp",
+        "VignetteBuilder": "knitr",
+        "Config/Needs/website": "rsconnect",
+        "Encoding": "UTF-8",
         "Language": "en-US",
+        "RoxygenNote": "7.3.1",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-02-11 18:18:47 UTC; barret",
-        "Author": "Joe Cheng [aut, cre],\n  RStudio [cph, fnd]",
-        "Maintainer": "Joe Cheng <joe@rstudio.com>",
+        "Packaged": "2024-04-04 20:02:05 UTC; jcheng",
+        "Author": "Joe Cheng [aut, cre],\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Joe Cheng <joe@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-02-11 19:00:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 02:06:13 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-04-05 15:00:06 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-19 01:33:35 UTC; windows",
         "Archs": "x64"
       }
     },
     "rappdirs": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Type": "Package",
         "Package": "rappdirs",
@@ -1168,52 +1180,49 @@
         "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
         "Repository": "CRAN",
         "Date/Publication": "2021-01-31 05:40:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:34 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
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         "Archs": "x64"
       }
     },
     "rlang": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "rlang",
-        "Version": "1.0.2",
+        "Version": "1.1.4",
         "Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
         "Description": "A toolbox for working with base types, core R features\n  like the condition system, and core 'Tidyverse' features like tidy\n  evaluation.",
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+        "Authors@R": "c(\n    person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")),\n    person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"),\n    person(given = \"mikefc\",\n           email = \"mikefc@coolbutuseless.com\", \n           role = \"cph\", \n           comment = \"Hash implementation based on Mike's xxhashlite\"),\n    person(given = \"Yann\",\n           family = \"Collet\",\n           role = \"cph\", \n           comment = \"Author of the embedded xxHash library\"),\n    person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\"))\n    )",
         "License": "MIT + file LICENSE",
         "ByteCompile": "true",
         "Biarch": "true",
-        "Depends": "R (>= 3.4.0)",
+        "Depends": "R (>= 3.5.0)",
         "Imports": "utils",
         "Suggests": "cli (>= 3.1.0), covr, crayon, fs, glue, knitr, magrittr,\nmethods, pillar, rmarkdown, stats, testthat (>= 3.0.0), tibble,\nusethis, vctrs (>= 0.2.3), withr",
         "Enhances": "winch",
-        "SystemRequirements": "C++11",
         "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2",
+        "RoxygenNote": "7.3.1",
         "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang",
         "BugReports": "https://github.com/r-lib/rlang/issues",
         "Config/testthat/edition": "3",
         "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
         "NeedsCompilation": "yes",
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-        "Author": "Lionel Henry [aut, cre],\n  Hadley Wickham [aut],\n  mikefc [cph] (Hash implementation based on Mike's xxhashlite),\n  Yann Collet [cph] (Author of the embedded xxHash library),\n  RStudio [cph, fnd]",
-        "Maintainer": "Lionel Henry <lionel@rstudio.com>",
+        "Packaged": "2024-05-31 12:46:04 UTC; lionel",
+        "Author": "Lionel Henry [aut, cre],\n  Hadley Wickham [aut],\n  mikefc [cph] (Hash implementation based on Mike's xxhashlite),\n  Yann Collet [cph] (Author of the embedded xxHash library),\n  Posit, PBC [cph, fnd]",
+        "Maintainer": "Lionel Henry <lionel@posit.co>",
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-        "Date/Publication": "2022-03-04 15:30:06 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:42:07 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-06-04 09:45:03 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-04 23:50:51 UTC; windows",
         "Archs": "x64"
       }
     },
     "sass": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Type": "Package",
         "Package": "sass",
-        "Version": "0.4.1",
+        "Version": "0.4.9",
         "Title": "Syntactically Awesome Style Sheets ('Sass')",
         "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this,\n    R developers can use variables, inheritance, and functions to generate\n    dynamic style sheets. The package uses the 'Sass CSS' extension language,\n    which is stable, powerful, and CSS compatible.",
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@@ -1221,168 +1230,150 @@
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         "BugReports": "https://github.com/rstudio/sass/issues",
         "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2",
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         "SystemRequirements": "GNU make",
-        "Imports": "fs, rlang (>= 0.4.10), htmltools (>= 0.5.1), R6, rappdirs",
+        "Imports": "fs (>= 1.2.4), rlang (>= 0.4.10), htmltools (>= 0.5.1), R6,\nrappdirs",
         "Suggests": "testthat, knitr, rmarkdown, withr, shiny, curl",
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         "Config/testthat/edition": "3",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-03-23 16:15:53 UTC; cpsievert",
+        "Packaged": "2024-03-15 21:58:01 UTC; cpsievert",
         "Author": "Joe Cheng [aut],\n  Timothy Mastny [aut],\n  Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),\n  Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),\n  Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),\n  Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),\n  RStudio [cph, fnd],\n  Sass Open Source Foundation [ctb, cph] (LibSass library),\n  Greter Marcel [ctb, cph] (LibSass library),\n  Mifsud Michael [ctb, cph] (LibSass library),\n  Hampton Catlin [ctb, cph] (LibSass library),\n  Natalie Weizenbaum [ctb, cph] (LibSass library),\n  Chris Eppstein [ctb, cph] (LibSass library),\n  Adams Joseph [ctb, cph] (json.cpp),\n  Trifunovic Nemanja [ctb, cph] (utf8.h)",
         "Maintainer": "Carson Sievert <carson@rstudio.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-23 17:10:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-29 02:07:04 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2024-03-15 22:30:02 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-06-03 01:51:23 UTC; windows",
         "Archs": "x64"
       }
     },
     "scales": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "scales",
         "Title": "Scale Functions for Visualization",
-        "Version": "1.2.0",
-        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")),\n    person(\"Dana\", \"Seidel\", role = \"aut\"),\n    person(\"RStudio\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Version": "1.3.0",
+        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")),\n    person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"),\n           comment = c(ORCID = \"0000-0002-5147-4711\")),\n    person(\"Dana\", \"Seidel\", role = \"aut\"),\n    person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
         "Description": "Graphical scales map data to aesthetics, and provide methods\n    for automatically determining breaks and labels for axes and legends.",
         "License": "MIT + file LICENSE",
         "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
         "BugReports": "https://github.com/r-lib/scales/issues",
