diff --git a/global.json b/global.json
index b7a1681..1fecfef 100644
--- a/global.json
+++ b/global.json
@@ -1,5 +1,5 @@
{
- "VERSION": "1.0.2",
+ "VERSION": "1.0.3",
"CONFIG_KEYS": ["Contact Network", "Transmission Network", "Sample Times", "Viral Phylogeny (Transmissions)", "Viral Phylogeny (Seeds)", "Mutation Rates", "Ancestral Sequence", "Sequence Evolution"],
"DESC": {
"Contact Network": "The Contact Network graph model describes all social interactions:
- Nodes represent individuals in the population
- Edges represent all interactions across which the pathogen can transmit
- Currently, FAVITES-Lite only supports static (i.e., unchanging) contact networks
",
diff --git a/plugins/mutation_rates/common_treeswift.py b/plugins/mutation_rates/common_treeswift.py
index e22a179..d0ac6c5 100644
--- a/plugins/mutation_rates/common_treeswift.py
+++ b/plugins/mutation_rates/common_treeswift.py
@@ -216,7 +216,6 @@ def treeswift_truncnorm(params, out_fn, config, GLOBAL, verbose=True):
tree = read_tree_newick(out_fn['viral_phylogeny_time'])
nodes = [node for node in tree.traverse_preorder() if node.edge_length is not None]
rates = truncnorm_rvs(loc=mu, scale=sigma, a_min=a_min, b_max=b_max, size=len(nodes))
- print('\n'.join(str(r) for r in rates)); exit() # TODO
for i in range(len(nodes)):
nodes[i].edge_length *= rates[i]
tree.write_tree_newick(out_fn['viral_phylogeny_mut'])