From 056a88fab221af6f6b10d75f31a4fe2d4141ad58 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:24:03 -0500 Subject: [PATCH 1/8] Update README.md --- README.md | 7 ------- 1 file changed, 7 deletions(-) diff --git a/README.md b/README.md index b66cdaf..0336c67 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,3 @@ -## What is this? -In this repository is the code associated with the following paper: - -**Brake N, Duc F, Rokos A, Arseneau F, Shahiri S, Khadra A, and Plourde G. (2023). "A neurophysiological basis for aperiodic EEG and the background spectral trend.".** - -This repository includes functions to generate all figures from the manuscript (EEG_modelling/manuscript_figures), as well as the original code used to simulate the model (EEG_modelling/simulations). To reference this code, please cite the article mentioned above. - ## Executing code in this repository To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990.v2. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. From a0a86ce6b4331ebdebee74cf4bf255cd716e8c40 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:37:12 -0500 Subject: [PATCH 2/8] Update README.md --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 0336c67..c257560 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,5 @@ +https://zenodo.org/doi/10.5281/zenodo.10359817 + ## Executing code in this repository To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990.v2. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. From 3193a13addba0f344bb30115fb0317bc54145223 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:37:22 -0500 Subject: [PATCH 3/8] Update README.md --- README.md | 2 -- 1 file changed, 2 deletions(-) diff --git a/README.md b/README.md index c257560..0336c67 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,3 @@ -https://zenodo.org/doi/10.5281/zenodo.10359817 - ## Executing code in this repository To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990.v2. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. From e9f534624b2f8fbef67d0cdb0cf40e8cd75d6c82 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:44:33 -0500 Subject: [PATCH 4/8] Update README.md --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 0336c67..a2c7509 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,5 @@ +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) + ## Executing code in this repository To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990.v2. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. From 7961c939bf31ea94817c21a2ae00e71b2f91a72b Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:44:55 -0500 Subject: [PATCH 5/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index a2c7509..88a3cce 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) +[![Code DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) ## Executing code in this repository From 34c09be58fe71f495b7ab7ebb0022b979499ab97 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:45:07 -0500 Subject: [PATCH 6/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 88a3cce..83d1898 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -[![Code DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) +Code [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) ## Executing code in this repository From 78ab06b0c69a8719994126a634c364a07a3bc8ee Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Mon, 11 Dec 2023 16:45:24 -0500 Subject: [PATCH 7/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 83d1898..a2c7509 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -Code [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10359818.svg)](https://doi.org/10.5281/zenodo.10359818) ## Executing code in this repository From 00ceccfd61ce43b728e5d2e80fdb96fb03b44ae7 Mon Sep 17 00:00:00 2001 From: Niklas Brake Date: Tue, 19 Dec 2023 16:17:03 -0500 Subject: [PATCH 8/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index a2c7509..fbf2024 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ ## Executing code in this repository -To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990.v2. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. +To reproduce the figures, data needs to be downloaded from https://doi.org/10.6084/m9.figshare.24777990. Once this data is downloaded, line 16 of EEG_modelling/model/network_simulation_beluga.m needs to be updated, such that the variable resourceFolder points to the data folder. If you wish to simulate dipoles, the script EEG_modelling/simulation_examples/example_embedding.m outlines how the model can be simulated. To run this script, the file EEG_modelling/model/compute_tiling_correlation.c needs to be compiled, which can be accomplished with the following command: ````