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-        "Suggests": "bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,\ntestthat (>= 3.0.0), waldo (>= 0.4.0)",
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+        "Imports": "cli, farver (>= 2.0.3), glue, labeling, lifecycle, munsell (>=\n0.5), R6, RColorBrewer, rlang (>= 1.0.0), viridisLite",
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         "Config/Needs/website": "tidyverse/tidytemplate",
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         "Encoding": "UTF-8",
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-        "Author": "Hadley Wickham [aut, cre],\n  Dana Seidel [aut],\n  RStudio [cph, fnd]",
-        "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
+        "RoxygenNote": "7.2.3",
+        "NeedsCompilation": "yes",
+        "Packaged": "2023-11-27 20:27:59 UTC; thomas",
+        "Author": "Hadley Wickham [aut],\n  Thomas Lin Pedersen [cre, aut]\n    (<https://orcid.org/0000-0002-5147-4711>),\n  Dana Seidel [aut],\n  Posit, PBC [cph, fnd]",
+        "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-04-13 22:40:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-29 02:05:53 UTC; windows"
+        "Date/Publication": "2023-11-28 09:10:06 UTC",
+        "Built": "R 4.3.2; ; 2024-02-11 02:45:48 UTC; windows"
       }
     },
     "shiny": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "shiny",
         "Type": "Package",
         "Title": "Web Application Framework for R",
-        "Version": "1.7.1",
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+        "Authors@R": "c(\n    person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")),\n    person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"),\n    person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"),\n    person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")),\n    person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")),\n    person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"),\n    person(\"Jeff\", \"Allen\", role = \"aut\"),\n    person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"),\n    person(\"Alan\", \"Dipert\", role = \"aut\"),\n    person(\"Barbara\", \"Borges\", role = \"aut\"),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")),\n    person(family = \"jQuery Foundation\", role = \"cph\",\n    comment = \"jQuery library and jQuery UI library\"),\n    person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"),\n    comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"),\n    person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"),\n    comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"),\n    person(\"Mark\", \"Otto\", role = \"ctb\",\n    comment = \"Bootstrap library\"),\n    person(\"Jacob\", \"Thornton\", role = \"ctb\",\n    comment = \"Bootstrap library\"),\n    person(family = \"Bootstrap contributors\", role = \"ctb\",\n    comment = \"Bootstrap library\"),\n    person(family = \"Twitter, Inc\", role = \"cph\",\n    comment = \"Bootstrap library\"),\n    person(\"Prem Nawaz\", \"Khan\", role = \"ctb\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(\"Victor\", \"Tsaran\", role = \"ctb\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(\"Dennis\", \"Lembree\", role = \"ctb\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(\"Cathy\", \"O'Connor\", role = \"ctb\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(family = \"PayPal, Inc\", role = \"cph\",\n    comment = \"Bootstrap accessibility plugin\"),\n    person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"),\n    comment = \"Bootstrap-datepicker library\"),\n    person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"),\n    comment = \"Bootstrap-datepicker library\"),\n    person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"),\n    comment = \"selectize.js library\"),\n    person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"),\n    comment = \"selectize-plugin-a11y library\"),\n    person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"),\n    comment = \"ion.rangeSlider library\"),\n    person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"),\n    comment = \"Javascript strftime library\"),\n    person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"),\n    comment = \"DataTables library\"),\n    person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"),\n    comment = \"showdown.js library\"),\n    person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"),\n    comment = \"showdown.js library\"),\n    person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"),\n    comment = \"highlight.js library\"),\n    person(family = \"R Core Team\", role = c(\"ctb\", \"cph\"),\n    comment = \"tar implementation from R\")\n    )",
         "Description": "Makes it incredibly easy to build interactive web\n    applications with R. Automatic \"reactive\" binding between inputs and\n    outputs and extensive prebuilt widgets make it possible to build\n    beautiful, responsive, and powerful applications with minimal effort.",
         "License": "GPL-3 | file LICENSE",
         "Depends": "R (>= 3.0.2), methods",
-        "Imports": "utils, grDevices, httpuv (>= 1.5.2), mime (>= 0.3), jsonlite\n(>= 0.9.16), xtable, fontawesome (>= 0.2.1), htmltools (>=\n0.5.2), R6 (>= 2.0), sourcetools, later (>= 1.0.0), promises\n(>= 1.1.0), tools, crayon, rlang (>= 0.4.10), fastmap (>=\n1.1.0), withr, commonmark (>= 1.7), glue (>= 1.3.2), bslib (>=\n0.3.0), cachem, ellipsis, lifecycle (>= 0.2.0)",
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-        "URL": "https://shiny.rstudio.com/",
+        "Imports": "utils, grDevices, httpuv (>= 1.5.2), mime (>= 0.3), jsonlite\n(>= 0.9.16), xtable, fontawesome (>= 0.4.0), htmltools (>=\n0.5.4), R6 (>= 2.0), sourcetools, later (>= 1.0.0), promises\n(>= 1.1.0), tools, crayon, rlang (>= 0.4.10), fastmap (>=\n1.1.1), withr, commonmark (>= 1.7), glue (>= 1.3.2), bslib (>=\n0.3.0), cachem, ellipsis, lifecycle (>= 0.2.0)",
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+        "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny",
         "BugReports": "https://github.com/rstudio/shiny/issues",
-        "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R'\n'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R'\n'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R'\n'map.R' 'utils.R' 'bootstrap.R' 'cache-utils.R' 'deprecated.R'\n'devmode.R' 'diagnose.R' 'fileupload.R' 'graph.R' 'reactives.R'\n'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R'\n'image-interact-opts.R' 'image-interact.R' 'imageutils.R'\n'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R'\n'input-date.R' 'input-daterange.R' 'input-file.R'\n'input-numeric.R' 'input-password.R' 'input-radiobuttons.R'\n'input-select.R' 'input-slider.R' 'input-submit.R'\n'input-text.R' 'input-textarea.R' 'input-utils.R'\n'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R'\n'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R'\n'mock-session.R' 'modal.R' 'modules.R' 'notifications.R'\n'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R'\n'render-cached-plot.R' 'render-plot.R' 'render-table.R'\n'run-url.R' 'runapp.R' 'serializers.R'\n'server-input-handlers.R' 'server-resource-paths.R' 'server.R'\n'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R'\n'shinywrappers.R' 'showcase.R' 'snapshot.R' 'tar.R'\n'test-export.R' 'test-server.R' 'test.R' 'update-input.R'\n'utils-lang.R' 'version_bs_date_picker.R'\n'version_ion_range_slider.R' 'version_jquery.R'\n'version_selectize.R' 'version_strftime.R' 'viewer.R'",
-        "RoxygenNote": "7.1.2",
