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Select presentations are available on SlideShare and FigShare

Semantic Phenotyping of Diseases

  1. Ramona Walls and Nicole Vasilevsky. “RDCA-DAP: Ontology Applications in Rare Epilepsies and Friedreich’s ataxia (FA)”, [Presentation] Rare and Orphan Disease Conference, Washington, DC, September 12, 2023.
  2. Leigh C Carmody, Michael Gargano, Nicole A Vasilevsky, Sabrina Toro, Lauren Chan, Hannah Blau, Xingmin A. Zhang, Monica C Munoz-Torres, Chris Mungall, Nicolas Matentzoglu, Melissa Haendel, Peter Robinson. “Medical Action Ontology (MAxO) development and tool implementation for the annotation of Rare Disease (RD)” [Presentation] Biocuration 2023, Padua, Italy, April 2023.
  3. Sabrina Toro, Kathleen R. Mullen, Nicolas Matentzoglu, Imke Tammen, Frank W. Nicholas, Halie M. Rando, Nicole A. Vasilevsky, Christopher J. Mungall and Melissa Haendel, “Harnessing veterinary data to drive precision medicine: Expanding the Mondo Disease Ontology and Creating the Vertebrate Breed Ontology”, [Poster Presentation] Biocuration 2023, Padua, Italy, April 2023
  4. Vasilevsky N. “Standardizing Rare Disease Data Collection: It Takes an (Ontology) Village”, [Keynote address]. 4th U.S. Semantic Technologies Symposium, East Lansing, MI, USA, September 29, 2022. https://doi.org/10.5281/zenodo.7125341
  5. Nicole Vasilevsky. “Using the Mondo Disease Ontology to Standardize Rare Disease Nomenclature”, FDA Office of Orphan Products Development, Virtual, September 21, 2022, https://zenodo.org/record/7102403#.Yyt_s-zML6M
  6. Sabrina Toro, Nicole Vasilevsky and Nico Matentzoglu. Using the Mondo Disease Ontology for disease data curation, [Co-organizer], Workshop at Curating the Clinical Genome Conference, June 08, 2022 
  7. “Comparative Veterinary Informatics Workshop”, Co-lead organizer, Aurora, CO, https://monarch-initiative.github.io/phenomics/pages/veterinary.html, May 23-24, 2022
  8. Nicole Vasilevsky, Sabrina Toro, Nico A. Matentzoglu, Dazhi Jiao, Nomi L. Harris, Melissa A. Haendel, Peter N. Robinson, Chris Mungall. "Mondo Disease Ontology: Building a Community-Based Disease Resource" [Conference session]. AMIA 2022 Informatics Summit, Chicago, IL,, USA., March 23, 2022
  9. "Mondo Clinical Reclassification Workshop Part 2", Co-organizer, https://mondo.monarchinitiative.org/pages/workshop/#november-2021, November 17th, 2021
  10. "uPheno Workshop", Biocuration 2021, Co-organizer, November 15, 2021
  11. Vasilevsky, NA, "The Mondo Disease Ontology." NHGRI Centers For Excellence In Genomic Science, Virtual, figshare. https://doi.org/10.6084/m9.figshare.16821250.v1, October 15, 2021
  12. Nicole Vasilevsky. "Curating clinical phenotypes in PHACE Syndrome to reveal disease mechanisms", [Poster presentation], Biocuration 2021, October 05, 2021
  13. Sabrina Toro, Nico Matentzoglu, Melissa Haendel, Chris Mungall, Nicole Vasilevsky. "Reclassification and Axiomatization of Chromosomal Anomaly Diseases in the Mondo Ontology", [Poster presentation], Biocuration 2021, October 05, 2021
  14. Nicole Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Dazhi Jiao, Melissa Haendel, Peter Robinson and Chris Mungall. "Reclassification of Infectious Disease in the Mondo Disease Ontology", [Flash talk and Poster presentation], International Conference on Biomedical Ontology (ICBO), September 17, 2021. http://ceur-ws.org/Vol-3073/paper14.pdf 
  15. Rebecca Jackson, Nicolas Matentzoglu, James Overton, Randi Vita, James Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander Diehl, Damion Dooley, William D. Duncan, Nomi Harris, Melissa Haendel, Suzanna Lewis, Darren Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn Schriml, Barry Smith, Christian Stoeckert, Nicole Vasilevsky, Ramona Walls, Jie Zheng, Christopher Mungall and Bjoern Peters. "OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies", [Flash talk and Poster presentation], International Conference on Biomedical Ontology (ICBO), September 17, 2021
