From 47e9a95467618fb77bcb2c2f3442cb10495e06bf Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Sun, 7 Apr 2024 15:35:47 -0400
Subject: [PATCH] Add test data.

---
 .../tests/data/dsD/dataset_description.json   | 11 +++
 ...b-01_task-rest_echo-1_part-mag_bold.nii.gz |  0
 ...b-01_task-rest_echo-1_part-phase_bold.json | 94 +++++++++++++++++++
 ...01_task-rest_echo-1_part-phase_bold.nii.gz |  0
 ...sub-01_task-rest_echo-2_part-mag_bold.json | 93 ++++++++++++++++++
 ...b-01_task-rest_echo-2_part-mag_bold.nii.gz |  0
 ...b-01_task-rest_echo-2_part-phase_bold.json | 94 +++++++++++++++++++
 ...01_task-rest_echo-2_part-phase_bold.nii.gz |  0
 ...sub-01_task-rest_echo-3_part-mag_bold.json | 93 ++++++++++++++++++
 ...b-01_task-rest_echo-3_part-mag_bold.nii.gz |  0
 ...b-01_task-rest_echo-3_part-phase_bold.json | 94 +++++++++++++++++++
 ...01_task-rest_echo-3_part-phase_bold.nii.gz |  0
 ...sub-01_task-rest_echo-4_part-mag_bold.json | 93 ++++++++++++++++++
 ...b-01_task-rest_echo-4_part-mag_bold.nii.gz |  0
 ...b-01_task-rest_echo-4_part-phase_bold.json | 94 +++++++++++++++++++
 ...01_task-rest_echo-4_part-phase_bold.nii.gz |  0
 ...sub-01_task-rest_echo-5_part-mag_bold.json | 93 ++++++++++++++++++
 ...b-01_task-rest_echo-5_part-mag_bold.nii.gz |  0
 ...b-01_task-rest_echo-5_part-phase_bold.json | 94 +++++++++++++++++++
 ...01_task-rest_echo-5_part-phase_bold.nii.gz |  0
 20 files changed, 853 insertions(+)
 create mode 100644 sdcflows/tests/data/dsD/dataset_description.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-mag_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.nii.gz
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.json
 create mode 100644 sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.nii.gz

diff --git a/sdcflows/tests/data/dsD/dataset_description.json b/sdcflows/tests/data/dsD/dataset_description.json
new file mode 100644
index 0000000000..5882169df5
--- /dev/null
+++ b/sdcflows/tests/data/dsD/dataset_description.json
@@ -0,0 +1,11 @@
+{
+    "Name": "Test Dataset D for MEDIC, only empty files",
+    "BIDSVersion": "",
+    "License": "CC0",
+    "Authors": ["Salo T."],
+    "Acknowledgements": "",
+    "HowToAcknowledge": "",
+    "Funding": "",
+    "ReferencesAndLinks": [""],
+    "DatasetDOI": ""
+}
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-mag_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-mag_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.json
new file mode 100644
index 0000000000..fbe4bbcf8f
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.json
@@ -0,0 +1,94 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.0142,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "P",
+        "MB",
+        "TE1",
+        "ND",
+        "MOSAIC",
+        "PHASE"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
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+        1.45,
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+        1.305,
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+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2,
+    "Units": "arbitrary"
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-1_part-phase_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.json
new file mode 100644
index 0000000000..3475655916
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.json
@@ -0,0 +1,93 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.03893,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "M",
+        "MB",
+        "TE2",
+        "ND",
+        "NORM",
+        "MOSAIC"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
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+        1.305,
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+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-mag_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.json
new file mode 100644
index 0000000000..1691b161de
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.json
@@ -0,0 +1,94 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.03893,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "P",
+        "MB",
+        "TE2",
+        "ND",
+        "MOSAIC",
+        "PHASE"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
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+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2,
+    "Units": "arbitrary"
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-2_part-phase_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.json
new file mode 100644
index 0000000000..773894cc81
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.json
@@ -0,0 +1,93 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.06366,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "M",
+        "MB",
+        "TE3",
+        "ND",
+        "NORM",
+        "MOSAIC"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
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+        1.305,
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+        0.725,
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+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-mag_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.json
new file mode 100644
index 0000000000..523a7f28cd
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.json
@@ -0,0 +1,94 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.06366,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "P",
+        "MB",
+        "TE3",
+        "ND",
+        "MOSAIC",
+        "PHASE"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015,
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
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+        0.29,
+        1.015,
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+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2,
+    "Units": "arbitrary"
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-3_part-phase_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.json
new file mode 100644
index 0000000000..3e022762f8
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.json
@@ -0,0 +1,93 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.08839,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "M",
+        "MB",
+        "TE4",
+        "ND",
+        "NORM",
+        "MOSAIC"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
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+        1.015,
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+        1.45,
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+        0.725,
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+        1.16,
+        0.145,
+        0.87,
+        1.595,
+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-mag_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.json
new file mode 100644
index 0000000000..bdbaee1286
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.json
@@ -0,0 +1,94 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.08839,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "P",
+        "MB",
+        "TE4",
+        "ND",
+        "MOSAIC",
+        "PHASE"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
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+        0.725,
+        1.45,
+        0.435,
+        1.16,
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+    ],
+    "SpacingBetweenSlices": 2,
+    "Units": "arbitrary"
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-4_part-phase_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.json
new file mode 100644
index 0000000000..54a616bbf5
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.json
@@ -0,0 +1,93 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.11312,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "M",
+        "MB",
+        "TE5",
+        "ND",
+        "NORM",
+        "MOSAIC"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
+        0.87,
+        1.595,
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+        1.015
+    ],
+    "SpacingBetweenSlices": 2
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-mag_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.json b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.json
new file mode 100644
index 0000000000..7714ed273a
--- /dev/null
+++ b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.json
@@ -0,0 +1,94 @@
+{
+    "B0FieldIdentifier": "medic",
+    "B0FieldSource": "medic",
+    "EchoTime": 0.11312,
+    "FlipAngle": 68,
+    "ImageType": [
+        "ORIGINAL",
+        "PRIMARY",
+        "P",
+        "MB",
+        "TE5",
+        "ND",
+        "MOSAIC",
+        "PHASE"
+    ],
+    "PhaseEncodingDirection": "j",
+    "RepetitionTime": 1.761,
+    "SliceTiming": [
+        0,
+        0.725,
+        1.45,
+        0.435,
+        1.16,
+        0.145,
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+        1.595,
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+        0.58,
+        1.305,
+        0.29,
+        1.015
+    ],
+    "SpacingBetweenSlices": 2,
+    "Units": "arbitrary"
+}
\ No newline at end of file
diff --git a/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.nii.gz b/sdcflows/tests/data/dsD/sub-01/func/sub-01_task-rest_echo-5_part-phase_bold.nii.gz
new file mode 100644
index 0000000000..e69de29bb2