+        "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R'\n'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R'\n'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R'\n'map.R' 'utils.R' 'bootstrap.R' 'cache-utils.R' 'deprecated.R'\n'devmode.R' 'diagnose.R' 'fileupload.R' 'graph.R' 'reactives.R'\n'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R'\n'image-interact-opts.R' 'image-interact.R' 'imageutils.R'\n'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R'\n'input-date.R' 'input-daterange.R' 'input-file.R'\n'input-numeric.R' 'input-password.R' 'input-radiobuttons.R'\n'input-select.R' 'input-slider.R' 'input-submit.R'\n'input-text.R' 'input-textarea.R' 'input-utils.R'\n'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R'\n'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R'\n'mock-session.R' 'modal.R' 'modules.R' 'notifications.R'\n'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R'\n'render-cached-plot.R' 'render-plot.R' 'render-table.R'\n'run-url.R' 'runapp.R' 'serializers.R'\n'server-input-handlers.R' 'server-resource-paths.R' 'server.R'\n'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R'\n'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R'\n'tar.R' 'test-export.R' 'test-server.R' 'test.R'\n'update-input.R' 'utils-lang.R' 'version_bs_date_picker.R'\n'version_ion_range_slider.R' 'version_jquery.R'\n'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R'\n'viewer.R'",
+        "RoxygenNote": "7.2.3",
         "Encoding": "UTF-8",
         "RdMacros": "lifecycle",
         "Config/testthat/edition": "3",
+        "Config/Needs/check": "shinytest2",
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-        "Packaged": "2021-10-01 21:41:01 UTC; winston",
-        "Author": "Winston Chang [aut, cre] (<https://orcid.org/0000-0002-1576-2126>),\n  Joe Cheng [aut],\n  JJ Allaire [aut],\n  Carson Sievert [aut] (<https://orcid.org/0000-0002-4958-2844>),\n  Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),\n  Yihui Xie [aut],\n  Jeff Allen [aut],\n  Jonathan McPherson [aut],\n  Alan Dipert [aut],\n  Barbara Borges [aut],\n  RStudio [cph],\n  jQuery Foundation [cph] (jQuery library and jQuery UI library),\n  jQuery contributors [ctb, cph] (jQuery library; authors listed in\n    inst/www/shared/jquery-AUTHORS.txt),\n  jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in\n    inst/www/shared/jqueryui/AUTHORS.txt),\n  Mark Otto [ctb] (Bootstrap library),\n  Jacob Thornton [ctb] (Bootstrap library),\n  Bootstrap contributors [ctb] (Bootstrap library),\n  Twitter, Inc [cph] (Bootstrap library),\n  Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin),\n  Victor Tsaran [ctb] (Bootstrap accessibility plugin),\n  Dennis Lembree [ctb] (Bootstrap accessibility plugin),\n  Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin),\n  Cathy O'Connor [ctb] (Bootstrap accessibility plugin),\n  PayPal, Inc [cph] (Bootstrap accessibility plugin),\n  Stefan Petre [ctb, cph] (Bootstrap-datepicker library),\n  Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),\n  Brian Reavis [ctb, cph] (selectize.js library),\n  Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library),\n  Denis Ineshin [ctb, cph] (ion.rangeSlider library),\n  Sami Samhuri [ctb, cph] (Javascript strftime library),\n  SpryMedia Limited [ctb, cph] (DataTables library),\n  John Fraser [ctb, cph] (showdown.js library),\n  John Gruber [ctb, cph] (showdown.js library),\n  Ivan Sagalaev [ctb, cph] (highlight.js library),\n  R Core Team [ctb, cph] (tar implementation from R)",
-        "Maintainer": "Winston Chang <winston@rstudio.com>",
+        "Packaged": "2023-11-17 16:44:52 UTC; cpsievert",
+        "Author": "Winston Chang [aut, cre] (<https://orcid.org/0000-0002-1576-2126>),\n  Joe Cheng [aut],\n  JJ Allaire [aut],\n  Carson Sievert [aut] (<https://orcid.org/0000-0002-4958-2844>),\n  Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),\n  Yihui Xie [aut],\n  Jeff Allen [aut],\n  Jonathan McPherson [aut],\n  Alan Dipert [aut],\n  Barbara Borges [aut],\n  Posit Software, PBC [cph, fnd],\n  jQuery Foundation [cph] (jQuery library and jQuery UI library),\n  jQuery contributors [ctb, cph] (jQuery library; authors listed in\n    inst/www/shared/jquery-AUTHORS.txt),\n  jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in\n    inst/www/shared/jqueryui/AUTHORS.txt),\n  Mark Otto [ctb] (Bootstrap library),\n  Jacob Thornton [ctb] (Bootstrap library),\n  Bootstrap contributors [ctb] (Bootstrap library),\n  Twitter, Inc [cph] (Bootstrap library),\n  Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin),\n  Victor Tsaran [ctb] (Bootstrap accessibility plugin),\n  Dennis Lembree [ctb] (Bootstrap accessibility plugin),\n  Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin),\n  Cathy O'Connor [ctb] (Bootstrap accessibility plugin),\n  PayPal, Inc [cph] (Bootstrap accessibility plugin),\n  Stefan Petre [ctb, cph] (Bootstrap-datepicker library),\n  Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),\n  Brian Reavis [ctb, cph] (selectize.js library),\n  Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library),\n  Denis Ineshin [ctb, cph] (ion.rangeSlider library),\n  Sami Samhuri [ctb, cph] (Javascript strftime library),\n  SpryMedia Limited [ctb, cph] (DataTables library),\n  John Fraser [ctb, cph] (showdown.js library),\n  John Gruber [ctb, cph] (showdown.js library),\n  Ivan Sagalaev [ctb, cph] (highlight.js library),\n  R Core Team [ctb, cph] (tar implementation from R)",
+        "Maintainer": "Winston Chang <winston@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-10-02 04:30:02 UTC",
-        "Built": "R 4.2.0; ; 2022-06-21 03:05:08 UTC; windows"
+        "Date/Publication": "2023-11-17 23:40:02 UTC",
+        "Built": "R 4.3.3; ; 2024-03-14 03:38:43 UTC; windows"
       }
     },
     "sourcetools": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "sourcetools",
         "Type": "Package",
         "Title": "Tools for Reading, Tokenizing and Parsing R Code",
-        "Version": "0.1.7",
+        "Version": "0.1.7-1",
         "Author": "Kevin Ushey",
         "Maintainer": "Kevin Ushey <kevinushey@gmail.com>",
         "Description": "Tools for the reading and tokenization of R code. The\n    'sourcetools' package provides both an R and C++ interface for the tokenization\n    of R code, and helpers for interacting with the tokenized representation of R\n    code.",
         "License": "MIT + file LICENSE",
-        "LazyData": "TRUE",
         "Depends": "R (>= 3.0.2)",
         "Suggests": "testthat",
         "RoxygenNote": "5.0.1",
         "BugReports": "https://github.com/kevinushey/sourcetools/issues",
         "Encoding": "UTF-8",
         "NeedsCompilation": "yes",
-        "Packaged": "2018-04-25 03:19:22 UTC; kevin",
+        "Packaged": "2023-01-31 18:03:04 UTC; kevin",
         "Repository": "CRAN",
-        "Date/Publication": "2018-04-25 03:38:09 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-06-21 00:33:42 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-02-01 10:10:02 UTC",
+        "Built": "R 4.3.3; x86_64-w64-mingw32; 2024-03-14 01:57:46 UTC; windows",
         "Archs": "x64"
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-      "Repository": null,
-      "description": {
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-        "Title": "What the Package Does (One Line, Title Case)",
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-        "Authors@R": "person(\"First\", \"Last\", , \"first.last@example.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"YOUR-ORCID-ID\"))",
-        "Description": "What the package does (one paragraph).",
-        "License": "`use_mit_license()`, `use_gpl3_license()` or friends to pick a\nlicense",
-        "Encoding": "UTF-8",
-        "Roxygen": "list(markdown = TRUE)",
-        "RoxygenNote": "7.2.0.9000",