  16. Lauren E. Chan, Nicole A. Vasilevsky, Anne Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall and Melissa A. Haendel. "A semantic model leveraging pattern-based ontology terms to bridge environmental exposures and health outcomes", International Conference on Biomedical Ontology (ICBO), September 17, 2021, http://ceur-ws.org/Vol-3073/paper5.pdf
  17. Nicole Vasilevsky, Nico Matentzoglu, Dazhi Jiao, Melissa Haendel, Peter Robinson, Chris Mungall. "Mondo Disease Ontology: harmonizing disease concepts across the world", [Poster presentation and Lightning Talk] Curating the Clinical Genome (virtual), Link here, May 12, 2021
  18. "Mondo Clinical Reclassification Workshop", Virtual, https://mondo.monarchinitiative.org/pages/workshop/#april-2021, April 05, 2021
  19. Innovation across the Phenotypic Translational Divide Webinar - Part 3 - Cross Species Phenotyping, [Lead organizer], Link here , January 27, 2021 
  20. Callahan TJ, Wyrwa JM, Vasilevsky NA, Robinson PR, Haendel MA, Hunter LE, Kahn MG. "Ontologizing Health Systems at Scale: Making Translational Discovery a Reality." [Podium abstract] Virtual Joint Summits of the American Medical Informatics Association, 2021 
  21. Allison P Heath, Yuankun Zhu, Michele Mattioni, Bailey Farrow, Jena Lilly, Yiran Guo, Jo Lynne Rokita, Phillip B Storm, Samuel L Volchenboum, Javad Nazarian, Nicole Vasilevsky, Jack DiGiovanna, Melissa Haendel, Robert L Grossman, Brandi Davis-Dusenbery, Deanne M Taylor, Vincent Ferretti, Adam Resnick. "EPID-14. Gabriella Miller Kids First Data Resource Center: Collaborative Platforms For Accelerating Research In Pediatric Cancers & Structural Birth Defects", Neuro-Oncology, Vol 22, Supplement_3, iii321-iii321, December 2020
  22. Leigh Carmody, Nico Matentzoglu, Lauren Chan, Nicole Vasilevsky, Hannah Blau, Michael Gargano and Peter Robinson. "Medical Action Ontology (MAxO) expansion to include COVID19 treatment terms", WCO-2020: Workshop on COVID-19 Ontologies, Virtual, https://github.com/CIDO-ontology/WCO , October 23, 2020 
  23. Nicole Vasilevsky, Shahim Essaid, Nico Matentzoglu, Nomi L. Harris, Melissa Haendel, Peter Robinson, Christopher J. Mungall. "Mondo Disease Ontology: harmonizing disease concepts across the world", International Conference on Biomedical Ontology (ICBO), Bolzano, Italy. (In-person meeting canceled), http://ceur-ws.org/Vol-2807/abstractY.pdf , September 2020 
  24. Leigh Carmody, Nico Matentzoglu, Lauren Chan, Nicole Vasilevsky, Hannah Blau, Michael Gargano and Peter Robinson. "Medical Action Ontology (MAxO) expansion to include COVID19 treatment terms. WCO-2020: Workshop on COVID-19 Ontologies", 8th Annual Workshop of the Clinical and Translational Science Ontology Group. Virtual conference, October 23, 2020 
  25. Nicole Vasilevsky and Chris Mungall. "Mondo: The world's disease concepts, unified", Presentation to ClinGen Biocurators Working Group meeting, Link here, October 22, 2020
  26. Tiffany J Callahan, Jordan M Wyrwa, Nicole Vasilevsky, Peter N Robinson. "OMOP2OBO: Semantic Integration of Standardized Clinical Terminologies to Power Translational Digital Medicine Across Health Systems", Observational Health Data Science and Informatics (OHDSI) Global Symposium, Virtual, October 20-21, 2020 
  27. Innovation across the Phenotypic Translational Divide Webinar - Part 2, [Lead organizer], Link here, September 02, 2020 
  28. Chris Mungall and Nicole Vasilevsky. "Introduction to Mondo", GA4GH Clinical & Phenotypic Data Capture & Exchange Work Stream Webinar, June 18, 2020
  29. Innovation across the Phenotypic Translational Divide Webinar - Part 1, [Lead organizer], Link here, April 09, 2020
  30. Nicole Vasilevsky, Shahim Essaid, Nomi Harris, Julie McMurry, Melissa Haendel, Peter Robinson, Chris Mungall. "Mondo Disease Ontology: harmonizing disease concepts across the world." [Conference session]. AMIA 2020 Informatics Summit, Houston, TX, USA. (Meeting canceled), March 16-19, 2020
  31. Thessen, Anne E, Callahan, Tiffany J, Chan, Lauren E, Willis, Mary, Vasilevsky, Nicole, Boyles, Rebecca, ... Haendel, Melissa A. "Developing Semantic Technology for Toxicology Applications: Interdisciplinary Collaborations and Community Development" [Abstract]. Society of Toxicology 59th Annual Meeting and ToxExpo, Anaheim, CA., March 2020, Zenodo. http://doi.org/10.5281/zenodo.3697160
