From f05fe1b8bc519caa2fa28d5653f55d28bcb75d9e Mon Sep 17 00:00:00 2001 From: Niema Moshiri Date: Fri, 8 Mar 2024 16:33:55 -0800 Subject: [PATCH] Added CI test for 'Single Introduction' plugin for 'Viral Phylogeny (Seeds) --- .tests/viral_phylogeny_seeds_Single-Introduction.json | 1 + 1 file changed, 1 insertion(+) create mode 100755 .tests/viral_phylogeny_seeds_Single-Introduction.json diff --git a/.tests/viral_phylogeny_seeds_Single-Introduction.json b/.tests/viral_phylogeny_seeds_Single-Introduction.json new file mode 100755 index 0000000..f08e900 --- /dev/null +++ b/.tests/viral_phylogeny_seeds_Single-Introduction.json @@ -0,0 +1 @@ +{"Contact Network":{"model":"Barabasi-Albert (BA)","param":{"n":100,"m":1}},"Transmission Network":{"model":"Susceptible-Infected (SI)","param":{"duration":200,"N_S":99,"N_I":1,"R_S-I":0,"R_S-I_I":0.01}},"Sample Times":{"model":"End","param":{"sampled_states":"I","num_samples":10}},"Viral Phylogeny (Transmissions)":{"model":"Constant Effective Population Size","param":{"N":1}},"Viral Phylogeny (Seeds)":{"model":"Single Introduction","param":{}},"Mutation Rates":{"model":"Constant","param":{"rate":0.01}},"Ancestral Sequence":{"model":"Base Probabilities","param":{"k":2640,"p_A":0.178159,"p_C":0.263322,"p_G":0.233821,"p_T":0.324698}},"Sequence Evolution":{"model":"General Time-Reversible (GTR) + Gamma","param":{"p_A":0.178159,"p_C":0.263322,"p_G":0.233821,"p_T":0.324698,"r_A-C":6.461945,"r_A-G":16.399738,"r_A-T":3.197035,"r_C-G":0.750543,"r_C-T":14.629816,"r_G-T":1,"alpha":0.1,"num_cats":0,"prop_invariable":0}}} \ No newline at end of file