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ohbm_tables.tex
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\documentclass{article}
\usepackage{graphicx} % Required for inserting images
\usepackage{booktabs}
\usepackage{tabularx}
\usepackage{longtable}
\usepackage{geometry}
\usepackage{ltablex}
\geometry{
a4paper,
total={170mm,257mm},
left=20mm,
top=20mm,
}
\title{ohbm_tables}
\author{Jessica Dafflon}
\date{November 2023}
\begin{document}
%\maketitle
\section{Human Connectome Project (HCP)}
List of phenotypes used from the HCP dataset
\begin{longtable}{ll}
%\centering
%\label{tab:phenotypes-hcp}
%\begin{tabular}{ll}
\toprule
\textbf{Variable} & \textbf{Description}\\
\midrule
\multicolumn{2}{l}{Alertness}\\
\midrule
MMSE\_Score & Mini Mental Status Exam Total Score\\
PSQI\_Score & Pittsburgh Sleep Questionnaire Total Score\\
\midrule
\multicolumn{2}{l}{Cognition (Delay Discounting)}\\
\midrule
DDisc\_AUC\_200 & Area Under the Curve for Discounting of \$200\\
DDisc\_AUC\_40K & Area Under the Curve for Discounting of \$40,000 \\
\midrule
\multicolumn{2}{l}{Cognition (NIH Toolbox)}\\
\midrule
CardSort\_Unadj & Dimensional Change Card Sort Test: Unadjusted Scale Score\\
CogCrystalComp\_AgeAdj & Cognition Crystallized Composite: Age Adjusted Scale Score\\
CogEarlyComp\_AgeAdj & Cognition Early Childhood Composite: Age Adjusted Scale Score\\
CogFluidComp\_AgeAdj & Cognition Fluid Composite: Age Adjusted Scale Score\\
CogTotalComp\_AgeAdj & Cognition Total Composite Score: Age Adjusted Scale Score\\
Flanker\_Unadj & Flanker Inhibitory Control and Attention Test: Unadjusted Scale Score\\
ListSort\_Unadj & List Sorting Working Memory Test: Unadjusted Scale Score\\
PicSeq\_AgeAdj & Picture Sequence Memory Test: Age-Adjusted Scale Score\\
PicVocab\_AgeAdj & Picture Vocabulary Test: Age-Adjusted Scale Score\\
ProcSpeed\_AgeAdj & Pattern Comparison Processing Speed Test: Age-Adjusted Scale Score\\
ReadEng\_Unadj & Oral Reading Recognition Test: Unadjusted Scale Score\\
\midrule
\multicolumn{2}{l}{Cognition (Penn Tests)}\\
\midrule
IWRD\_TOT & Word Memory: Total Number of Correct Responses\\
PMAT24\_A\_CR & Progressive Matrices\: Number of Correct Responses\\
SCPT\_SEN & Short Continuous Performance Test\: Sensitivity\\
SCPT\_SPEC & Short Continuous Performance Test\: Specificity\\
VSPLOT\_TC & Variable Short Penn Line Orientation Test: Total Number Correct \\
\midrule
\multicolumn{2}{l}{Emotion (NIH Toolbox)}\\
\midrule
AngAffect\_Unadj & Anger-Affect Survey: Unadjusted Scale Score\\
AngAggr\_Unadj & Anger-Physical Aggression Survey: Unadjusted Scale Score\\
AngHostil\_Unadj & Anger-Hostility Survey: Unadjusted Scale Score\\
FearAffect\_Unadj & Fear-Affect Survey: Unadjusted Scale Score\\
FearSomat\_Unadj & Fear-Somatic Arousal Survey: Unadjusted Scale Score \\
EmotSupp\_Unadj & Emotional Support Survey: Unadjusted Scale Score\\
Friendship\_Unadj & Friendship Survey: Unadjusted Scale Score\\
InstruSupp\_Unadj & Instrumental Support Survey: Unadjusted Scale Score \\
LifeSatisf\_Unadj & General Life Satisfaction Survey: Unadjusted Scale Score\\
Loneliness\_Unadj & Loneliness Survey: Unadjusted Scale Score\\
MeanPurp\_Unadj & Meaning and Purpose Survey\: Unadjusted Scale Score\\
PercHostil\_Unadj & Perceived Hostility Survey: Unadjusted Scale Score\\
PercReject\_Unadj & Perceived Rejection Survey: Unadjusted Scale Score\\
PercStress\_Unadj & Perceived Stress Survey: Unadjusted Scale Score\\
PosAffect\_Unadj & Positive Affect Survey: Unadjusted Scale Score\\
Sadness\_Unadj & Sadness Survey: Unadjusted Scale Score\\
SelfEff\_Unadj & Self-Efficacy Survey: Unadjusted Scale Score\\
