From b8f95580ba927104d076141c8253ea63d84d6a8d Mon Sep 17 00:00:00 2001 From: Javier Gonzalez-Castillo Date: Thu, 6 Jun 2024 11:21:03 -0400 Subject: [PATCH] Python environment files added --- envs/fc_introspection_2023_py310.yml | 231 ++++++++++++++++++++++++++ envs/fc_introspection_2023b_py310.yml | 228 +++++++++++++++++++++++++ 2 files changed, 459 insertions(+) create mode 100644 envs/fc_introspection_2023_py310.yml create mode 100644 envs/fc_introspection_2023b_py310.yml diff --git a/envs/fc_introspection_2023_py310.yml b/envs/fc_introspection_2023_py310.yml new file mode 100644 index 0000000..7c387d2 --- /dev/null +++ b/envs/fc_introspection_2023_py310.yml @@ -0,0 +1,231 @@ +name: fc_introspection_2023_py310 +channels: + - defaults + - conda-forge +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=2_kmp_llvm + - archspec=0.2.3=pyhd3eb1b0_0 + - asttokens=2.0.5=pyhd3eb1b0_0 + - attrs=23.1.0=py310h06a4308_0 + - backcall=0.2.0=pyhd3eb1b0_0 + - bctpy=0.6.1=pyhd8ed1ab_0 + - biopython=1.81=py310h2372a71_1 + - blas=2.106=openblas + - bleach=4.1.0=pyhd3eb1b0_0 + - bokeh=3.2.1=py310h2f386ee_0 + - boltons=23.0.0=py310h06a4308_0 + - bottleneck=1.3.5=py310ha9d4c09_0 + - brotli=1.0.9=h5eee18b_7 + - brotli-bin=1.0.9=h5eee18b_7 + - brotlipy=0.7.0=py310h7f8727e_1002 + - bzip2=1.0.8=h7b6447c_0 + - c-ares=1.19.1=h5eee18b_0 + - ca-certificates=2024.3.11=h06a4308_0 + - certifi=2024.6.2=py310h06a4308_0 + - cffi=1.15.1=py310h5eee18b_3 + - charset-normalizer=2.0.4=pyhd3eb1b0_0 + - colorcet=3.0.1=py310h06a4308_0 + - comm=0.1.2=py310h06a4308_0 + - conda=24.5.0=py310h06a4308_0 + - conda-libmamba-solver=24.1.0=pyhd3eb1b0_0 + - conda-package-handling=2.2.0=py310h06a4308_1 + - conda-package-streaming=0.9.0=py310h06a4308_0 + - contourpy=1.0.5=py310hdb19cb5_0 + - cryptography=41.0.3=py310hdda0065_0 + - cvxopt=1.3.0=py310hdd05ad1_4 + - cycler=0.11.0=pyhd3eb1b0_0 + - cython=3.0.0=py310h5eee18b_0 + - debugpy=1.6.7=py310h6a678d5_0 + - decorator=5.1.1=pyhd3eb1b0_0 + - distro=1.9.0=py310h06a4308_0 + - dsdp=5.8=h75fe3a5_0 + - exceptiongroup=1.0.4=py310h06a4308_0 + - executing=0.8.3=pyhd3eb1b0_0 + - fftw=3.3.10=nompi_hf0379b8_106 + - firefox=117.0.1=hd3aeb46_0 + - fmt=9.1.0=hdb19cb5_1 + - fonttools=4.25.0=pyhd3eb1b0_0 + - freetype=2.12.1=h4a9f257_0 + - frozendict=2.4.2=py310h5eee18b_0 + - geckodriver=0.33.0=hd2f7af9_0 + - giflib=5.2.1=h5eee18b_3 + - glpk=5.0=h445213a_0 + - gmp=6.2.1=h295c915_3 + - gsl=2.7.1=h6e86dc7_1 + - holoviews=1.17.1=py310h06a4308_0 + - hvplot=0.9.2=py310h06a4308_0 + - icu=73.1=h6a678d5_0 + - idna=3.4=py310h06a4308_0 + - ipykernel=6.25.0=py310h2f386ee_0 + - ipython=8.15.0=py310h06a4308_0 + - jedi=0.18.1=py310h06a4308_1 + - jinja2=3.1.2=py310h06a4308_0 + - joblib=1.2.0=py310h06a4308_0 + - jpeg=9e=h5eee18b_1 + - jsonpatch=1.33=py310h06a4308_1 + - jsonpointer=2.1=pyhd3eb1b0_0 + - jsonschema=4.19.2=py310h06a4308_0 + - jsonschema-specifications=2023.7.1=py310h06a4308_0 + - jupyter_client=8.1.0=py310h06a4308_0 + - jupyter_core=5.3.0=py310h06a4308_0 + - kiwisolver=1.4.4=py310h6a678d5_0 + - krb5=1.20.1=h143b758_1 + - lcms2=2.12=h3be6417_0 + - ld_impl_linux-64=2.38=h1181459_1 + - lerc=3.0=h295c915_0 + - libarchive=3.6.2=h6ac8c49_2 + - libblas=3.9.0=6_openblas + - libbrotlicommon=1.0.9=h5eee18b_7 + - libbrotlidec=1.0.9=h5eee18b_7 + - libbrotlienc=1.0.9=h5eee18b_7 + - libcblas=3.9.0=6_openblas + - libcurl=8.7.1=h251f7ec_0 + - libdeflate=1.17=h5eee18b_0 + - libedit=3.1.20230828=h5eee18b_0 + - libev=4.33=h7f8727e_1 + - libffi=3.4.4=h6a678d5_0 + - libgcc-ng=13.2.0=h807b86a_0 + - libgfortran-ng=11.2.0=h00389a5_1 + - libgfortran5=11.2.0=h1234567_1 + - liblapack=3.9.0=6_openblas + - liblapacke=3.9.0=6_openblas + - libllvm14=14.0.6=hdb19cb5_3 + - libmamba=1.5.8=hfe524e5_2 + - libmambapy=1.5.8=py310h2dafd23_2 + - libnghttp2=1.57.0=h2d74bed_0 + - libopenblas=0.3.12=pthreads_h4812303_1 + - libpng=1.6.39=h5eee18b_0 + - libsodium=1.0.18=h7b6447c_0 + - libsolv=0.7.24=he621ea3_1 + - libssh2=1.11.0=h251f7ec_0 + - libstdcxx-ng=13.2.0=h7e041cc_0 + - libtiff=4.5.1=h6a678d5_0 + - libuuid=1.41.5=h5eee18b_0 + - 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palettable=3.3.0=pyhd3eb1b0_0 + - panel=1.2.2=py310h06a4308_0 + - param=1.13.0=py310h06a4308_0 + - parso=0.8.3=pyhd3eb1b0_0 + - pcre2=10.42=hebb0a14_1 + - pexpect=4.8.0=pyhd3eb1b0_3 + - pickleshare=0.7.5=pyhd3eb1b0_1003 + - pillow=9.4.0=py310h6a678d5_0 + - pip=23.2.1=py310h06a4308_0 + - platformdirs=3.10.0=py310h06a4308_0 + - plotly=5.9.0=py310h06a4308_0 + - pluggy=1.0.0=py310h06a4308_1 + - prompt-toolkit=3.0.36=py310h06a4308_0 + - psutil=5.9.0=py310h5eee18b_0 + - ptyprocess=0.7.0=pyhd3eb1b0_2 + - pure_eval=0.2.2=pyhd3eb1b0_0 + - pybind11-abi=4=hd8ed1ab_3 + - pycirclize=1.1.0=pyhd8ed1ab_0 + - pycosat=0.6.6=py310h5eee18b_1 + - pycparser=2.21=pyhd3eb1b0_0 + - pyct=0.5.0=py310h06a4308_0 + - pyflakes=3.0.1=py310h06a4308_0 + - pygments=2.15.1=py310h06a4308_1 + - pyopenssl=23.2.0=py310h06a4308_0 + - pyparsing=3.0.9=py310h06a4308_0 + - pysocks=1.7.1=py310h06a4308_0 + - python=3.10.13=h955ad1f_0 + - python-dateutil=2.8.2=pyhd3eb1b0_0 + - python-fastjsonschema=2.16.2=py310h06a4308_0 + - python_abi=3.10=2_cp310 + - pytz=2022.7=py310h06a4308_0 + - pyviz_comms=2.3.0=py310h06a4308_0 + - pyyaml=6.0=py310h5eee18b_1 + - pyzmq=25.1.0=py310h6a678d5_0 + - quadprog=0.1.11=py310hbf28c38_1 + - readline=8.2=h5eee18b_0 + - referencing=0.30.2=py310h06a4308_0 + - reproc=14.2.4=h6a678d5_2 + - reproc-cpp=14.2.4=h6a678d5_2 + - requests=2.31.0=py310h06a4308_0 + - rpds-py=0.10.6=py310hb02cf49_0 + - ruamel.yaml=0.17.21=py310h5eee18b_0 + - ruamel.yaml.clib=0.2.8=py310h2372a71_0 + - scikit-learn=1.2.2=py310h6a678d5_0 + - scikit-posthocs=0.7.0=pyhd8ed1ab_0 + - scipy=1.9.3=py310hdfbd76f_2 + - selenium=3.141.0=py310h7f8727e_1000 + - setuptools=68.0.0=py310h06a4308_0 + - six=1.16.0=pyhd3eb1b0_1 + - sqlite=3.41.2=h5eee18b_0 + - stack_data=0.2.0=pyhd3eb1b0_0 + - statsmodels=0.14.0=py310ha9d4c09_0 + - suitesparse=5.10.1=h17784d6_1 + - tbb=2021.8.0=hdb19cb5_0 + - tenacity=8.2.2=py310h06a4308_0 + - threadpoolctl=2.2.0=pyh0d69192_0 + - tk=8.6.12=h1ccaba5_0 + - tornado=6.3.2=py310h5eee18b_0 + - tqdm=4.65.0=py310h2f386ee_0 + - traitlets=5.7.1=py310h06a4308_0 + - truststore=0.8.0=py310h06a4308_0 + - typing_extensions=4.7.1=py310h06a4308_0 + - uc-micro-py=1.0.1=py310h06a4308_0 + - urllib3=1.26.16=py310h06a4308_0 + - wcwidth=0.2.5=pyhd3eb1b0_0 + - webencodings=0.5.1=py310h06a4308_1 + - wheel=0.38.4=py310h06a4308_0 + - wordcloud=1.8.2.2=py310h5764c6d_1 + - xarray=2023.6.0=py310h06a4308_0 + - xyzservices=2022.9.0=py310h06a4308_1 + - xz=5.4.2=h5eee18b_0 + - yaml=0.2.5=h7b6447c_0 + - yaml-cpp=0.8.0=h6a678d5_1 + - zeromq=4.3.4=h2531618_0 + - zlib=1.2.13=h5eee18b_0 + - zstandard=0.22.0=py310h2c38b39_0 + - zstd=1.5.5=hc292b87_0 + - pip: + - cognitiveatlas==0.1.9 + - future==0.18.3 + - fuzzywuzzy==0.18.0 + - indexed-gzip==1.7.1 + - mpmath==1.3.0 + - nilearn==0.10.1 + - nimare==0.2.1 + - numpy==1.23.5 + - pandas==2.2.2 + - patsy==0.5.3 + - pyclustering==0.10.1.2 + - pymare==0.0.4rc2 + - seaborn==0.13.2 + - sfim-lib==0.0.10 + - sparse==0.14.0 + - sympy==1.11.1 + - tzdata==2024.1 + - wrapt==1.15.0 diff --git a/envs/fc_introspection_2023b_py310.yml b/envs/fc_introspection_2023b_py310.yml new file mode 100644 index 0000000..35a5110 --- /dev/null +++ b/envs/fc_introspection_2023b_py310.yml @@ -0,0 +1,228 @@ +name: fc_introspection_2023b_py310 +channels: + - defaults + - conda-forge +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=2_gnu + - archspec=0.2.3=pyhd3eb1b0_0 + - asttokens=2.0.5=pyhd3eb1b0_0 + - backcall=0.2.0=pyhd3eb1b0_0 + - biopython=1.81=py310h2372a71_1 + - blas=1.0=mkl + - bleach=4.1.0=pyhd3eb1b0_0 + - bokeh=3.2.1=py310h2f386ee_0 + - boltons=23.0.0=py310h06a4308_0 + - bottleneck=1.3.5=py310ha9d4c09_0 + - brotli=1.0.9=h5eee18b_7 + - brotli-bin=1.0.9=h5eee18b_7 + - brotlipy=0.7.0=py310h7f8727e_1002 + - bzip2=1.0.8=h7b6447c_0 + - c-ares=1.19.1=h5eee18b_0 + - ca-certificates=2024.3.11=h06a4308_0 + - certifi=2024.2.2=py310h06a4308_0 + - cffi=1.15.1=py310h5eee18b_3 + - charset-normalizer=2.0.4=pyhd3eb1b0_0 + - click=8.1.7=py310h06a4308_0 + - cloudpickle=2.2.1=py310h06a4308_0 + - colorcet=3.0.1=py310h06a4308_0 + - comm=0.1.2=py310h06a4308_0 + - conda=24.5.0=py310h06a4308_0 + - conda-libmamba-solver=24.1.0=pyhd3eb1b0_0 + - conda-package-handling=2.2.0=py310h06a4308_1 + - conda-package-streaming=0.9.0=py310h06a4308_0 + - 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liblapack=3.9.0=5_h92ddd45_netlib + - libllvm14=14.0.6=hdb19cb5_3 + - libmamba=1.5.8=hfe524e5_2 + - libmambapy=1.5.8=py310h2dafd23_2 + - libnghttp2=1.57.0=h2d74bed_0 + - libpng=1.6.39=h5eee18b_0 + - libsodium=1.0.18=h7b6447c_0 + - libsolv=0.7.24=he621ea3_1 + - libssh2=1.11.0=h251f7ec_0 + - libstdcxx-ng=13.2.0=h7e041cc_2 + - libtiff=4.5.1=h6a678d5_0 + - libuuid=1.41.5=h5eee18b_0 + - libwebp=1.3.2=h11a3e52_0 + - libwebp-base=1.3.2=h5eee18b_0 + - libxml2=2.10.4=hf1b16e4_1 + - libxslt=1.1.37=h5eee18b_1 + - linkify-it-py=2.0.0=py310h06a4308_0 + - llvmlite=0.42.0=py310h6a678d5_0 + - locket=1.0.0=py310h06a4308_0 + - lxml=4.9.3=py310hdbbb534_0 + - lz4-c=1.9.4=h6a678d5_0 + - markdown=3.4.1=py310h06a4308_0 + - markdown-it-py=2.2.0=py310h06a4308_1 + - markupsafe=2.1.1=py310h7f8727e_0 + - matplotlib-base=3.7.2=py310h1128e8f_0 + - matplotlib-inline=0.1.6=py310h06a4308_0 + - mdit-py-plugins=0.3.0=py310h06a4308_0 + - mdurl=0.1.0=py310h06a4308_0 + - menuinst=2.1.0=py310h06a4308_0 + - metis=5.1.0=hf484d3e_4 + - mkl=2023.1.0=h213fc3f_46343 + - mkl-service=2.4.0=py310h5eee18b_1 + - mkl_fft=1.3.8=py310h5eee18b_0 + - mkl_random=1.2.4=py310hdb19cb5_0 + - mpfr=4.2.1=h9458935_0 + - multipledispatch=0.6.0=py310h06a4308_0 + - munkres=1.1.4=py_0 + - ncurses=6.4=h6a678d5_0 + - nest-asyncio=1.5.6=py310h06a4308_0 + - networkx=3.1=py310h06a4308_0 + - nibabel=5.1.0=py310hff52083_3 + - nilearn=0.10.2=pyhd8ed1ab_0 + - numba=0.59.1=py310h7dc5dd1_0 + - numexpr=2.8.7=py310h85018f9_0 + - numpy=1.26.0=py310h5f9d8c6_0 + - numpy-base=1.26.0=py310hb5e798b_0 + - nxviz=0.7.4=py310hff52083_1 + - openjpeg=2.4.0=h3ad879b_0 + - openpyxl=3.1.2=py310h5eee18b_0 + - openssl=3.0.13=h7f8727e_2 + - packaging=23.1=py310h06a4308_0 + - palettable=3.3.0=pyhd3eb1b0_0 + - pandas=2.1.1=py310h1128e8f_0 + - panel=1.2.3=py310h06a4308_0 + - param=1.13.0=py310h06a4308_0 + - parso=0.8.3=pyhd3eb1b0_0 + - partd=1.4.1=py310h06a4308_0 + - pcre2=10.42=hebb0a14_1 + - pexpect=4.8.0=pyhd3eb1b0_3 + - pickleshare=0.7.5=pyhd3eb1b0_1003 + - pillow=10.0.1=py310ha6cbd5a_0 + - pip=23.3=py310h06a4308_0 + - platformdirs=3.10.0=py310h06a4308_0 + - plotly=5.9.0=py310h06a4308_0 + - pluggy=1.0.0=py310h06a4308_1 + - prompt-toolkit=3.0.36=py310h06a4308_0 + - psutil=5.9.0=py310h5eee18b_0 + - ptyprocess=0.7.0=pyhd3eb1b0_2 + - pure_eval=0.2.2=pyhd3eb1b0_0 + - pybind11-abi=4=hd8ed1ab_3 + - pycirclize=1.1.0=pyhd8ed1ab_0 + - pyclustering=0.10.1.2=py310hd41b1e2_3 + - pycosat=0.6.6=py310h5eee18b_1 + - pycparser=2.21=pyhd3eb1b0_0 + - pyct=0.5.0=py310h06a4308_0 + - pygments=2.15.1=py310h06a4308_1 + - pyopenssl=23.2.0=py310h06a4308_0 + - pyparsing=3.0.9=py310h06a4308_0 + - pysocks=1.7.1=py310h06a4308_0 + - python=3.10.13=h955ad1f_0 + - python-chromedriver-binary=124.0.6358.0.0=py310hff52083_0 + - python-dateutil=2.8.2=pyhd3eb1b0_0 + - python-tzdata=2023.3=pyhd3eb1b0_0 + - python_abi=3.10=2_cp310 + - pytz=2023.3.post1=py310h06a4308_0 + - pyviz_comms=2.3.0=py310h06a4308_0 + - pyyaml=6.0=py310h5eee18b_1 + - pyzmq=25.1.0=py310h6a678d5_0 + - quadprog=0.1.12=py310hd41b1e2_1 + - readline=8.2=h5eee18b_0 + - reproc=14.2.4=h6a678d5_2 + - reproc-cpp=14.2.4=h6a678d5_2 + - requests=2.31.0=py310h06a4308_0 + - ruamel.yaml=0.17.21=py310h5eee18b_0 + - ruamel.yaml.clib=0.2.8=py310h2372a71_0 + - scikit-learn=1.3.0=py310h1128e8f_0 + - scipy=1.11.3=py310h5f9d8c6_0 + - seaborn=0.12.2=py310h06a4308_0 + - selenium=3.141.0=py310h7f8727e_1000 + - setuptools=68.0.0=py310h06a4308_0 + - six=1.16.0=pyhd3eb1b0_1 + - sqlite=3.41.2=h5eee18b_0 + - stack_data=0.2.0=pyhd3eb1b0_0 + - suitesparse=5.10.1=h9e50725_1 + - tbb=2021.8.0=hdb19cb5_0 + - tenacity=8.2.2=py310h06a4308_0 + - threadpoolctl=2.2.0=pyh0d69192_0 + - tk=8.6.12=h1ccaba5_0 + - toolz=0.12.0=py310h06a4308_0 + - tornado=6.3.3=py310h5eee18b_0 + - tqdm=4.65.0=py310h2f386ee_0 + - traitlets=5.7.1=py310h06a4308_0 + - truststore=0.8.0=py310h06a4308_0 + - typing_extensions=4.7.1=py310h06a4308_0 + - tzdata=2023c=h04d1e81_0 + - uc-micro-py=1.0.1=py310h06a4308_0 + - urllib3=1.26.16=py310h06a4308_0 + - wcwidth=0.2.5=pyhd3eb1b0_0 + - webencodings=0.5.1=py310h06a4308_1 + - wheel=0.41.2=py310h06a4308_0 + - wordcloud=1.9.3=py310h5eee18b_0 + - xarray=2023.6.0=py310h06a4308_0 + - xyzservices=2022.9.0=py310h06a4308_1 + - xz=5.4.2=h5eee18b_0 + - yaml=0.2.5=h7b6447c_0 + - yaml-cpp=0.8.0=h6a678d5_1 + - zeromq=4.3.4=h2531618_0 + - zipp=3.17.0=py310h06a4308_0 + - zlib=1.2.13=h5eee18b_0 + - zstandard=0.22.0=py310h2c38b39_0 + - zstd=1.5.5=hc292b87_0 + - pip: + - sfim-lib==0.0.10