From ab72393f0704926977b3190717ba5b6eac67e39c Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 29 Jul 2024 09:51:44 -0400 Subject: [PATCH] chore(deps): Update environment to use pybids 0.17.0 --- requirements.txt | 65 ++++++++++++++++++++++++++++++++++++++---------- 1 file changed, 52 insertions(+), 13 deletions(-) diff --git a/requirements.txt b/requirements.txt index 62d93145..55a28943 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,12 +1,14 @@ # This file was autogenerated by uv via the following command: -# uv pip compile --extra=container --strip-extras pyproject.toml -o requirements.txt -P 3.10 +# uv pip compile --extra=container --strip-extras pyproject.toml -o requirements.txt -p 3.11 acres==0.1.0 + # via fmriprep (pyproject.toml) annexremote==1.6.5 # via # datalad # datalad-next # datalad-osf apscheduler==3.10.4 + # via fmriprep (pyproject.toml) arrow==1.3.0 # via codecarbon astor==0.8.1 @@ -15,13 +17,15 @@ attrs==23.2.0 # via # niworkflows # sdcflows +backports-tarfile==1.2.0 + # via jaraco-context bids-validator==1.14.6 # via pybids bokeh==3.4.1 # via tedana -boto3==1.34.144 +boto3==1.34.149 # via datalad -botocore==1.34.144 +botocore==1.34.149 # via # boto3 # s3transfer @@ -45,21 +49,24 @@ click==8.1.7 # nipype # pybids codecarbon==2.5.0 + # via fmriprep (pyproject.toml) contourpy==1.2.1 # via # bokeh # matplotlib -cryptography==42.0.8 +cryptography==43.0.0 # via secretstorage cycler==0.12.1 # via matplotlib -datalad==1.1.1 +datalad==1.1.2 # via + # fmriprep (pyproject.toml) # datalad-next # datalad-osf datalad-next==1.5.0 # via datalad-osf datalad-osf==0.3.0 + # via fmriprep (pyproject.toml) distro==1.9.0 # via datalad docopt==0.6.2 @@ -74,6 +81,8 @@ fonttools==4.53.1 # via matplotlib formulaic==0.5.2 # via pybids +fsspec==2024.6.1 + # via universal-pathlib greenlet==3.0.3 # via sqlalchemy h5py==3.11.0 @@ -86,6 +95,10 @@ idna==3.7 # via requests imageio==2.34.2 # via scikit-image +importlib-metadata==8.2.0 + # via keyring +importlib-resources==6.4.0 + # via nireports indexed-gzip==1.8.7 # via smriprep interface-meta==1.3.0 @@ -134,6 +147,7 @@ lockfile==0.12.2 # via smriprep looseversion==1.3.0 # via + # fmriprep (pyproject.toml) # datalad # nipype # niworkflows @@ -156,7 +170,9 @@ matplotlib==3.9.1 # smriprep # tedana migas==0.4.0 - # via sdcflows + # via + # fmriprep (pyproject.toml) + # sdcflows more-itertools==10.3.0 # via # datalad-next @@ -171,6 +187,7 @@ networkx==3.3 # scikit-image nibabel==5.2.1 # via + # fmriprep (pyproject.toml) # mapca # nilearn # nipype @@ -189,24 +206,29 @@ nilearn==0.10.4 # tedana nipype==1.8.6 # via + # fmriprep (pyproject.toml) # nireports # niworkflows # sdcflows # smriprep nireports==23.2.1 nitime==0.11 + # via fmriprep (pyproject.toml) nitransforms==23.0.1 # via + # fmriprep (pyproject.toml) # niworkflows # sdcflows niworkflows==1.10.2 # via + # fmriprep (pyproject.toml) # sdcflows # smriprep num2words==0.5.13 # via pybids numpy==1.26.4 # via + # fmriprep (pyproject.toml) # bokeh # contourpy # formulaic @@ -236,6 +258,7 @@ osfclient==0.0.5 # via datalad-osf packaging==24.1 # via + # fmriprep (pyproject.toml) # bokeh # datalad # etelemetry @@ -249,6 +272,7 @@ packaging==24.1 # smriprep pandas==2.2.2 # via + # fmriprep (pyproject.toml) # bokeh # codecarbon # formulaic @@ -273,11 +297,14 @@ prometheus-client==0.20.0 prov==2.0.1 # via nipype psutil==6.0.0 - # via codecarbon + # via + # fmriprep (pyproject.toml) + # codecarbon py-cpuinfo==9.0.0 # via codecarbon -pybids==0.16.5 +pybids==0.17.0 # via + # fmriprep (pyproject.toml) # nireports # niworkflows # sdcflows @@ -319,7 +346,7 @@ pyyaml==6.0.1 # niworkflows # pybtex # smriprep -rapidfuzz==3.9.4 +rapidfuzz==3.9.5 # via codecarbon rdflib==6.3.2 # via @@ -327,6 +354,7 @@ rdflib==6.3.2 # prov requests==2.32.3 # via + # fmriprep (pyproject.toml) # codecarbon # datalad # etelemetry @@ -369,7 +397,8 @@ seaborn==0.13.2 # niworkflows secretstorage==3.3.3 # via keyring -sentry-sdk==2.10.0 +sentry-sdk==2.11.0 + # via fmriprep (pyproject.toml) simplejson==3.19.2 # via nipype six==1.16.0 @@ -387,8 +416,10 @@ svgutils==0.3.4 # nireports # niworkflows tedana==24.0.1 + # via fmriprep (pyproject.toml) templateflow==24.2.0 # via + # fmriprep (pyproject.toml) # nireports # niworkflows # sdcflows @@ -397,10 +428,12 @@ threadpoolctl==3.5.0 # via # scikit-learn # tedana -tifffile==2024.7.2 +tifffile==2024.7.24 # via scikit-image toml==0.10.2 - # via sdcflows + # via + # fmriprep (pyproject.toml) + # sdcflows tornado==6.4.1 # via bokeh tqdm==4.66.4 @@ -415,7 +448,9 @@ traits==6.3.2 # niworkflows # sdcflows transforms3d==0.4.2 - # via niworkflows + # via + # fmriprep (pyproject.toml) + # niworkflows types-python-dateutil==2.9.0.20240316 # via arrow typing-extensions==4.12.2 @@ -426,6 +461,8 @@ tzdata==2024.1 # via pandas tzlocal==5.2 # via apscheduler +universal-pathlib==0.2.2 + # via pybids urllib3==2.2.2 # via # botocore @@ -435,3 +472,5 @@ wrapt==1.16.0 # via formulaic xyzservices==2024.6.0 # via bokeh +zipp==3.19.2 + # via importlib-metadata