From 4a89f5fac379f503d53164c61628d0c265d3d003 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Tue, 26 Nov 2024 10:12:43 -0500 Subject: [PATCH] chore(build): Install Workbench CLI via conda --- Dockerfile | 9 --------- env.yml | 2 ++ 2 files changed, 2 insertions(+), 9 deletions(-) diff --git a/Dockerfile b/Dockerfile index 37f85d7a..533164fc 100644 --- a/Dockerfile +++ b/Dockerfile @@ -77,15 +77,6 @@ RUN mkdir -p /opt/afni-latest \ -name "3dAutomask" -or \ -name "3dvolreg" \) -delete -# Connectome Workbench 1.5.0 -FROM downloader AS workbench -RUN mkdir /opt/workbench && \ - curl -sSLO https://www.humanconnectome.org/storage/app/media/workbench/workbench-linux64-v1.5.0.zip && \ - unzip workbench-linux64-v1.5.0.zip -d /opt && \ - rm workbench-linux64-v1.5.0.zip && \ - rm -rf /opt/workbench/libs_linux64_software_opengl /opt/workbench/plugins_linux64 && \ - strip --remove-section=.note.ABI-tag /opt/workbench/libs_linux64/libQt5Core.so.5 - # Micromamba FROM downloader AS micromamba diff --git a/env.yml b/env.yml index d680f3a6..2defb977 100644 --- a/env.yml +++ b/env.yml @@ -29,6 +29,8 @@ dependencies: - ants=2.5 # Workflow dependencies: Convert3d - convert3d=1.4 + # Workflow dependencies: Connectome Workbench + - connectome-workbench-cli=2.0 # Workflow dependencies: FSL (versions pinned in 6.0.7.13) - fsl-bet2=2111.8 - fsl-flirt=2111.2