diff --git a/.vscode/settings.json b/.vscode/settings.json
index 0282058e1..6027653f5 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -1,11 +1,9 @@
 {
-    "python.linting.flake8Enabled": true,
     "python.pythonPath": "/usr/local/miniconda/bin/python",
     "restructuredtext.confPath": "${workspaceFolder}/docs",
     "python.testing.pytestEnabled": true,
     "python.testing.unittestEnabled": false,
     "python.testing.nosetestsEnabled": false,
-    "python.linting.enabled": true,
     "python.testing.pytestArgs": [],
-    "python.linting.pylintEnabled": false
+    "editor.defaultFormatter": "charliermarsh.ruff",
 }
diff --git a/Dockerfile_devel b/Dockerfile_devel
index da320649c..0c05a6d59 100644
--- a/Dockerfile_devel
+++ b/Dockerfile_devel
@@ -26,8 +26,8 @@ ENV FMRIPREP_REGRESSION_SOURCE=/tmp/data/fmriprep_bold_truncated \
     FMRIPREP_REGRESSION_REPORTS=/tmp/data/reports \
     FMRIPREP_DEV=1
 
-# use flake8 as linter
-RUN conda install -y flake8
+# use ruff as linter
+RUN conda install -y ruff
 
 RUN mkdir -p /tmp/data
 
diff --git a/pyproject.toml b/pyproject.toml
index 2273274bb..097439881 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -57,10 +57,8 @@ doc = [
     "sphinx_rtd_theme>=0.5.2",
 ]
 dev = [
-    "black ~= 22.3.0",
+    "ruff ~= 0.4.3",
     "pre-commit",
-    "isort ~= 5.10.1",
-    "flake8-pyproject",
 ]
 duecredit = ["duecredit"]
 resmon = []
@@ -121,23 +119,6 @@ version-file = "fmriprep/_version.py"
 # Developer tool configurations
 #
 
-[tool.black]
-line-length = 99
-skip-string-normalization = true
-
-[tool.isort]
-profile = 'black'
-
-[tool.flake8]
-max-line-length = "99"
-doctests = "False"
-exclude = "*build/"
-ignore = ["W503", "E203"]
-per-file-ignores = [
-    "**/__init__.py : F401",
-    "docs/conf.py : E265",
-]
-
 [tool.pytest.ini_options]
 minversion = "6"
 testpaths = ["fmriprep/tests"]
diff --git a/wrapper/.flake8 b/wrapper/.flake8
deleted file mode 100644
index 61d908155..000000000
--- a/wrapper/.flake8
+++ /dev/null
@@ -1,2 +0,0 @@
-[flake8]
-max-line-length = 99
diff --git a/wrapper/pyproject.toml b/wrapper/pyproject.toml
index 6954d8a87..e7119072a 100644
--- a/wrapper/pyproject.toml
+++ b/wrapper/pyproject.toml
@@ -63,10 +63,6 @@ universal = true
 # Developer tool configurations
 #
 
-# Disable black
-[tool.black]
-exclude = ".*"
-
 [tool.ruff]
 line-length = 99