-        "Imports": "mvbutils"
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       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "tibble",
         "Title": "Simple Data Frames",
-        "Version": "3.1.7",
-        "Authors@R": "\n    c(person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = c(\"aut\", \"cre\"),\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Romain\",\n             family = \"Francois\",\n             role = \"ctb\",\n             email = \"romain@r-enthusiasts.com\"),\n      person(given = \"Jennifer\",\n             family = \"Bryan\",\n             role = \"ctb\",\n             email = \"jenny@rstudio.com\"),\n      person(given = \"RStudio\",\n             role = c(\"cph\", \"fnd\")))",
+        "Version": "3.2.1",
+        "Authors@R": "\n    c(person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = c(\"aut\", \"cre\"),\n             email = \"kirill@cynkra.com\",\n             comment = c(ORCID = \"0000-0002-1416-3412\")),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Romain\",\n             family = \"Francois\",\n             role = \"ctb\",\n             email = \"romain@r-enthusiasts.com\"),\n      person(given = \"Jennifer\",\n             family = \"Bryan\",\n             role = \"ctb\",\n             email = \"jenny@rstudio.com\"),\n      person(given = \"RStudio\",\n             role = c(\"cph\", \"fnd\")))",
         "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional\n    data frame.",
         "License": "MIT + file LICENSE",
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         "Config/testthat/edition": "3",
         "Config/testthat/parallel": "true",
-        "Config/testthat/start-first": "subsetting, as_tibble, add, invariants",
+        "Config/testthat/start-first": "vignette-formats, as_tibble, add,\ninvariants",
         "Config/autostyle/scope": "line_breaks",
         "Config/autostyle/strict": "true",
+        "Config/autostyle/rmd": "false",
         "Config/Needs/website": "tidyverse/tidytemplate",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-04-26 14:15:54 UTC; kirill",
-        "Author": "Kirill Müller [aut, cre],\n  Hadley Wickham [aut],\n  Romain Francois [ctb],\n  Jennifer Bryan [ctb],\n  RStudio [cph, fnd]",
-        "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
+        "Packaged": "2023-03-19 09:23:10 UTC; kirill",
+        "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),\n  Hadley Wickham [aut],\n  Romain Francois [ctb],\n  Jennifer Bryan [ctb],\n  RStudio [cph, fnd]",
+        "Maintainer": "Kirill Müller <kirill@cynkra.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-05-03 07:00:06 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 03:16:28 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-03-20 06:30:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-04 03:33:44 UTC; windows",
         "Archs": "x64"
       }
     },
     "utf8": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "utf8",
         "Title": "Unicode Text Processing",
-        "Version": "1.2.2",
-        "Authors@R": "\n    c(person(given = c(\"Patrick\", \"O.\"),\n             family = \"Perry\",\n             role = c(\"aut\", \"cph\")),\n      person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = \"cre\",\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Unicode, Inc.\",\n             role = c(\"cph\", \"dtc\"),\n             comment = \"Unicode Character Database\"))",
+        "Version": "1.2.4",
+        "Authors@R": "\n    c(person(given = c(\"Patrick\", \"O.\"),\n             family = \"Perry\",\n             role = c(\"aut\", \"cph\")),\n      person(given = \"Kirill\",\n             family = \"M\\u00fcller\",\n             role = \"cre\",\n             email = \"kirill@cynkra.com\"),\n      person(given = \"Unicode, Inc.\",\n             role = c(\"cph\", \"dtc\"),\n             comment = \"Unicode Character Database\"))",
         "Description": "Process and print 'UTF-8' encoded international\n    text (Unicode). Input, validate, normalize, encode, format, and\n    display.",
         "License": "Apache License (== 2.0) | file LICENSE",
         "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8",
@@ -1392,58 +1383,57 @@
         "VignetteBuilder": "knitr, rmarkdown",
         "Config/testthat/edition": "3",
         "Encoding": "UTF-8",
+        "RoxygenNote": "7.2.3",
         "NeedsCompilation": "yes",
-        "Packaged": "2021-07-24 08:19:25 UTC; kirill",
+        "Packaged": "2023-10-22 13:43:19 UTC; kirill",
         "Author": "Patrick O. Perry [aut, cph],\n  Kirill Müller [cre],\n  Unicode, Inc. [cph, dtc] (Unicode Character Database)",
-        "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
+        "Maintainer": "Kirill Müller <kirill@cynkra.com>",
         "Repository": "CRAN",
-        "Date/Publication": "2021-07-24 15:00:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 00:40:55 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-10-22 21:50:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 01:36:58 UTC; windows",
         "Archs": "x64"
       }
     },
     "vctrs": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "vctrs",
         "Title": "Vector Helpers",
-        "Version": "0.4.1",
-        "Authors@R": "\n    c(person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Lionel\",\n             family = \"Henry\",\n             role = c(\"aut\", \"cre\"),\n             email = \"lionel@rstudio.com\"),\n      person(given = \"Davis\",\n             family = \"Vaughan\",\n             role = \"aut\",\n             email = \"davis@rstudio.com\"),\n      person(given = \"data.table team\",\n             role = \"cph\",\n             comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"),\n      person(given = \"RStudio\",\n             role = \"cph\"))",
-        "Description": "Defines new notions of prototype and size that are\n    used to provide tools for consistent and well-founded type-coercion\n    and size-recycling, and are in turn connected to ideas of type- and\n    size-stability useful for analysing function interfaces.",
+        "Version": "0.6.5",
+        "Authors@R": "c(\n    person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"),\n    person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"),\n    person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")),\n    person(\"data.table team\", role = \"cph\",\n           comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"),\n    person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n  )",
+        "Description": "Defines new notions of prototype and size that are used to\n    provide tools for consistent and well-founded type-coercion and\n    size-recycling, and are in turn connected to ideas of type- and\n    size-stability useful for analysing function interfaces.",
         "License": "MIT + file LICENSE",
-        "URL": "https://vctrs.r-lib.org/",
+        "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs",
         "BugReports": "https://github.com/r-lib/vctrs/issues",
-        "Depends": "R (>= 3.3)",
-        "Imports": "cli (>= 3.2.0), glue, rlang (>= 1.0.2)",
-        "Suggests": "bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,\npillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=\n3.0.0), tibble (>= 3.1.3), withr, xml2, waldo (>= 0.2.0),\nzeallot",
+        "Depends": "R (>= 3.5.0)",
+        "Imports": "cli (>= 3.4.0), glue, lifecycle (>= 1.0.3), rlang (>= 1.1.0)",
+        "Suggests": "bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,\npillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=\n3.0.0), tibble (>= 3.1.3), waldo (>= 0.2.0), withr, xml2,\nzeallot",
         "VignetteBuilder": "knitr",