\midrule
\multicolumn{2}{l}{Emotion (Penn Emotion Recognition Test)}\\
\midrule
ER40ANG & Number of Correct Anger Identifications\\
ER40FEAR & Number of Correct Fear Identifications\\
ER40NOE & Number of Correct Neutral Identifications\\
ER40SAD & Number of Correct Sad Identifications\\
ER40\_CR & Number of Correct Responses\\
ER40\_CRT & Correct Responses Median Response Time (ms)\\
\midrule
\\ % need for new page
\\ % need for new page
\midrule
\multicolumn{2}{l}{In-Scanner Task Performance}\\
\midrule
Emotion\_Task\_Face\_Acc & Accuracy \% during FACE blocks in EMOTION task\\
Relational\_Task\_Acc & Average accuracy \% during RELATIONAL task\\
Social\_Task\_Perc\_Random & Overall \% of stimuli that the subject rated as 'random' in SOCIAL task\\
Social\_Task\_Perc\_TOM & Overall \% of stimuli that received a 'social' rating in SOCIAL task\\
WM\_Task\_Acc & Accuracy across all conditions in working memory task\\
\midrule
\multicolumn{2}{l}{Language}\\
\midrule
Language\_Task\_Math\_Avg & Language Task MATH difficulty level\\
Language\_Task\_Story\_Avg & Language Task STORY difficulty level\\
\midrule
\multicolumn{2}{l}{Motor (NIH Toolbox)}\\
\midrule
Dexterity\_Unadj & 9-hole Pegboard Dexterity Test: Unadjusted Scale Score\\
Endurance\_Unadj & 2-minute Walk Endurance Test: Unadjusted Scale Score \\
GaitSpeed\_Comp & 4-Meter Walk Gait Speed Test: Computed Score\\
Strength\_Unadj & Grip Strength Test: Unadjusted Scale Score\\
\midrule
\multicolumn{2}{l}{Personality (Neuroticism/Extroversion/Openness Five Factor Inventory)}\\
\midrule
NEOFAC\_A & Agreeableness\\
NEOFAC\_C & Conscientiousness\\
NEOFAC\_E & Extraversion\\
NEOFAC\_N & Neuroticism\\
NEOFAC\_O & Openness to Experience\\
\midrule
\multicolumn{2}{l}{Psychiatric and Life Function (Achenbach Adult Self-Report)}\\
\midrule
ASR\_Aggr\_T & Aggressive Behavior Gender and Age Adjusted T-score\\
ASR\_Anxd\_Pct & Anxious/Depressed Gender and Age Adjusted T-score\\
ASR\_Attn\_T & Attention Problems Gender and Age Adjusted T-score\\
ASR\_Extn\_T & Externalizing Gender and Age Adjusted T-score\\
ASR\_Intn\_T & Internalizing Gender and Age Adjusted T-score\\
ASR\_Intr\_T & Intrusive Gender and Age Adjusted T-score\\
ASR\_Rule\_T & Rule Breaking Behavior Gender and Age Adjusted T-score\\
ASR\_Soma\_T & Somatic Complaints Gender and Age Adjusted T-score\\
ASR\_TAO\_Sum & Sum of Thought, Attention, and Other Problems Raw Score\\
ASR\_Thot\_T & Thought Problems Gender and Age Adjusted T-score\\
ASR\_Totp\_T & Total Problems Gender and Age Adjusted T-score \\
ASR\_Witd\_T & Withdrawn Gender and Age Adjusted T-score\\
\midrule
\multicolumn{2}{l}{Sensory}\\
\midrule
Mars\_Final & Mars Final Contrast Sensitivity Score\\
Odor\_Unadj & NIH Toolbox Odor Identification Age 3+ Unadjusted Scale Score\\
PainInterf\_Tscore & NIH Toolbox Pain Interference Survey Age 18+: T-score \\
Taste\_Unadj & NIH Toolbox Regional Taste Intensity Age 12+ Unadjusted Scale Score \\
\bottomrule
%\end{tabular}
\end{longtable}
\label{tab:phenotypes-hcp}
\newpage
\section{Philadelphia Neurodevelopmental Cohort (PNC)}
List of phenotypes used from the PNC dataset
\begin{longtable}{ll}
%\label{tab:phenotypes-pnc}
%\begin{table}[!ht]
%\begin{tabularx}{\textwidth}{lX}
\toprule
\textbf{Variable} & \textbf{Description}\\
\midrule
\multicolumn{2}{l}{Letter N-Back (LNB) task}\\
\midrule
LNB\_MCR & Number of Correct Responses to for 1-Back and 2-Back Trials\\
LNB\_MRTC & Mean of the Median Response Time for Correct Responses for 1-Back (TP)\\
& and for 2-Back (TP) Trials\\
\midrule
\multicolumn{2}{l}{Motor Praxis (MP) task}\\
\midrule
