diff --git a/nibabies/workflows/anatomical/fit.py b/nibabies/workflows/anatomical/fit.py index 11413053..9ebf091b 100644 --- a/nibabies/workflows/anatomical/fit.py +++ b/nibabies/workflows/anatomical/fit.py @@ -904,6 +904,7 @@ def init_infant_anat_fit_wf( sloppy=sloppy, omp_nthreads=omp_nthreads, templates=templates, + image_type=reference_anat, ) ds_template_registration_wf = init_ds_template_registration_wf( output_dir=str(output_dir), @@ -1729,6 +1730,7 @@ def init_infant_single_anat_fit_wf( sloppy=sloppy, omp_nthreads=omp_nthreads, templates=templates, + image_type=reference_anat, ) ds_template_registration_wf = init_ds_template_registration_wf( output_dir=str(output_dir), diff --git a/pyproject.toml b/pyproject.toml index 7da77712..650ec51b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,7 +25,7 @@ dependencies = [ "nireports >= 23.2.0", "nitime", "nitransforms >= 23.0.1", - "niworkflows >= 1.11.0", + "niworkflows >= 1.12.1", "numpy >= 1.21.0", "packaging", "pandas", @@ -33,7 +33,8 @@ dependencies = [ "pybids >= 0.15.0", "requests", "sdcflows >= 2.10.0", - "smriprep >= 0.16.1", +# "smriprep >= 0.16.1", + "smriprep @ git+https://github.com/nipreps/smriprep.git@master", "tedana >= 23.0.2", "templateflow >= 24.2.0", "toml",