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<li class="announcements"><a href="/subpages/announcements.html">Announcements</a></li>
<li class="syllabus"><a href="/subpages/syllabus.html">Syllabus</a></li>
<li class="lectures"><a href="/subpages/lectures.html">Lectures</a></li>
<li class="seminars"><a href="/subpages/seminars.html">Seminars</a></li>
<li class="assignments"><a href="/subpages/assignments.html">Course work</a></li>
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<div id="statistical-methods-for-high-dimensional-biology" class="section level1">
<h1>Statistical Methods for High Dimensional Biology</h1>
<p><span style="color: red"><strong>Next deadline: Seminar 3 due - Feb. 1st, 2019</strong></span></p>
<p>Please complete <span style="color: blue"><a href="https://docs.google.com/forms/d/e/1FAIpQLSd8WlRLiBRaNrNk5PEY87nLkEPjZ60BcdTMUU0JAQRyMkkNsg/viewform?usp=sf_link">this survey</a></span> as soon as you see this post so we can set up a repo for you! :)</p>
<div id="ubc-stat-540" class="section level3">
<h3>UBC STAT 540</h3>
<p>STAT 540 is a 3 credit course with a mandatory computing seminar.</p>
<p>Cross-listed as STAT 540, BIOF 540, GSAT 540</p>
</div>
<div id="time-and-location" class="section level3">
<h3>Time and Location</h3>
<p>02 January 2019 - 03 April 2019</p>
<div id="lecture-sec-201" class="section level4">
<h4>Lecture (Sec 201)</h4>
<p><strong>Time</strong>: Mon Wed 9:30 - 11am</p>
<p><strong>Location</strong>: ESB 2012</p>
</div>
<div id="seminar-computing-lab-s2a-registration-is-required" class="section level4">
<h4>Seminar / computing lab (S2A) – REGISTRATION IS REQUIRED!</h4>
<p><strong>Time</strong>: every Wednesday 11am - 1pm. The TAs will remain in the lab until 1pm for general office hours.</p>
<p><strong>Location</strong>: Hugh Dempster Pavillion 201</p>
</div>
</div>
<div id="learning-objectives" class="section level3">
<h3>Learning objectives:</h3>
<ul>
<li>Explore and visualize genomics data</li>
<li>Apply tailored statitical methods for high dimensional biology data</li>
<li>Make your work reproducible, reusable, and shareable</li>
<li>Work with real data in a collaborative model</li>
</ul>
</div>
<div id="selected-topics" class="section level3">
<h3>Selected topics</h3>
<ul>
<li>Exploration, visualization, and quality assessment of high dimensional genomics data</li>
<li>Large scale statistical inference</li>
<li>Analysis of microarray, RNASeq, and epigenetics data</li>
<li>Principal component analysis (PCA)</li>
<li>Cluster analysis</li>
<li>Cross validation</li>
<li>Model selection for classification and linear regression models</li>
<li>Gene function and gene set analysis</li>
<li>Resampling and the bootstrap</li>
</ul>
</div>
<div id="more-info" class="section level3">
<h3>More info?</h3>
<p>Use the navigation bar above!</p>
<p>The course organization on GitHub: <a href="https://github.com/STAT540-UBC" class="uri">https://github.com/STAT540-UBC</a></p>
<p>Repo that creates this website: <a href="https://github.com/STAT540-UBC/STAT540-UBC.github.io" class="uri">https://github.com/STAT540-UBC/STAT540-UBC.github.io</a></p>
<p>Repo that supports the Discussion forum: <a href="https://github.com/STAT540-UBC/Discussion" class="uri">https://github.com/STAT540-UBC/Discussion</a></p>
</div>
<div id="major-deadlines" class="section level3">
<h3>Major deadlines</h3>
<table>
<thead>
<tr class="header">
<th align="left">Assignment</th>
<th align="left">Due Date</th>
<th align="left">Category</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">Seminar 1</td>
<td align="left">Fri 11 January 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="even">
<td align="left">Warm-Up</td>
<td align="left">Wed 16 January 2019</td>
<td align="left">Individual Assignment</td>
</tr>
<tr class="odd">
<td align="left">Seminar 2a&b</td>
<td align="left">Fri 18 January 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="even">
<td align="left">Project Groups and Initial Proposal</td>
<td align="left">Wed 23 January 2019</td>
<td align="left">Group Project</td>
</tr>
<tr class="odd">
<td align="left">Seminar 2c</td>
<td align="left">Fri 25 January 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="even">
<td align="left">Seminar 3</td>
<td align="left">Fri 01 February 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="odd">
<td align="left">Finalized Project Proposal</td>
<td align="left">Wed 13 February 2019</td>
<td align="left">Group Project</td>
</tr>
<tr class="even">
<td align="left">Seminar 4</td>
<td align="left">Fri 15 February 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="odd">
<td align="left">Paper Critique</td>
<td align="left">Wed 20 February 2019</td>
<td align="left">Paper Critique</td>
</tr>
<tr class="even">
<td align="left">Seminar 6</td>
<td align="left">Fri 22 February 2019</td>
<td align="left">Seminar</td>
</tr>
<tr class="odd">
<td align="left">Q1-3</td>
<td align="left">Thu 28 February 2019</td>
<td align="left">Individual Assignment</td>
</tr>
<tr class="even">
<td align="left">Project Progress Report</td>
<td align="left">Wed 13 March 2019</td>
<td align="left">Group Project</td>
</tr>
<tr class="odd">
<td align="left">Q4-5</td>
<td align="left">Sat 23 March 2019</td>
<td align="left">Individual Assignment</td>
</tr>
<tr class="even">
<td align="left">Presentation Submission</td>
<td align="left">Mon 01 April 2019</td>
<td align="left">Group Project</td>
</tr>
<tr class="odd">
<td align="left">Github Repo</td>
<td align="left">Wed 03 April 2019</td>
<td align="left">Group Project</td>
</tr>
<tr class="even">
<td align="left">Individual Report</td>
<td align="left">Thu 04 April 2019</td>
<td align="left">Group Project</td>
</tr>
</tbody>
</table>
</div>
<div id="assignment-timeline" class="section level3">
<h3>Assignment Timeline</h3>
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