From e26943b5cdf3d1d61077edfe7bfd75c36cfad715 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Wed, 27 Nov 2024 08:46:57 -0500 Subject: [PATCH] DOC: Fix cut passages from `README` in documentation index file Fix cut passages from `README` in documentation index file: add comments around the flowchart image in the `README` file and change the `start-line` and `end-line` directive pair for the `end-before` and `start-after` pair to skip the flowchart image only. The `start-line` and `end-line` directives were making such that relevant passages of the `README` file providing context for the tool were not being included. Thus the text shown in the documentation index file had some missing parts, and was not making sense. --- README.rst | 4 ++++ docs/index.rst | 5 ++--- 2 files changed, 6 insertions(+), 3 deletions(-) diff --git a/README.rst b/README.rst index a90f0d37..56aad44c 100644 --- a/README.rst +++ b/README.rst @@ -47,9 +47,13 @@ More recently, Cieslak et al. [#r3]_ integrated both approaches in *SHORELine*, the work of ``eddy`` and *SHORELine*, while generalizing these methods to multiple acquisition schemes (single-shell, multi-shell, and diffusion spectrum imaging) using diffusion models available with DIPY [#r5]_. +.. BEGIN FLOWCHART + .. image:: https://raw.githubusercontent.com/nipreps/eddymotion/507fc9bab86696d5330fd6a86c3870968243aea8/docs/_static/eddymotion-flowchart.svg :alt: The eddymotion flowchart +.. END FLOWCHART + .. [#r1] S. Ben-Amitay et al., Motion correction and registration of high b-value diffusion weighted images, Magnetic Resonance in Medicine 67:1694–1702 (2012) .. [#r2] J. L. R. Andersson. et al., An integrated approach to correction for off-resonance effects and subject movement diff --git a/docs/index.rst b/docs/index.rst index 8f3de245..0467a8e4 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,9 +1,8 @@ .. include:: links.rst .. include:: ../README.rst - :end-line: 29 + :end-before: BEGIN FLOWCHART .. include:: ../README.rst - :start-line: 34 - + :start-after: END FLOWCHART .. image:: _static/eddymotion-flowchart.svg :alt: The eddymotion flowchart