  32. Thessen AE, Haendel MA, Grondin CJ, Kulkarni RD, Brander S, Vasilevsky NA, Callahan TJ, et al, "Computable Exposures Workshop Report" Paper; Society of Toxicology 59th Annual Meeting and ToxExpo, Anaheim, CA., March 2020
  33. Y Guo, AP Heath, P Raman, Y Zhu, J Lilly, DM Taylor, PB Storm, AJ Waanders, V Ferretti, M Mattioni, B Davis-Dusenbery, ZL Flamig, RL Grossman, SL Volchenboum, S Mueller, J Nazarian, Nicole Vasilevsky, M Haendel, A Resnick. "Gabriella Miller Kids First Data Resource Center: Harmonizing genomic and clinical information to support childhood cancer and structural birth defect research", European Journal Of Human Genetics, 2019. Vol 27, 1690-1691, 2019 
  34. Nicole Vasilevsky, Julie McMurry, Shahim Essaid, Nico Matentzoglu, Nomi Harris, Peter Robinson, Chris Mungall, Melissa Haendel. "Mondo Disease Ontology: harmonizing disease concepts around the world", [Poster presentation]. Rocky Bioinformatics, Snowmass, CO, USA, Link here, December 06, 2019 
  35. Heath, A., Raman, P., Zhu, Y., Lilly, J., Taylor, D., Storm, P., Waanders, A., Ferretti, V., Mattioni, M., Davis-Dusenbery, B., Flamig, Z., Grossman, R., Volchenboum, S., Mueller, S., Nazarian, J., Vasilevsky, N., Haendel, M., & Resnick, A. "TMOD-19. Gabriella Miller Kids First Data Resource Center: Large-scale Harmonized Clinical And Genomic Data Platform To Support Childhood Cancer And Structural Birth Defect Research", Neuro-Oncology, 21(Suppl 2), ii125. https://doi.org/10.1093/neuonc/noz036.256, 2019
  36. Nicole A. Vasilevsky, Julie A. McMurry, Shahim Essaid, Nomi L. Harris, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel. "Mondo Disease Ontology: harmonizing disease concepts around the world", [Poster presentation]. Childhood Cancer Data Initiative Symposium 2019, Washington, DC, USA. Link here, July 29, 2019
  37. Allison P Heath, Deanne M Taylor, Yuankun Zhu, Pichai Raman, Jena Lilly, Phillip Storm, Angela J Waanders, Vincent Ferretti, Christina Yung, Michele Mattioni, Brandi Davis-Dusenbery, Zachary L Flamig, Robert Grossman, Samuel L Volchenboum, Sabine Mueller, Javad Nazarian, Nicole Vasilevsky, Melissa A Haendel, Adam Resnick. "Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research", Cancer Research. Vol 79, 13 Supplement, 2464-2464, July 2019 
  38. Leigh C. Carmody, Xingmin A. Zhang, Nicole A. Vasilevsky, Chris J. Mungall, Nico Matentzoglu, Peter N. Robinson. "Medical Action Ontology (MAxO)" [Poster presentation]. Curating the Clinical Genome 2019, Washington, DC, May 2019
  39. Nicole Vasilevsky, Aaron Zhang, Amy Yates, JP Gourdine, Tiffany Callahan, Melissa Haendel, Larry Hunter, Peter Robinson. "LOINC2HPO: Curation of Phenotype Data from the Electronic Health Records using the Human Phenotype Ontology", [Conference session and poster presentation]. Biocuration 2019, Cambridge, UK, https://f1000research.com/slides/8-383 and https://f1000research.com/posters/8-382, April 08, 2019
  40. Allison P. Heath PhD, Pichai Raman PhD, Yuankun Zhu MS, Jena Lilly MS, Deanne M. Taylor PhD, Phillip B. Storm MD, Angela J. Waanders MD, Vincent Ferretti PhD, Michele Mattioni PhD, Brandi Davis-Dusenbery PhD, Zachary L. Flamig PhD, Robert L. Grossman PhD, Samuel L. Volchenboum MD PhD, Sabine Mueller MD PhD, Javad Nazarian PhD, Nicole Vasilevsky PhD, Melissa Haendel PhD, Adam Resnick PhD. "Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research", [Abstract]. American Association for Cancer Research (AACR) 2019, Atlanta, GA, USA, March 29 -- April 03, 2019
  41. Nicole Vasilevsky. "LOINC2HPO: Improving Translational Informatics by Standardizing EHR Phenotypic Data Using the Human Phenotype Ontology", [Keynote address]. Rocky Bioinformatics 2018, December 07, 2018, Snowmass, CO, USA. Link here  
  42. Nicole Vasilevsky, Aaron Zhang, Jean-Philippe Gourdine, Amy Yates, Melissa Haendel, Peter Robinson. "LOINC2HPO: Improving Translational Informatics by Standardizing EHR Phenotypic Data Using the Human Phenotype Ontology", [Poster presentation]. Rocky Bioinformatics 2018, Snowmass, CO, USA, Link here, December 07, 2018