MP\_MP2RTCR & Median Response Time for Correct Mouse Click Responses\\
\midrule
\multicolumn{2}{l}{Penn Age Differentiation Test (PADT)}\\
\midrule
PADT\_A & Total Correct Responses for All Test Trials, by genus\\
PADT\_PC & Percent Correct Responses for All Test Trials, by genus\\
PADT\_SAME\_PC & Percent Correct Responses to Test Trials with No Age Difference, by genus\\
PADT\_T & Median Response Time for All Test Trials, by genus\\
\midrule
\multicolumn{2}{l}{Penn Conditional Exclusion Test (PCET)}\\
\midrule
PCET\_ACC2 & Calculated Accuracy Measure\\
PCET\_CAT & Number of Categories Achieved\\
\midrule
\multicolumn{2}{l}{Penn Continuous Performance Test (PCPT)}\\
\midrule
PCPT\_T\_FP & Total of Incorrect Responses to Number Trials (TP) and Letter Trials (FP)\\
PCPT\_T\_FPRT & Median Response Time for Incorrect Responses to Number Trials (TP)\\
& and Letter Trials (TP)\\
PCPT\_T\_TP & Total of Correct Responses to Number Trials (TP) and Letter Trials (TP)\\
PCPT\_T\_TPRT & Median Response Time for Correct Responses to Number Trials\\
& (TP) and Letter Trials (TP)\\
\midrule
\multicolumn{2}{l}{Penn Emotion Differentiation Test (PEDT)}\\
\midrule
PEDT\_A & Total Correct Responses for All Test Trials, by genus\\
PEDT\_ANG\_PC & Percent of Correct Responses for Anger Trials, by genus\\
PEDT\_FEAR\_PC & Percent of Correct Responses for Fear Trials, by genus\\
PEDT\_HAP\_PC & Percent of Correct Responses for Happy Trials, by genus\\
PEDT\_PC & Percent of Correct Responses for All Test Trials, by genus\\
PEDT\_SAD\_PC & Percent of Correct Responses for Sad Trials, by genus\\
PEDT\_SAME\_PC & Percent Correct Responses to Test Trials with Neutral Difference, by genus\\
PEDT\_T & Median Response Time for All Test Trials, by genus\\
\midrule
\multicolumn{2}{l}{Penn Emotion Identification Test (PEIT)}\\
\midrule
PEIT\_CR & Total Correct Responses for All Test Trials, by genus\\
PEIT\_CRT & Median Response Time for Total Correct Test Trial Responses, by genus\\
\midrule
\multicolumn{2}{l}{Penn Face Memory task (PFMT)}\\
\midrule
PFMT\_IFAC\_RTC & Median Response Time for Total Correct Test Trial Responses\\
PFMT\_IFAC\_TOT & Total Correct Responses for All Test Trials\\
\midrule
\multicolumn{2}{l}{Penn Line Orientation Test (PLOT)}\\
\midrule
PLOT\_PC & Percent Correct Responses for All Test Trials, by genus\\
PLOT\_TC & Total Correct Responses for All Test Trials, by genus\\
PLOT\_TCRT & Median Response Time for Correct Trials, by genus\\
\midrule
\multicolumn{2}{l}{Primary Mental Abilities Test (PMAT)}\\
\midrule
PMAT\_CR & Total Correct Responses for All Test Trials, by genus\\
\midrule
\multicolumn{2}{l}{Penn Verbal Reasoning Test (PVRT)}\\
\midrule
PVRT\_CR & Total Correct Responses for All Test Trials, by genus\\
PVRT\_RTCR & Median Response Time for Correct Verbal Reasoning Responses, by genus\\
PVRT\_RTER & Median Response Time for Incorrect Verbal Reasoning Responses, by genus\\
\midrule
\\
\midrule % needed for new page
\multicolumn{2}{l}{Penn Word Memory task (PWMT)}\\
\midrule
PWMT\_KIWRD\_RTC & Median Response Time for Total Correct Test Trial Responses\\
PWMT\_KIWRD\_TOT & Total Correct Responses for All Test Trials\\
\midrule
\multicolumn{2}{l}{Visual Object Learning Test (VOLT)}\\
\midrule
VOLT\_SVT & Total Correct Responses for All Test Trial\\
VOLT\_SVTCRT & Median Response Time for Total Correct Responses\\
VOLT\_SVTIRT & Median Response Time for Incorrect Responses\\
\midrule
\multicolumn{2}{l}{Wide Range Achievement Test (WRAT)}\\
\midrule
WRAT\_CR\_RAW & Total Raw Score\\
WRAT\_CR\_STD & Total Standard Score\\
\bottomrule
%\end{longtable}
%\end{tabularx}
\end{longtable}
\end{document}