-        "SystemRequirements": "C++11",
+        "Config/Needs/website": "tidyverse/tidytemplate",
+        "Config/testthat/edition": "3",
         "Encoding": "UTF-8",
         "Language": "en-GB",
-        "RoxygenNote": "7.1.2",
-        "Config/testthat/edition": "3",
-        "Config/Needs/website": "tidyverse/tidytemplate",
+        "RoxygenNote": "7.2.3",
         "NeedsCompilation": "yes",
-        "Packaged": "2022-04-13 08:56:33 UTC; lionel",
-        "Author": "Hadley Wickham [aut],\n  Lionel Henry [aut, cre],\n  Davis Vaughan [aut],\n  data.table team [cph] (Radix sort based on data.table's forder() and\n    their contribution to R's order()),\n  RStudio [cph]",
-        "Maintainer": "Lionel Henry <lionel@rstudio.com>",
+        "Packaged": "2023-12-01 16:27:12 UTC; davis",
+        "Author": "Hadley Wickham [aut],\n  Lionel Henry [aut],\n  Davis Vaughan [aut, cre],\n  data.table team [cph] (Radix sort based on data.table's forder() and\n    their contribution to R's order()),\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Davis Vaughan <davis@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-04-13 10:30:02 UTC",
-        "Built": "R 4.2.0; x86_64-w64-mingw32; 2022-05-24 02:10:09 UTC; windows",
-        "ExperimentalWindowsRuntime": "ucrt",
+        "Date/Publication": "2023-12-01 23:50:02 UTC",
+        "Built": "R 4.3.2; x86_64-w64-mingw32; 2024-02-08 02:42:55 UTC; windows",
         "Archs": "x64"
       }
     },
     "viridisLite": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "viridisLite",
         "Type": "Package",
         "Title": "Colorblind-Friendly Color Maps (Lite Version)",
-        "Version": "0.4.0",
+        "Version": "0.4.2",
+        "Date": "2023-05-02",
         "Authors@R": "c(\n      person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")),\n      person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")),\n      person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")),\n      person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")),\n      person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")),\n      person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\"))\n  )",
         "Maintainer": "Simon Garnier <garnier@njit.edu>",
         "Description": "Color maps designed to improve graph readability for readers with \n    common forms of color blindness and/or color vision deficiency. The color \n    maps are also perceptually-uniform, both in regular form and also when \n    converted to black-and-white for printing. This is the 'lite' version of the \n    'viridis' package that also contains 'ggplot2' bindings for discrete and \n    continuous color and fill scales and can be found at \n    <https://cran.r-project.org/package=viridis>.",
@@ -1453,48 +1443,48 @@
         "Suggests": "hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr",
         "URL": "https://sjmgarnier.github.io/viridisLite/,\nhttps://github.com/sjmgarnier/viridisLite/",
         "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/",
-        "RoxygenNote": "7.1.1",
+        "RoxygenNote": "7.2.3",
         "NeedsCompilation": "no",
-        "Packaged": "2021-04-11 18:02:57 UTC; simon",
+        "Packaged": "2023-05-02 21:38:46 UTC; simon",
         "Author": "Simon Garnier [aut, cre],\n  Noam Ross [ctb, cph],\n  Bob Rudis [ctb, cph],\n  Marco Sciaini [ctb, cph],\n  Antônio Pedro Camargo [ctb, cph],\n  Cédric Scherer [ctb, cph]",
         "Repository": "CRAN",
-        "Date/Publication": "2021-04-13 15:00:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-29 00:39:47 UTC; windows"
+        "Date/Publication": "2023-05-02 23:50:02 UTC",
+        "Built": "R 4.3.2; ; 2024-02-11 01:42:56 UTC; windows"
       }
     },
     "withr": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "withr",
         "Title": "Run Code 'With' Temporarily Modified Global State",
-        "Version": "2.5.0",
-        "Authors@R": "\n    c(person(given = \"Jim\",\n             family = \"Hester\",\n             role = \"aut\"),\n      person(given = \"Lionel\",\n             family = \"Henry\",\n             role = c(\"aut\", \"cre\"),\n             email = \"lionel@rstudio.com\"),\n      person(given = \"Kirill\",\n             family = \"Müller\",\n             role = \"aut\",\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Kevin\",\n             family = \"Ushey\",\n             role = \"aut\",\n             email = \"kevinushey@gmail.com\"),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@rstudio.com\"),\n      person(given = \"Winston\",\n             family = \"Chang\",\n             role = \"aut\"),\n      person(given = \"Jennifer\",\n             family = \"Bryan\",\n             role = \"ctb\"),\n      person(given = \"Richard\",\n             family = \"Cotton\",\n             role = \"ctb\"),\n      person(given = \"RStudio\",\n             role = c(\"cph\", \"fnd\")))",
+        "Version": "3.0.0",
+        "Authors@R": "\n    c(person(given = \"Jim\",\n             family = \"Hester\",\n             role = \"aut\"),\n      person(given = \"Lionel\",\n             family = \"Henry\",\n             role = c(\"aut\", \"cre\"),\n             email = \"lionel@posit.co\"),\n      person(given = \"Kirill\",\n             family = \"Müller\",\n             role = \"aut\",\n             email = \"krlmlr+r@mailbox.org\"),\n      person(given = \"Kevin\",\n             family = \"Ushey\",\n             role = \"aut\",\n             email = \"kevinushey@gmail.com\"),\n      person(given = \"Hadley\",\n             family = \"Wickham\",\n             role = \"aut\",\n             email = \"hadley@posit.co\"),\n      person(given = \"Winston\",\n             family = \"Chang\",\n             role = \"aut\"),\n      person(given = \"Jennifer\",\n             family = \"Bryan\",\n             role = \"ctb\"),\n      person(given = \"Richard\",\n             family = \"Cotton\",\n             role = \"ctb\"),\n      person(given = \"Posit Software, PBC\",\n             role = c(\"cph\", \"fnd\")))",
         "Description": "A set of functions to run code 'with' safely and\n    temporarily modified global state. Many of these functions were\n    originally a part of the 'devtools' package, this provides a simple\n    package with limited dependencies to provide access to these\n    functions.",
         "License": "MIT + file LICENSE",
         "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme",
         "BugReports": "https://github.com/r-lib/withr/issues",
-        "Depends": "R (>= 3.2.0)",
-        "Imports": "graphics, grDevices, stats",
+        "Depends": "R (>= 3.5.0)",
+        "Imports": "graphics, grDevices,",
         "Suggests": "callr, covr, DBI, knitr, lattice, methods, rlang, rmarkdown\n(>= 2.12), RSQLite, testthat (>= 3.0.0)",
         "VignetteBuilder": "knitr",
         "Encoding": "UTF-8",
-        "RoxygenNote": "7.1.2",
-        "Collate": "'aaa.R' 'collate.R' 'compat-defer.R' 'connection.R' 'db.R'\n'defer.R' 'wrap.R' 'local_.R' 'with_.R' 'devices.R' 'dir.R'\n'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R'\n'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R'\n'seed.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R'\n'utils.R' 'with.R'",
+        "RoxygenNote": "7.3.0.9000",
+        "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R'\n'standalone-defer.R' 'defer.R' 'wrap.R' 'local_.R' 'with_.R'\n'devices.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R'\n'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R'\n'path.R' 'rng.R' 'seed.R' 'sink.R' 'tempfile.R' 'timezone.R'\n'torture.R' 'utils.R' 'with.R'",
         "Config/testthat/edition": "3",
         "Config/Needs/website": "tidyverse/tidytemplate",
