diff --git a/docs/notebooks/dwi_gp_estimation.ipynb b/docs/notebooks/dwi_gp_estimation.ipynb index 777f288d..b4e01e00 100644 --- a/docs/notebooks/dwi_gp_estimation.ipynb +++ b/docs/notebooks/dwi_gp_estimation.ipynb @@ -132,7 +132,7 @@ ], "source": [ "affine = nib.load(dwi_fname).affine\n", - "plot_dwi(shell_data[..., dwi_vol_idx], affine, gradient=np.concatenate((np.squeeze(X_test), [1000])))" + "plot_dwi(shell_data[..., dwi_vol_idx], affine, gradient=np.concatenate((np.squeeze(X_test), [1000])), output_file=\"sherbrooke_3shell_b1k_data.svg\")" ] }, { @@ -221,9 +221,7 @@ "output_type": "display_data" } ], - "source": [ - "plot_dwi(dwi_sim, affine, gradient=np.concatenate((np.squeeze(X_test), [1000])))" - ] + "source": "plot_dwi(dwi_sim, affine, gradient=np.concatenate((np.squeeze(X_test), [1000])), output_file=\"sherbrooke_3shell_b1k_gp_noopt_pred.svg\")" }, { "cell_type": "code", @@ -452,7 +450,7 @@ "source": [ "plot_dwi(dwi_sim, affine, gradient=np.concatenate((np.squeeze(X_test), [1000])))\n", "plot_dwi(shell_data[..., dwi_vol_idx], affine, gradient=np.concatenate((np.squeeze(X_test), [1000])))\n", - "plot_dwi(dwi_sim2, affine, gradient=np.concatenate((np.squeeze(X_test), [1000])))" + "plot_dwi(dwi_sim2, affine, gradient=np.concatenate((np.squeeze(X_test), [1000])), output_file=\"sherbrooke_3shell_b1k_gp_opt_pred.svg\")" ] }, {