  43. Monarch Disease Ontology workshop, Co-organizer, Broad Institute, Cambridge, MA, https://mondo.monarchinitiative.org/pages/workshop/#november-2018, November 27-28, 2018
  44. Melissa Haendel, Nicole Vasilevsky, Kayli Rageth, Sebastian Koehler, Peter Robinson, Julie McMurry, Kent Shefchek, Catherine Brownstein, Ingrid Holm and Chris Mungall. "An (ontological) patient perspective", [Abstract]. International Conference on Biomedical Ontology (ICBO), Corvallis, OR, USA., August 06-07, 2018 
  45. Jean-Philippe Gourdine**, Nicole Vasilevsky, Lilly Winfree, Matthew Brush, Melisa Haendel. "Expanding the Molecular Glycophenotype Ontology to include model organisms and acquired diseases", [Poster presentation]. International Conference on Biomedical Ontology (ICBO) 2018, Corvallis, OR, USA., August 06-07, 2018
  46. David Osumi-Sutherland, Nico Matentzoglu, Nicole Vasilevsky, Melissa Haendel, Chris Mungall, Jim Balhoff. "Phenotype Ontologies Traversing All The Organisms (POTATO)", [Workshop]. International Conference on Biological Ontology, Corvallis, OR, USA., August 06-07, 2018
  47. Khuthala Mnika, Sickle Cell Disease Ontology Working Group, Ambroise Wonkam and Nicola Mulder. "An ontology-driven data capture and catalogue framework for the development of research and clinical databases in Sickle Cell Disease", [Poster presentation]. International Conference on Biomedical Ontology (ICBO) 2018, Corvallis, OR, USA., August 06-07, 2018
  48. Gaston Mazandu, Sickle Cell Disease Ontology Working Group, Ambroise Wonkam and Nicola Mulder. "Development and implementation of the Sickle Cell Disease Ontology", [Poster presentation]. International Conference on Biomedical Ontology (ICBO) 2018, Corvallis, OR, USA., August 06-07, 2018 
  49. Nicole Vasilevsky. "The Human Phenotype Ontology", Sickle Cell Disease Ontology Workshop, June 4, 2018, Cape Town, South Africa. https://figshare.com/articles/Human_Phenotype_Ontology/6510257
  50. Nicole Vasilevsky; Balhoff, James; Brush, Matthew; de Coronado, Sherri; Fragoso, Gilberto; Wright, Lawrence W.; Christopherson, Laura; Robasky, Kimberly; Mungall, Chris; Haendel, Melissa. "A comprehensive disease ontology for human disease curation",  [Conference session]. Biocuration 2018 conference, Shanghai, China, Figshare: https://doi.org/10.6084/m9.figshare.6141551.v1, April 10, 2018
  51. M.A. Haendel, N. Vasilevsky, M.E. Engelstad, E.D. Foster, T. Groza, J. McMurry, C.J. Mungall, C. Brownstein, I. Holm, C. Boerkoel, K. Rageth, M. Moore, P. Robinson, S. Köhler. "Deep phenotyping for patients by patients: A lay-friendly version of the Human Phenotype Ontology", [Abstract]. ASHG, Orlando, FL, USA, October 20, 2017
  52. Chris Mungall, Sebastian Köhler, Peter Robinson, Nicole Vasilevsky, Ian Holmes, Melissa Haendel. "kBOOM! Intelligent merging of different disease terminologies", [Poster presentation]. BD2K All Hands Meeting, Bethesda, MD, USA, November 2016
  53. Erin Foster, Mark Engelstad, Chris Mungall, Peter Robinson, Sebastian Kohler, Melissa Haendel and Nicole Vasilevsky. "Empowering patients by increasing accessibility to clinical terminology", [Conference session]. Medical Library Association Pacific Northwest Chapter meeting, Portland, OR, USA, http://www.slideshare.net/NicoleVasilevsky/empowering-patients-by-increasing-accessibility-to-clinical-terminology, October 18, 2016
  54. Vasilevsky N, Engelstad M, Foster E, Mungall C, Robinson P, Köhler S, Haendel M. "IT402: Enhancing the Human Phenotype Ontology for Use by the Layperson", [Conference session]. International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016), Corvallis, Oregon, USA, http://www.slideshare.net/NicoleVasilevsky/enhancing-the-human-phenotype-ontology-for-use-by-the-layperson-64669468, August, 2016 
  55. Nicole Vasilevsky, Mark Engelstad, Erin Foster, Chris Mungall, Peter Robinson, Sebastian Köhler, Melissa Haendel. "Enhancing the Human Phenotype Ontology for Use by the Layperson", [Poster presentation]. Biocuration 2016, Geneva, Switzerland, https://dx.doi.org/10.6084/m9.figshare.3168172.v1, http://www.slideshare.net/NicoleVasilevsky/enhancing-the-human-phenotype-ontology-for-use-by-the-layperson, F1000Research 2016, 5:708 (poster) (doi: 10.7490/f1000research.1111752.1), April 2016 