         "NeedsCompilation": "no",
-        "Packaged": "2022-03-03 21:13:01 UTC; lionel",
-        "Author": "Jim Hester [aut],\n  Lionel Henry [aut, cre],\n  Kirill Müller [aut],\n  Kevin Ushey [aut],\n  Hadley Wickham [aut],\n  Winston Chang [aut],\n  Jennifer Bryan [ctb],\n  Richard Cotton [ctb],\n  RStudio [cph, fnd]",
-        "Maintainer": "Lionel Henry <lionel@rstudio.com>",
+        "Packaged": "2024-01-16 10:22:29 UTC; lionel",
+        "Author": "Jim Hester [aut],\n  Lionel Henry [aut, cre],\n  Kirill Müller [aut],\n  Kevin Ushey [aut],\n  Hadley Wickham [aut],\n  Winston Chang [aut],\n  Jennifer Bryan [ctb],\n  Richard Cotton [ctb],\n  Posit Software, PBC [cph, fnd]",
+        "Maintainer": "Lionel Henry <lionel@posit.co>",
         "Repository": "CRAN",
-        "Date/Publication": "2022-03-03 21:50:02 UTC",
-        "Built": "R 4.2.0; ; 2022-05-24 00:40:55 UTC; windows"
+        "Date/Publication": "2024-01-16 14:20:02 UTC",
+        "Built": "R 4.3.2; ; 2024-02-08 01:36:59 UTC; windows"
       }
     },
     "xtable": {
       "Source": "CRAN",
-      "Repository": "https://cran.rstudio.com/",
+      "Repository": "https://cran.rstudio.com",
       "description": {
         "Package": "xtable",
         "Version": "1.8-4",
@@ -1514,19 +1504,22 @@
         "Packaged": "2019-04-21 10:56:51 UTC; dsco036",
         "Author": "David B. Dahl [aut],\n  David Scott [aut, cre],\n  Charles Roosen [aut],\n  Arni Magnusson [aut],\n  Jonathan Swinton [aut],\n  Ajay Shah [ctb],\n  Arne Henningsen [ctb],\n  Benno Puetz [ctb],\n  Bernhard Pfaff [ctb],\n  Claudio Agostinelli [ctb],\n  Claudius Loehnert [ctb],\n  David Mitchell [ctb],\n  David Whiting [ctb],\n  Fernando da Rosa [ctb],\n  Guido Gay [ctb],\n  Guido Schulz [ctb],\n  Ian Fellows [ctb],\n  Jeff Laake [ctb],\n  John Walker [ctb],\n  Jun Yan [ctb],\n  Liviu Andronic [ctb],\n  Markus Loecher [ctb],\n  Martin Gubri [ctb],\n  Matthieu Stigler [ctb],\n  Robert Castelo [ctb],\n  Seth Falcon [ctb],\n  Stefan Edwards [ctb],\n  Sven Garbade [ctb],\n  Uwe Ligges [ctb]",
         "Date/Publication": "2019-04-21 12:20:03 UTC",
-        "Built": "R 4.2.0; ; 2022-06-21 00:33:08 UTC; windows"
+        "Built": "R 4.3.3; ; 2024-03-14 01:57:45 UTC; windows"
       }
     }
   },
   "files": {
+    "extra.css": {
+      "checksum": "3b50a812dac2e6d63d866e600fc10017"
+    },
     "nmfs-styles.css": {
       "checksum": "383b12076ec170bebc6e91c557a3fcf3"
     },
     "server.r": {
-      "checksum": "948e81258478a072e5dbe11655a6df8c"
+      "checksum": "ba586e66188b16ab56425ab5086f081d"
     },
     "ui.r": {
-      "checksum": "5f34fc56336523438ea03a54df840f4d"
+      "checksum": "f25b27067d8b1a00f13e38aeb8187cf7"
     }
   },
   "users": null
diff --git a/inst/Shiny/server.r b/inst/Shiny/server.r
index fae9dec..b3241cb 100644
--- a/inst/Shiny/server.r
+++ b/inst/Shiny/server.r
@@ -1,7 +1,7 @@
 # Define server logic required to draw a histogram ----
 server <- function(input, output, session) {
   require(jsonlite)
-  library(stockassessmentdictionary)
+  library(fishdictionary)
   require(ggplot2)
   require(shiny)
 
@@ -10,7 +10,7 @@ server <- function(input, output, session) {
     unlink(tmp) })
 
   rd_database <- reactive({
-    tools::Rd_db(package = "stockassessmentdictionary")
+    tools::Rd_db(package = "fishdictionary")
   })
 
   output$choose_topic <- renderUI({
@@ -22,11 +22,11 @@ server <- function(input, output, session) {
     rdfile <- paste0(input$Term, ".Rd")
     req(rdfile %in% names(rd_database()))
     tools::Rd2HTML(rd_database()[[rdfile]], tmp,
-    package = "stockassessmentdictionary")
+    package = "fishdictionary")
     htmltools::includeHTML(tmp)})
 
   output$foodweb <- renderPlot({
-    mvbutils::foodweb(where = "package:stockassessmentdictionary",
+    mvbutils::foodweb(where = "package:fishdictionary",
      prune = input$Term)
   })
 }
\ No newline at end of file
diff --git a/inst/Shiny/ui.r b/inst/Shiny/ui.r
index 68a68e5..19a6827 100644
--- a/inst/Shiny/ui.r
+++ b/inst/Shiny/ui.r
@@ -1,5 +1,5 @@
 require(shiny)
-require(stockassessmentdictionary)
+require(fishdictionary)
 ui <- fluidPage(
   # includeCSS("extra.css"),
   includeCSS("nmfs-styles.css"),
diff --git a/inst/extdata/testthat_data/validate_Rd_good_input.Rd b/inst/extdata/testthat_data/validate_Rd_good_input.Rd
new file mode 100644
index 0000000..da0fbb7
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_good_input.Rd
@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_missing_items.Rd b/inst/extdata/testthat_data/validate_Rd_missing_items.Rd
new file mode 100644
index 0000000..154e036
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_missing_items.Rd
@@ -0,0 +1,25 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_alternatives.Rd b/inst/extdata/testthat_data/validate_Rd_no_alternatives.Rd
new file mode 100644
index 0000000..14b9f44
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_alternatives.Rd
@@ -0,0 +1,33 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{}
+\item{Range of possible values}{0--Inf}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_description.Rd b/inst/extdata/testthat_data/validate_Rd_no_description.Rd
new file mode 100644
index 0000000..8fb60e6
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_description.Rd
@@ -0,0 +1,31 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Biomass
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_examples.Rd b/inst/extdata/testthat_data/validate_Rd_no_examples.Rd
new file mode 100644
index 0000000..2218027
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_examples.Rd
@@ -0,0 +1,33 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_range_of_possible_values.Rd b/inst/extdata/testthat_data/validate_Rd_no_range_of_possible_values.Rd
new file mode 100644
index 0000000..6df97a2
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_range_of_possible_values.Rd
@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_rationale.Rd b/inst/extdata/testthat_data/validate_Rd_no_rationale.Rd
new file mode 100644
index 0000000..8f4badc
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_rationale.Rd
@@ -0,0 +1,27 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+\item{Units}{mt}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/inst/extdata/testthat_data/validate_Rd_no_units.Rd b/inst/extdata/testthat_data/validate_Rd_no_units.Rd
new file mode 100644
index 0000000..2de0f73
--- /dev/null
+++ b/inst/extdata/testthat_data/validate_Rd_no_units.Rd
@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Biomass.R
+\docType{data}
+\name{Biomass}
+\alias{Biomass}
+\title{Biomass}
+\format{
+\describe{
+\item{Examples}{spawning biomass, age three-plus biomass, exploitable
+biomass, January 1 biomass}
+\item{Rationale}{Measurements of biomass should be better defined making
+it clear what year classes and sexes it includes. Historically, verbose
+labels, e.g., January 1 biomass of age-three plus fish in 2022, are not
+typically used; instead, labels are short, e.g., 2022 3+ biomass.
+Additional ambiguity can come from the lack of knowledge regarding the
+unit of measurement, which should always be metric tons. Some alternatives
+are not interchangeable because they are in different units, e.g.,
+abundance, which is in terms of numbers rather than weight.}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
+\item{Range of possible values}{0--Inf}
+\item{Units}{}
+}
+}
+\usage{
+Biomass
+}
+\description{
+Weight of fish within a stock. If referring to a certain portion of the
+stock, it should be made clear what portion of the stock the biomass
+pertains to. Model output related to biomass is assumed to be measured
+at the beginning of the year unless otherwise specified.
