@@ -145,14 +145,14 @@
diff --git a/main/_modules/eddymotion/data/pet.html b/main/_modules/eddymotion/data/pet.html
index 2de48300..2ea0b1dc 100644
--- a/main/_modules/eddymotion/data/pet.html
+++ b/main/_modules/eddymotion/data/pet.html
@@ -5,7 +5,7 @@
- eddymotion.data.pet - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.data.pet - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
@@ -145,14 +145,14 @@
diff --git a/main/_modules/eddymotion/data/utils.html b/main/_modules/eddymotion/data/utils.html
index 58b642ff..0b0895ac 100644
--- a/main/_modules/eddymotion/data/utils.html
+++ b/main/_modules/eddymotion/data/utils.html
@@ -5,7 +5,7 @@
- eddymotion.data.utils - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.data.utils - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
@@ -145,14 +145,14 @@
diff --git a/main/_modules/eddymotion/estimator.html b/main/_modules/eddymotion/estimator.html
index 51600b39..4aa8d59d 100644
--- a/main/_modules/eddymotion/estimator.html
+++ b/main/_modules/eddymotion/estimator.html
@@ -5,7 +5,7 @@
- eddymotion.estimator - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.estimator - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
@@ -145,14 +145,14 @@
diff --git a/main/_modules/eddymotion/model/base.html b/main/_modules/eddymotion/model/base.html
index 82e54c94..5cb08afc 100644
--- a/main/_modules/eddymotion/model/base.html
+++ b/main/_modules/eddymotion/model/base.html
@@ -5,7 +5,7 @@
- eddymotion.model.base - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.model.base - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
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diff --git a/main/_modules/eddymotion/viz.html b/main/_modules/eddymotion/viz.html
index 5991eb8e..44d20bf5 100644
--- a/main/_modules/eddymotion/viz.html
+++ b/main/_modules/eddymotion/viz.html
@@ -5,7 +5,7 @@
- eddymotion.viz - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.viz - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
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diff --git a/main/_modules/index.html b/main/_modules/index.html
index b02c01e3..a52c470b 100644
--- a/main/_modules/index.html
+++ b/main/_modules/index.html
@@ -5,7 +5,7 @@
- Overview: module code - eddymotion 24.0.0.dev162+gc073fdf documentation
+ Overview: module code - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -123,7 +123,7 @@
@@ -145,14 +145,14 @@
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diff --git a/main/_static/documentation_options.js b/main/_static/documentation_options.js
index 3cfcfd12..071de3e6 100644
--- a/main/_static/documentation_options.js
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const DOCUMENTATION_OPTIONS = {
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BUILDER: 'html',
diff --git a/main/api/eddymotion.data.dmri.html b/main/api/eddymotion.data.dmri.html
index 7daf10b6..2c9bbb9c 100644
--- a/main/api/eddymotion.data.dmri.html
+++ b/main/api/eddymotion.data.dmri.html
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diff --git a/main/api/eddymotion.data.html b/main/api/eddymotion.data.html
index d4e2b5b7..a3d0989b 100644
--- a/main/api/eddymotion.data.html
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@@ -6,7 +6,7 @@
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@@ -146,14 +146,14 @@
eddymotion.data.utils module - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.data.utils module - eddymotion 24.0.0.dev166+ga35b36a documentation
@@ -124,7 +124,7 @@
eddymotion.estimator module - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.estimator module - eddymotion 24.0.0.dev166+ga35b36a documentation
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eddymotion.model.base module - eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion.model.base module - eddymotion 24.0.0.dev166+ga35b36a documentation
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diff --git a/main/api/eddymotion.data.utils.html b/main/api/eddymotion.data.utils.html
index e07e534e..2eebcd1f 100644
--- a/main/api/eddymotion.data.utils.html
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diff --git a/main/api/eddymotion.estimator.html b/main/api/eddymotion.estimator.html
index 2f4b75e6..55951377 100644
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diff --git a/main/api/eddymotion.model.base.html b/main/api/eddymotion.model.base.html
index dd0ad419..673ec9eb 100644
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index 267f9c97..f4556d1a 100644
--- a/main/api/eddymotion.model.html
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@@ -6,7 +6,7 @@
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@@ -146,14 +146,14 @@
What’s new? - eddymotion 24.0.0.dev162+gc073fdf documentation
+ What’s new? - eddymotion 24.0.0.dev166+ga35b36a documentation
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index 821dfaae..7dd2d020 100644
--- a/main/changes.html
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eddymotion 24.0.0.dev162+gc073fdf documentation
+ eddymotion 24.0.0.dev166+ga35b36a documentation
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Installation - eddymotion 24.0.0.dev162+gc073fdf documentation
+ Installation - eddymotion 24.0.0.dev166+ga35b36a documentation
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<no title> - eddymotion 24.0.0.dev162+gc073fdf documentation
+ <no title> - eddymotion 24.0.0.dev166+ga35b36a documentation
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Python Module Index - eddymotion 24.0.0.dev162+gc073fdf documentation
+ Python Module Index - eddymotion 24.0.0.dev166+ga35b36a documentation
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Search - eddymotion 24.0.0.dev162+gc073fdf documentation
+ Search - eddymotion 24.0.0.dev166+ga35b36a documentation
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index 40d866e3..0966f40f 100644
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-
-
+
-
+-
-
+
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Eddymotion#
Estimating head-motion and deformations derived from eddy-currents in diffusion MRI data.
+
+
+
+
Retrospective estimation of head-motion between diffusion-weighted images (DWI) acquired within diffusion MRI (dMRI) experiments renders exceptionally challenging1 for datasets including high-diffusivity (or “high b”) images. These “high b” (b > 1000s/mm2) DWIs enable higher angular resolution, as compared to more traditional -diffusion tensor imaging (DTI) schemes. -UNDISTORT [1] (Using NonDistorted Images to Simulate a Template Of the Registration Target) -was the earliest method addressing this issue, by simulating a target DW image without motion -or distortion from a DTI (b=1000s/mm2) scan of the same subject. -Later, Andersson and Sotiropoulos [2] proposed a similar approach (widely available within the -FSL
+eddytool), by predicting the target DW image to be registered from the remainder of the -dMRI dataset and modeled with a Gaussian process. +diffusion tensor imaging (DTI) schemes.dMRI dataset and modeled with a Gaussian process. Besides the need for less data,
+(ii) replacing eddy’s general-purpose Gaussian process prediction with the SHORE [4] diffusion model.eddyhas the advantage of implicitly modeling distortions due to Eddy currents. -More recently, Cieslak et al. [3] integrated both approaches in SHORELine, by +More recently, Cieslak et al. [3] integrated both approaches in SHORELine, by (i) setting up a leave-one-out prediction framework as in eddy; and -(ii) replacing eddy’s general-purpose Gaussian process prediction with the SHORE [4] diffusion model.Eddymotion is an open implementation of eddy-current and head-motion correction that builds upon the work of
-eddyand SHORELine, while generalizing these methods to multiple acquisition schemes -(single-shell, multi-shell, and diffusion spectrum imaging) using diffusion models available with DIPY [5].
@@ -146,14 +146,14 @@
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index 5c0456bf..0dd8fb32 100644
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