  56. M. A. Haendel, N. L. Washington, N. Vasilevsky, J. Nguyen Xuan, C. Condit, D. Smedley, M. Brush, S. Köhler, T. Groza, K. Shefchek, H. Hochheiser, S. E. Lewis, P. N. Robinson, C. J. Mungall. "The Monarch Initiative. The Monarch Initiative: An open science integrated genotype-phenotype platform for disease and model organism discovery", [Abstract]. American Society of Human Genetics 2015 Annual Meeting, Baltimore, MD, USA,  October 10, 2015
  57. P. Robinson, S. Köhler, D. Moldenhauer, N. Vasilevsky, G. Baynam, T. Zemojtel, L. Schriml, W. Kibbe, P. Schofield, T. Beck, D. Vasant, A. Brookes, A. Zankl, N. Washington, C. Mungall, S. Lewis, M. Haendel, H. Parkinson, T. Groza. "The Human Phenotype Ontology: Semantic unification of common and rare disease", [Abstract]. American Society of Human Genetics 2015 Annual Meeting, Baltimore, MD, USA, October 10, 2015 
  58. Nicole Vasilevsky, Mark Engelstad, and Melissa Haendel. "The Monarch Initiative: Semantic Phenotyping for Disease Diagnosis and Discovery", [Poster presentation]. Rare Disease Symposium, Oregon Health & Science University, Portland, OR, USA. http://www.slideshare.net/NicoleVasilevsky/monarch-initiative-poster-rare-disease-symposium-2015, April 2015
  59. Washington N, Vasilevsky N, Chesler E, Bogue M and Haendel M. "Investigating the relationship between standard laboratory mouse strains and their mutant phenotypes", [Abstract]. Phenotype Day, Intelligent Systems for Molecular Biology, Boston, MA, USA, 2014
  60. N. L. Washington, M. Brush, A. Bandrowski, C. Borromeo, K. Eilbeck, J. Espino, J. Grethe, A. Gupta, H. Hochheiser, S. Hoffmann, S. E. Lewis, L. Lui, M. Martone, C. J. Mungall, P. Robinson, D. Smedley, C. Torniai, N. Vasilevsky, M. A. Haendel. "Reducing variability in variation data using a common genotype-phenotype model", [Abstract]. American Society of Human Genetics. Boston, MA, USA, October 22-26, 2013
  61. Nicole Washington; Christopher Mungall; Harry Hochheiser; Amarnath Gupta; Anita Bandrowski; Jeff Grethe; Maryann Martone; Nicole Vasilevsky; Matthew Brush; Melissa Haendel. "Semantic Integration of Genotype-phenotype Resources", [Abstract]. AMIA 2013 Summit on Translational Bioinformatics. San Francisco, CA, USA, 2013 

Biomedical Ontologies and Bioinformatics

  1. Jade Hotchkiss, Victoria Nembaware, Wilson Mupfururirwa, Nicole Vasilevsky, Melissa Haendel, Ambroise Wonkam, Nicola Mulder. First layperson translation of the Sickle cell disease ontology: Making SCD-Centred eHealth Platforms More Accessible. [Poster Presentation] ISMB conference, July 2023.
  2. Imke Tammen, Marius Mather, Sabrina Toro, Kathleen R. Mullen, Halie M. Rando, Nicole Vasilevsky, Nico Matentzoglu, Melissa Haendel, Zhi-Liang Hu, Carissa A. Park, Gregoire Leroy, Frank W. Nicholas. “OMIA: Introducing OMIA variant IDs and the Vertebrate Breed Ontology” [Poster Presentation] ISAG conference, July 2023.
  3. Nicole Vasilevsky, “Using Ontologies: Tutorial on Finding and Requesting Ontology Terms”, Environmental Health Language Collaborative 2023 Workshop: Sharing Your Environmental Health Sciences (EHS) Data: Metadata, Standards, and Tools, Virtual, January 19, 2023, Slides available here
  4. James A. Overton, Rebecca Jackson, Chris Mungall, Nicole Vasilevsky, Nicolas Matentzoglu and Randi Vita, “OBO Tutorial: Using and Reusing Ontologies”, Ann Arbor, MI, September 26, 2022
  5. Callahan TJ, Baumgartner WA, Matenzoglu NA, Vasilevsky NA, Hunter LE, Kahn MG. "Assessing ontology fitness for use with the Harmonized Data Quality Framework", Paper; Annual International Conference on Intelligent Systems for Molecular Biology, Madison, WI,  July 2022 
  6. Nicole Vasilevsky. "Using ontologies to standardize rare disease data collection", Critical Path Institute RDCA-DAP Webinar series. June 14, 2022. Recording available here
  7. Vasilevsky N. "Ontologies 101: Standardize your data using ontologies", University of Colorado Lunch and Learn, Virtual, December 15, 2021.