+}
+\keyword{datasets}
diff --git a/key_terms_frequency.R b/key_terms_frequency.R
deleted file mode 100644
index d86cd67..0000000
--- a/key_terms_frequency.R
+++ /dev/null
@@ -1,138 +0,0 @@
-
-library(pdftools)
-library(tm)
-library(stringr)
-library(wordcloud)
-library(RColorBrewer)
-
-working_path <- "C:/Users/bai.li/Documents/GitHub/data_dictionary/StockAssessment"
-
-file_list <- list.files(path = working_path, pattern = "pdf$")
-
-file_path <- file.path(working_path, file_list)
-
-# Define key terms ---------------------------------------------------------------
-
-key_terms <- c(
-  "biomass|b",
-  "spawning stock biomass|ssb|spawning stock output",
-  "unfished|virgin|equilibrium",
-  "recruitment|age-0 fish",
-  "catch",
-  "landings|retained catch",
-  "catch per unit effort|cpue|catch rate|index of abundance",
-  "maximum sustainable yield|msy|msyproxy",
-  "instantaneous mortality rate|z",
-  "instantaneous fishing mortality rate|f|harvest rate|exploitation rate",
-  "fmsy|fproxy",
-  "spawning per recruit|spr|spr30%",
-  "weight|kg|mass",
-  "length composition|length frequency",
-  "age composition|age frequency",
-  "forecast|projection",
-  "sex|gender",
-  "logr0|lnr0|r0|log(r0)",
-  "plus group",
-  "cohort|recruit",
-  "metier|fleet",
-  "fraction unfished|depletion|relative spawning biomass",
-  "fork length|FL",
-  "stock|population",
-  "fishery",
-  "fishing"
-)
-
-xlabels <- c(
-  "biomass",
-  "spawning stock biomass",
-  "unfished",
-  "recruitment",
-  "catch",
-  "landings",
-  "catch per unite effort",
-  "maximum sustainable yield",
-  "instantaneous mortality rate",
-  "instantaneous fishing mortality rate",
-  "fmsy",
-  "spawning per recruit",
-  "weight",
-  "length composition",
-  "age composition",
-  "forecast",
-  "sex",
-  "logr0",
-  "plus group",
-  "cohort",
-  "metier",
-  "fraction unfished",
-  "fork length",
-  "stock",
-  "fishery",
-  "fishing"
-)
-
-
-# key_terms <- c("unfished", "virgin", "equilibrium")
-# key_terms <- c("landings", "retained catch")
-# 
-# xlabels <- key_terms
-
-# Create empty database ----------------------------------------------------------------
-
-database <- data.frame(matrix(NA, ncol = (2 + length(key_terms)), nrow = length(file_list))) # column 1: ID; column 2: File_Name
-
-colnames(database) <- c("ID", "File_Name", key_terms)
-
-for (i in seq_along(file_list)) {
-  print(i)
-  file <- file_path[i]
-
-  # Create metadata of files
-  docs <- tm::Corpus(URISource(file),
-    readerControl = list(reader = readPDF)
-  )
-
-  # Convert symbols to space
-  toSpace <- tm::content_transformer(
-    function(x, pattern) gsub(pattern, " ", x)
-  )
-  docs <- tm::tm_map(docs, toSpace, "/")
-  docs <- tm::tm_map(docs, toSpace, "@")
-  docs <- tm::tm_map(docs, toSpace, "\\|")
-
-  # Convert text to lower case
-  docs <- tm::tm_map(
-    docs,
-    content_transformer(tolower)
-  )
-
-  # Remove punctuations
-  docs <- tm::tm_map(docs, removePunctuation)
-
-  # Eliminate extra white spaces
-  docs <- tm::tm_map(docs, stripWhitespace)
-
-  database$ID[i] <- i
-  database$File_Name[i] <- file_list[i]
-
-  for (j in seq_along(key_terms)) {
-    database[i, key_terms[j]] <- sum(stringr::str_count(docs[[1]]$content, paste("\\b", key_terms[j], "\\b", sep = ""))) # Match if the current position is a word boundary
-  }
-}
-write.csv(database, file.path(working_path, "key_terms_frequency.csv"), row.names = F)
-
-
-# Plot results ------------------------------------------------------------
-
-word_frequency <- apply(database[3:ncol(database)], 2, sum)
-
-par(mar = c(6, 4, 1, 1))
-terms_barplot <- barplot(height = word_frequency, xaxt = "n", ylab = "Frequency")
-text(terms_barplot - 0.25, par("usr")[3] - 0.25, xlabels, xpd = TRUE, srt = 40, adj = 1, cex = 0.6)
-
-par(mar = c(1, 1, 1, 1))
-wordcloud(
-  words = xlabels, freq = word_frequency, random.order = FALSE, rot.per = 0.35,
-  colors = brewer.pal(8, "Dark2")
-)
-
diff --git a/man/Biomass.Rd b/man/Biomass.Rd
index 92793e4..da0fbb7 100644
--- a/man/Biomass.Rd
+++ b/man/Biomass.Rd
@@ -16,7 +16,8 @@ Additional ambiguity can come from the lack of knowledge regarding the
 unit of measurement, which should always be metric tons. Some alternatives
 are not interchangeable because they are in different units, e.g.,
 abundance, which is in terms of numbers rather than weight.}
-\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish), biomass wet weight, biomass index}
+\item{Alternatives}{stock biomass, total biomass, abundance (numbers of fish),
+biomass wet weight, biomass index}
 \item{Range of possible values}{0--Inf}
 \item{Units}{mt}
 }
diff --git a/man/Catch.Rd b/man/Catch.Rd
index c093698..8d8942c 100644
--- a/man/Catch.Rd
+++ b/man/Catch.Rd
@@ -10,7 +10,7 @@
 \item{Rationale}{Landings and catch are sometimes thought to be
 interchangeable but they are not given that catch can also include
 bycatch or unwanted catch.}
-\item{Alternatives}{total mortality}
+\item{Alternatives}{total mortality, harvest, total removals}
 \item{Range of possible values}{0--Inf}
 \item{Units}{mt, numbers}
 }
diff --git a/man/FishingMortalityAtMaximumSustainableYield.Rd b/man/FishingMortalityAtMaximumSustainableYield.Rd
index a0f291e..fdb0195 100644
--- a/man/FishingMortalityAtMaximumSustainableYield.Rd
+++ b/man/FishingMortalityAtMaximumSustainableYield.Rd
@@ -3,10 +3,7 @@
 \docType{data}
 \name{FishingMortalityAtMaximumSustainableYield}
 \alias{FishingMortalityAtMaximumSustainableYield}
-\title{Fishing mortality at maximum sustainable yield (FMSY)
-A biological reference point for fisheries management
-based on the fishing mortality rate (F) that achieves the maximum
-sustainable yield (MSY).}
+\title{Fishing mortality at maximum sustainable yield (FMSY)}
 \format{
 \describe{
 \item{Examples}{}
@@ -15,8 +12,8 @@ calculated values is inconsistent. For example, some use subscripts
 where the subscript can be in either all capital letters or all
 lower-case letters, some use lower-case letters for the type of reference
 point, and some use all capital letters.}
-\item{Alternatives: Fproxy, F_msy, Fmsy}{}
-\item{Range of possible values: 0--Inf}{}
+\item{Alternatives}{Fproxy, F_msy, Fmsy}
+\item{Range of possible values}{0--Inf}
 \item{Units}{\code{time^{-1}}}
 }
 }
@@ -24,7 +21,6 @@ point, and some use all capital letters.}
 FishingMortalityAtMaximumSustainableYield
 }
 \description{
-Fishing mortality at maximum sustainable yield (FMSY)
 A biological reference point for fisheries management
 based on the fishing mortality rate (F) that achieves the maximum
 sustainable yield (MSY).
