diff --git a/docs/assets/fmriprep-bootcamp-geneva2024/day1-03-bids-hands-on/index.html b/docs/assets/fmriprep-bootcamp-geneva2024/day1-03-bids-hands-on/index.html index d328146..5383011 100644 --- a/docs/assets/fmriprep-bootcamp-geneva2024/day1-03-bids-hands-on/index.html +++ b/docs/assets/fmriprep-bootcamp-geneva2024/day1-03-bids-hands-on/index.html @@ -871,6 +871,8 @@ # Those having issues on bamboo +Add to the end of your `$HOME/.bashrc`: + ``` Bash # >>> conda initialize >>> # !! Contents within this block are managed by 'conda init' !! diff --git a/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html b/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html index 249f247..518e904 100644 --- a/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html +++ b/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html @@ -493,7 +493,7 @@ srun apptainer run mriqc_latest.sif \ $HOME/ds005454/ $HOME/derivatives/mriqc-24.0.2 participant \ - -m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8 + -m T1w -vv --dsname bootcamp --nprocs 12 --omp-nthreads 8 ``` diff --git a/docs/users/educational.md b/docs/users/educational.md index 8c57d07..ec1426a 100644 --- a/docs/users/educational.md +++ b/docs/users/educational.md @@ -8,6 +8,8 @@ - [BIDS Hands-on](../../assets/fmriprep-bootcamp-geneva2024/day1-03-bids-hands-on) - [Data and HPC](../../assets/fmriprep-bootcamp-geneva2024/day1-04-data-and-hpc) - [Containers](../../assets/fmriprep-bootcamp-geneva2024/day1-05-containers) +- [Apptainer in UNIGE's HPC](../../assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer) +- [Links](../../assets/fmriprep-bootcamp-geneva2024/day2-links) ## Online books