  8. Overton JA, Mungall C, Vasilevsky N, Matentzoglu N, and Vita R, "ICBO 2021 Tutorial", International Conference for Biomedical Ontologies (ICBO), Virtual, https://oboacademy.github.io/obook/tutorial/icbo2021/, September 15, 2021
  9. Vasilevsky, NA, "Ontologies 101: Standardize your data using ontologies."  Human Toxicology and Environmental Health Sciences Research Center research seminar, University of Iowa, bit.ly/ehsrcseminar, September 10, 2021 
  10. Nicole Vasilevsky. Mondo: The World's Disease Concepts, Unified. ClinGen Virtual Retreat 2021, https://mondo.monarchinitiative.org/pages/workshop/#june-2021, June 24, 2021
  11. David Osumi-Sutherland, Nicolas Matentzoglu, James McLaughlin, Henriette Harmse, Susan Bello, Nicole Vasilevsky, James Balhoff, Christopher Mungall, Melissa Haendel and Helen Parkinson. "Ontology mappings - untangling the hairball and democratising the results", WSBO-2021: Workshop on Synergizing Biomedical Ontologies, Virtual, https://github.com/OntoloBridge/WSBO/, July 14, 2021
  12. Bello, S and Vasilevsky, NA, "Bridging the Phenotype Divide by Using Shared Patterns", ​​WSBO-2021: Workshop on Synergizing Biomedical Ontologies, Virtual, https://github.com/OntoloBridge/WSBO/ , Recording: https://youtu.be/L9Vfoxy1_2I , July 14, 2021
  13. Nicole Vasilevsky. "Systematically encoding cell type definitions in the Cell Ontology using classical and molecular criteria", Ontologies for Cell Type Cards Workshop, Virtual, June 30, 2021.
  14. Nicole Vasilevsky. "Data Harmonization and Common Data Elements", Planning a Virtual Down Syndrome Cohort Across the Lifespan Workshop (NIH), Potomac, MD, USA, September 23-24, 2019 Link here
  15. Nicole Vasilevsky. "Introduction to Ontologies", Exposures Workshop, Oregon State University, Corvallis, OR, USA. figshare; 2019. doi:10.6084/m9.figshare.9793142.v1, September 09, 2019
  16. Nicole Vasilevsky. "Ontologies 101", CD2H Architecting Attribution meeting, Northwestern University, Chicago, IL, USA. [Link here])https://figshare.com/articles/Introduction_to_Ontologies/11338493), February 21, 2019
  17. Nico Matentzoglu, David Osumi-Sutherland, James P. Balhoff, Susan Bello, Yvonne Bradford, Leigh Cardmody, Chris Grove, Midori A. Harris, Nomi Harris, Sebastian Köhler, Julie McMurry, Chris Mungall, Moni Munoz-Torres, Clare Pilgrim, Sofia Robb, Peter N. Robinson, Erik Segerdell, Nicole Vasilevsky, Melissa Haendel. "uPheno 2: Framework for standardized representation of phenotypes across species", [Poster presentation]. Biocuration 2019, Cambridge, UK, https://f1000research.com/posters/8-403, April 08, 2019 
  18. Nicole Vasilevsky; Balhoff, James P.; Mungall, Chris; Osumi-Sutherland, David; Kohler, Sebastian; Bello, Susan; Smith, Cynthia; Robinson, Peter; Haendel, Melissa. "Aligning the Human Phenotype and Mammalian Phenotype Ontology using Dead Simple Ontology Design Patterns", [Flash talk and Poster presentation]. International Conference on Biomedical Ontology (ICBO) 2017, Newcastle, UK, figshare. https://doi.org/10.6084/m9.figshare.5406181.v1, September 2017
  19. Vasilevsky, Nicole; Keith, Daniel. "A match made in heaven: domain expert meets CSV; gives birth to ontologies", [Conference session]. csv,conf, v3, Portland, OR, USA, Figshare. Link here, May 03, 2017
  20. The Ontology Development Group. "The Ontology Development Group: A Visual Timeline", [Poster presentation]. OHSU BICC 25-year anniversary celebration. Portland, OR, USA. https://dx.doi.org/10.6084/m9.figshare.4141797.v1, October 28, 2016
  21. Chibucos M, Nadendla S, Munro J, Mitraka E, Olley D, Vasilevsky N, Brush M, Giglio M. "IP30: Supporting database annotations and beyond with the Evidence & Conclusion Ontology (ECO)", [Abstract]. International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016), Corvallis, OR, USA, http://ceur-ws.org/Vol-1747/IP30_ICBO2016.pdf , August 1-4, 2016 
  22. Terry Meehan, Christopher J. Mungall, Nicole A. Vasilevsky, Melissa A. Haendel, Judith A. Blake, Alexander D. Diehl. "Finding Functional Signatures for Immune Cell Types Via Gene Expression Analysis", [Abstract]. AMIA 2012 Summit on Translational Bioinformatics. San Francisco, CA, USA, 2012 
  23. Brush, M, Nicole Vasilevsky, Torniai C, Haendel MA. "The Reagent Ontology: an Integrated Resource for Curation of Biomedical Research Reagents", [Abstract]. Biocuration 2012: The Conference of the International Society for Biocuration. Washington DC, USA., April 2-4, 2012 
  24. Brush M, Vasilevsky N, Torniai C, Johnson T, Shaffer C, and Haendel M. "Developing a Reagent Application Ontology within the OBO Foundry Framework." [Abstract]. International Conference on Biomedical Ontology 2011, Buffalo, NY, USA., July 26--30, 2011
  25. Frost HR, Hadden L, Bourges-Waldegg D, MacFadden D, Haendel M, Torniai C, Vasilevsky N, Thompson P. "Discovering biomedical research resources in text: an ontology-driven approach using curated data for incremental retraining", [Abstract]. AMIA 2011 Summit on Translational Bioinformatics, San Francisco, CA, USA, 2011

Biocuration