diff --git a/man/Forecast.Rd b/man/Forecast.Rd
index fa144ca..1289f9e 100644
--- a/man/Forecast.Rd
+++ b/man/Forecast.Rd
@@ -19,6 +19,6 @@ it depends on an assumption about future catches.}
 Forecast
 }
 \description{
-A probabilistic statement about future events.
+A probabilistic statement about future events based on what will happen.
 }
 \keyword{datasets}
diff --git a/man/Projection.Rd b/man/Projection.Rd
new file mode 100644
index 0000000..48aedf9
--- /dev/null
+++ b/man/Projection.Rd
@@ -0,0 +1,24 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Projection.R
+\docType{data}
+\name{Projection}
+\alias{Projection}
+\title{Projection}
+\format{
+\describe{
+\item{Examples}{short-term projection}
+\item{Rationale}{Future weather is a forecast because it does not require
+an if statement, whereas future spawning biomass is a projection because
+it depends on an assumption about future catches.}
+\item{Alternatives}{forecast, prediction}
+\item{Range of possible values}{}
+\item{Units}{}
+}
+}
+\usage{
+Projection
+}
+\description{
+A probabilistic statement about future events based on what might happen.
+}
+\keyword{datasets}
diff --git a/man/SpawningBiomass.Rd b/man/SpawningBiomass.Rd
index cc296e2..c5f52e7 100644
--- a/man/SpawningBiomass.Rd
+++ b/man/SpawningBiomass.Rd
@@ -23,19 +23,15 @@ spawning stock output (eggs)}
 SpawningBiomass()
 }
 \description{
-\enumerate{
-\item The total weight of all fish (both males and females)
-in the population that contribute to reproduction. Often
-conventionally defined as the biomass of all individuals
-beyond “age at first maturity” or “size at first maturity,”
-i.e. beyond the age or size class in which 50 percent of
-the individuals are mature; 2. The total biomass of fish
-of reproductive age during the breeding season of a
-stock. Most often used as a proxy for measuring
-egg production, the SSB depends on the abundance of
-the various age classes composing the stock and their
-past exploitation pattern, rate of growth, fishing and
-natural mortality rates, onset of sexual maturity, and
-environmental conditions.
-}
+The mass of fish (males and females or females only) in the
+population that contribute to reproduction. Often conventionally
+defined as the product of weight at age and the proportion
+mature at age. Alternatively, it can be defined as the biomass of
+all individuals at or above “age at 50 percent maturity” or “size
+at 50 percent maturity” or the total biomass of fish of reproductive
+age during the breeding season of a population. Spawning biomass depends on the
+abundance of the various age classes composing the population and their
+past exploitation pattern, rate of growth, fishing and natural mortality
+rates, onset of sexual maturity, and environmental conditions. Most often
+used as a proxy for measuring egg production.
 }
diff --git a/man/add_object.Rd b/man/add_object.Rd
index 5ce1e40..78e4ebd 100644
--- a/man/add_object.Rd
+++ b/man/add_object.Rd
@@ -4,11 +4,14 @@
 \alias{add_object}
 \title{Function to add an object to the JSON}
 \usage{
-add_object(json_obj, input_list)
+add_object(input_list)
 }
 \arguments{
 \item{input_list}{A list of fields corresponding to entries. Must include
-\code{name,description,Units}}
+\code{name,description,Examples, Units, Rationale, Alternatives, Range of possible values}}
+}
+\value{
+An R list in the JSON format which includes the new term.
 }
 \description{
 Function to add an object to the JSON
diff --git a/man/validate_Rd.Rd b/man/validate_Rd.Rd
new file mode 100644
index 0000000..aedea1a
--- /dev/null
+++ b/man/validate_Rd.Rd
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/validate_Rd.R
+\name{validate_Rd}
+\alias{validate_Rd}
+\title{Function to validate terms in the dictionary.}
+\usage{
+validate_Rd(Rd_file)
+}
+\arguments{
+\item{Rd_file}{a Rd filename to use as input.}
+}
+\value{
+a message if the term passes all validations.
+}
+\description{
+The dictionary terms are written in R documentation (Rd) format.
+This function reads the Rd file using the \code{tools::parse_Rd} function
+validate the information in each section (e.g., examples, rationale,
+range of possible values, etc.).
+}
diff --git a/tests/testthat.R b/tests/testthat.R
new file mode 100644
index 0000000..8261ee3
--- /dev/null
+++ b/tests/testthat.R
@@ -0,0 +1,5 @@
+library(testthat)
+library(fishdictionary)
+library(tools) # For test-validate-Rd.R
+
+test_check("fishdictionary")
\ No newline at end of file
diff --git a/tests/testthat/test-validate-Rd.R b/tests/testthat/test-validate-Rd.R
new file mode 100644
index 0000000..57fce13
--- /dev/null
+++ b/tests/testthat/test-validate-Rd.R
@@ -0,0 +1,41 @@
+test_that("validate_Rd validators work as expected", {
+
+  pkg_path <- find.package("fishdictionary")
+  
+  if (!file.exists(file.path(pkg_path, "inst"))) {
+    validate_Rd_path <- file.path(pkg_path, "extdata", "testthat_data")
+  } else {
+    validate_Rd_path <- file.path(pkg_path, "inst", "extdata", "testthat_data")
+  }
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_description.Rd")
+  expect_error(validate_Rd(Rd_file), 
+               regexp = "Description is not provided. This should be capitalized and not end in a period.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_examples.Rd")
+  expect_error(validate_Rd(Rd_file), 
+               regexp = "Examples are not provided. Use NA if there is no input for examples.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_rationale.Rd")
+  expect_error(validate_Rd(Rd_file), 
+               regexp = "Rationale is not provided.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_alternatives.Rd")
+  expect_error(validate_Rd(Rd_file), 
+               regexp = "Alternatives are not provided. Use NA if there is no input for alternatives.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_range_of_possible_values.Rd")
+  expect_error(validate_Rd(Rd_file),
+               regexp = "Range of possible values is not provided. Use NA if there is no input for range of possible values.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_no_units.Rd")
+  expect_error(validate_Rd(Rd_file),
+               regexp = "Units are not provided. Use NA if there is no input for units.")
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_good_input.Rd")
+  expect_message(validate_Rd(Rd_file),
+               regexp = paste("Term Biomass has passed all validations!"))
+  
+  Rd_file <- file.path(validate_Rd_path, "validate_Rd_missing_items.Rd")
+  expect_error(validate_Rd(Rd_file))
+})
\ No newline at end of file