diff --git a/fmriprep/cli/parser.py b/fmriprep/cli/parser.py index fd77e2033..bdf01b433 100644 --- a/fmriprep/cli/parser.py +++ b/fmriprep/cli/parser.py @@ -636,10 +636,12 @@ def _slice_time_ref(value, parser): help='Disable FreeSurfer surface preprocessing.', ) g_fs.add_argument( - "--fs-reuse-base", + "--fs-no-resume", action="store_true", - dest="fs_reuse_base", - help="Reuse freesurfer base template (from longitudinal preprocessing)", + dest="fs_no_resume", + help="Import precomputed freesurfer without resuming " + "(longitudinal or fastsurfer data) " + "!expert option (you know what you're doing)!", ) g_carbon = parser.add_argument_group('Options for carbon usage tracking') diff --git a/fmriprep/config.py b/fmriprep/config.py index ae64e9d2c..983b3bb3b 100644 --- a/fmriprep/config.py +++ b/fmriprep/config.py @@ -561,7 +561,7 @@ class workflow(_Config): """Run *fieldmap-less* susceptibility-derived distortions estimation.""" hires = None """Run FreeSurfer ``recon-all`` with the ``-hires`` flag.""" - fs_reuse_base = None + fs_no_resume = None """Adjust pipeline to reuse base template of existing longitudinal freesurfer""" ignore = None """Ignore particular steps for *fMRIPrep*.""" diff --git a/fmriprep/workflows/base.py b/fmriprep/workflows/base.py index 8fd9a2091..df3268a5d 100644 --- a/fmriprep/workflows/base.py +++ b/fmriprep/workflows/base.py @@ -321,7 +321,7 @@ def init_single_subject_wf(subject_id: str): output_dir=fmriprep_dir, freesurfer=config.workflow.run_reconall, hires=config.workflow.hires, - fs_reuse_base=config.workflow.fs_reuse_base, + fs_no_resume=config.workflow.fs_no_resume, longitudinal=config.workflow.longitudinal, msm_sulc=msm_sulc, t1w=subject_data['t1w'],