  1. Nicole Vasilevsky and Randi Vita, “Careers in Biocuration”, Biocuration 2023, Padua, Italy, April 26, 2023.
  2. Ruth Lovering, Rama Balakrishnan, Susan Bello, Parul Gupta, Robin Haw, Tarcisio Mendes de Farias, Sushma Naithani, Federica Quaglia, Raul Rodriguez-Esteban, Mary Ann Tuli and Nicole Vasilevsky, “Join the International Society for Biocuration Community”, Biocuration 2023, Padua, Italy, April 2023
  3. “Biocuration Careers Workshop, Lead organizer, virtual, September 21, 2022, https://zenodo.org/record/7102460#.YyuIBOzML6M
  4. Nicole Vasilevsky. "Research, Development, and Other Opportunities", ClinGen Clinical Genomics Careers Panels Series, Virtual, July 19, 2022 
  5. Vasilevsky N. "International Society for Biocuration Annual General Meeting", 14th International Society for Biocuration Conference, Virtual, October 05, 2021. F1000Research 2021, 10:1043 (slides) (doi: 10.7490/f1000research.1118824.1) [version 1; not peer reviewed]
  6. Equality, Diversity, and Inclusion in Biocuration Webinar, Biocuration 2021,  Co-organizer, August 17, 2021
  7. Nara Sobreira, Orion Buske, Neethu Shah, Alex Wagner, Nicole Vasilevsky and Adriana Malheiro. "Research, Development, and Other Opportunities", ClinGen Clinical Genomics Careers Panels Series, Virtual, https://www.clinicalgenome.org/tools/genomics_careers_panel/research-development-and-other-opportunities/, July 21, 2021
  8. Equality, Diversity, and Inclusion in Biocuration Webinar, Biocuration2020, Lead Organizer and presenter, https://docs.google.com/presentation/d/1vBkXB2glSH5CFgt8cBwvg-hINGM69xppVE0s8gKKv4k/edit#slide=id.p1, May 11, 2020
  9. Equality, Diversity, and Inclusion Workshop. Biocuration 2019, Cambridge, UK, https://f1000research.com/slides/8-527, April 08, 2019
  10. Nicole Vasilevsky, Cecilia Arighi, Randi Vita. "Careers in Biocuration: An overview of the current status, challenges and goals in the biocuration field", [Workshop]. Biocuration 2018 conference, Shanghai, China, Figshare: https://doi.org/10.6084/m9.figshare.6146429.v1, April 09, 2018
  11. Nicole Vasilevsky, Ted Laderas, Jackie Wirz, Bjorn Pederson, David Dorr, William Hersh, Shannon McWeeney, Melissa Haendel. "Training Future Biocurators Through Data Science Trainings and Open Educational Resources", [Poster presentation]. Biocuration 2017, Palo Alto, CA, USA, F1000Research 2017, 6:271 (poster) (doi: 10.7490/f1000research.1113751.1, version 1; not peer reviewed), March 2017 
  12. Nicole Vasilevsky, Michael Bada, Melissa Haendel and Lawrence Hunter. "Updating and Extending the Concept Annotations of the CRAFT Corpus", [Conference session]. Biocuration 2016, Geneva, Switzerland. [v1; not peer reviewed] F1000Research 2016, 5:709 (slide presentation) (doi: 10.7490/f1000research.1111753.1), 2016 
  13. Bada M, Vasilevsky N, Haendel M, Hunter L. "IP08: Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and Extensions", [Poster presentation]. International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016), Corvallis, OR, USA, http://ceur-ws.org/Vol-1747/IP08_ICBO2016.pdf , August 1-4, 2016 
  14. Michael Bada, Nicole Vasilevsky, Melissa Haendel and Lawrence Hunter. "Updating and Extending the Concept Annotations of the CRAFT Corpus", [Poster presentation]. Biocuration 2016, Geneva, Switzerland, [v1; not peer reviewed]. F1000Research 2016, 5:710 (poster) (doi: 10.7490/f1000research.1111754.1), April 17-19 2016 

Attribution and Representing Researcher Expertise

  1. Hosseini, Mohammad, Ilik, Violeta, Vasilevsky, Nicole, & Holmes, Kristi. "Deep Dive: Ethics of Contributor Roles", Virtual Workshop, FORCE2021, Zenodo. https://doi.org/10.5281/zenodo.5770658, December 09, 2021
  2. Nicole Vasilevsky, Matthew Brush, Anne Thessen, Marijane White, Karen Gutzman, Lisa O'Keefe, Kristi Holmes, Melissa A. Haendel. "Giving Credit where credit is due: building a computable attribution system", [Poster presentation], Biocuration 2020, Bar Harbor Maine, USA. (Meeting canceled), May 17-20, 2020
