diff --git a/niworkflows/data/nipreps.json b/niworkflows/data/nipreps.json index 72ff48a93c3..242c3684426 100644 --- a/niworkflows/data/nipreps.json +++ b/niworkflows/data/nipreps.json @@ -73,6 +73,10 @@ "name": "space", "pattern": "[_/\\\\]+space-([a-zA-Z0-9\\+]+)" }, + { + "name": "volspace", + "pattern": "[_/\\\\]+volspace-([a-zA-Z0-9\\+]+)" + }, { "name": "suffix", "pattern": "[._]*([a-zA-Z0-9]*?)\\.[^/\\\\]+$" @@ -149,13 +153,18 @@ "name": "cohort", "pattern": "[_/\\\\]+cohort-0*(\\d+)", "dtype": "int" + }, + { + "name": "volcohort", + "pattern": "[_/\\\\]+volcohort-0*(\\d+)", + "dtype": "int" } ], "default_path_patterns": [ "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_hemi-{hemi}]_from-{from}_to-{to}_mode-{mode|image}_{suffix|xfm}{extension<.txt|.h5>}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}]_hemi-{hemi}[_space-{space}][_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.surf.gii|.shape.gii>}", - "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dscalar.nii|.json>}", + "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_volspace-{volspace}][_volcohort-{volcohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dscalar.nii|.json>}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}]_desc-{desc}_{suffix|mask}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}]_label-{label}[_desc-{desc}]_{suffix|probseg}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", @@ -166,7 +175,8 @@ "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix|timeseries}{extension<.json|.tsv>|.tsv}", "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix|components}{extension<.json|.tsv|.nii|.nii.gz>|.tsv}", "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix|decomposition}{extension<.json>|.json}", - "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_hemi-{hemi}][_space-{space}][_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dtseries.nii|.dtseries.json|.func.gii|.func.json>}", + "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_hemi-{hemi}][_space-{space}][_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.func.gii|.func.json>}", + "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_hemi-{hemi}][_space-{space}][_cohort-{cohort}][_volspace-{volspace}][_volcohort-{volcohort}][_res-{resolution}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dtseries.nii|.dtseries.json>}", "sub-{subject}[/ses-{session}]/{datatype}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|dwi}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.json|.nii.gz|.nii>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|dwi}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_space-{space}][_cohort-{cohort}][_res-{resolution}]_desc-{desc}_{suffix}{extension<.json|.nii.gz|.nii>|.nii.gz}", @@ -177,9 +187,9 @@ "sub-{subject}[/ses-{session}]/{datatype|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix}{extension<.json|.tsv>|.tsv}", "sub-{subject}[/ses-{session}]/{datatype|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.json|.tsv>|.tsv}", "sub-{subject}[/ses-{session}]/{datatype|fmap}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_dir-{direction}][_run-{run}][_part-{part}][_space-{space}][_cohort-{cohort}][_res-{resolution}][_fmapid-{fmapid}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}", + "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_volspace-{volspace}][_volcohort-{volcohort}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}", "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_cohort-{cohort}][_fmapid-{fmapid}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}", "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}", - "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}" + "sub-{subject}/{datatype}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_part-{part}][_space-{space}][_cohort-{cohort}][_volspace-{volspace}][_volcohort-{volcohort}][_desc-{desc}]_{suffix}{extension<.html|.svg>|.svg}" ] }