From 50c6bd26710a12d47e913a3ef15b629f5f7e3749 Mon Sep 17 00:00:00 2001 From: Oscar Esteban Date: Tue, 10 Sep 2024 11:44:45 +0200 Subject: [PATCH] fix: minor fixes --- .../day1-04-containers/index.html | 2 +- .../day1-06-apptainer/index.html | 11 +++++------ 2 files changed, 6 insertions(+), 7 deletions(-) diff --git a/docs/assets/fmriprep-bootcamp-geneva2024/day1-04-containers/index.html b/docs/assets/fmriprep-bootcamp-geneva2024/day1-04-containers/index.html index 773624b..3f9be38 100644 --- a/docs/assets/fmriprep-bootcamp-geneva2024/day1-04-containers/index.html +++ b/docs/assets/fmriprep-bootcamp-geneva2024/day1-04-containers/index.html @@ -742,7 +742,7 @@ ``` * .larger[*fMRIPrep*] ``` Bash - docker pull nipreps/fmriprep:24.0.1rc0 + docker pull nipreps/fmriprep:24.1.0rc0 ``` ] ] diff --git a/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html b/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html index 16cde48..249f247 100644 --- a/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html +++ b/docs/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html @@ -480,8 +480,9 @@ #SBATCH --time=1:00:00 #NOTE: likely longer than generally needed #SBATCH --ntasks 1 #SBATCH --cpus-per-task=16 -#SBATCH --mem-per-cpu=4G -#SBATCH --partition=public-cpu +#SBATCH --mem-per-cpu=1G +#SBATCH --partition=shared-cpu +#SBATCH --reservation=share_courvoisier_workshop_570 # Outputs ---------------------------------- #SBATCH --output log/%x-%A-%a.out @@ -523,11 +524,9 @@ We only run T1w images (`-m T1w`), we make it more verbose `-vv`, we name the dataset (`--dsname bootcamp`), we allow the workflow -to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`, -and preserve the intermediate files at `$HOME/scratch/work`: +to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`: ``` Bash - -m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8 \ - -w $HOME/scratch/work + -m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8 ```