  3. Nicole Vasilevsky, Matthew Brush, Anne Thessen, Marijane White, Karen Gutzman, Lisa O'Keefe, Kristi Holmes, Melissa Haendel. "Giving credit where credit is due: How to make more meaningful connections between people and their roles, work, and impact",  [Conference session and poster presentation]. Rocky Bioinformatics, Snowmass, CO, USA. Link here, December 06, 2019 
  4. Kristi Homes, Nicole Vasilevsky, Matthew Brush, Marijane White, Karen Gutzman, Lisa O'Keefe, Anne Thessen, Melissa Haendel. "CREDITLAND: How to enhance attribution to make more meaningful connections for everyone to their roles, work, & impact", [Poster presentation]. Force2019, Edinburgh, UK, https://zenodo.org/record/3515915#.Xa91vpNKgl4, October 2019
  5. Kristi Holmes, Marijane White, Nicole Vasilevsky, Karen Gutzman, David Eichmann, Matthew Brush, Annie Wescott, Patty Smith, Sara Gonzales and Melissa Haendel. "People + Technology + Data + Credit: Developing a sustainable community-driven approach to attribution", [Poster presentation]. Pidapalooza 2019, Dublin, Ireland. https://digitalhub.northwestern.edu/files/09baabdb-e5ad-477b-abfc-f6cf70f19df0 
  6. Kristi Holmes, Marijane White, Nicole Vasilevsky, Karen Gutzman, David Eichmann, Matthew Brush, Annie Wescott, Patty Smith, Sara Gonzales and Melissa Haendel. "People + Technology + Data + Credit: Developing a sustainable community-driven approach to attribution", [Poster presentation] Biocuration 2019, Cambridge, UK, https://digitalhub.northwestern.edu/files/09baabdb-e5ad-477b-abfc-f6cf70f19df0, April 2019
  7. Kristi Holmes, Marijane White, Nicole Vasilevsky, Karen Gutzman, David Eichmann, Matthew Brush, Annie Wescott, Patty Smith, Sara Gonzales and Melissa Haendel. "People + Technology + Data + Credit: Developing a sustainable community-driven approach to attribution", [Poster presentation]. Pidapalooza 2019, Dublin, Ireland, https://digitalhub.northwestern.edu/files/09baabdb-e5ad-477b-abfc-f6cf70f19df0, January 22-24, 2019 
  8. Robert McDonald and Nicole Vasilevsky. "Creating Sustainable Communities in Open Data Resources: The eagle-i and VIVO Semantic Data Tools in Action", [Conference session]. Association of College and Research Libraries Conference, Portland, OR, USA. http://www.slideshare.net/rhmcdonald/creating-sustainable-communities-in-open-data-resources-the-eaglei-and-vivo-semantic-data-tools-in-action, March 2015
  9. Haendel M and Vasilevsky N. "Research Efficiency & Reproducibility: Leveraging Research Resources", Elsevier webinar, online, April 2014
  10. Carlo Torniai, PhD, Shahim Essaid, MD, Christopher Barnes, Stephen Williams, BS, Janos G. Hajagos, PhD, Nicole Vasilevsky, PhD, Melissa Haendel, PhD. "From billing codes to expertise: mining, representing and sharing clinical research profiles in the Linked Open Data Cloud", [Abstract]. VIVO 2012 Conference. Miami, Florida, USA, August 22-24, 2012
  11. Carlo Torniai, Christopher Barnes, Jon Corson-Rikert, Melissa Haendel, Christopher Kelleher, Brian Lowe, Stella Mitchell, Nicole Vasilevsky, Stephen Williams, CTSAconnect Consortium. "CTSAconnect: A Linked Open Data approach to represent clinical and research expertise, activities, and resources", [Abstract]. VIVO 2012 Conference. Miami, Florida, USA, August 22-24, 2012 
  12. Vasilevsky NA, Johnson T, Corday K, Torniai C, Brush M, Segerdell E, Wilson M, Shaffer C and Haendel M. "The eagle-i research resource discovery system", [Poster presentation]. Biocuration 2012: The Conference of the International Society for Biocuration. Washington DC, USA, April 2-4, 2012 
  13. Vasilevsky, N. "eagle-i Software Demonstration." Western Association of Core Directors, Portland, OR, November 01, 2012
  14. Vasilevsky NA, Johnson T, Corday K, Torniai C, Brush M, Segerdell E, Wilson M, Shaffer C and Haendel M. "The eagle-i research resource discovery system", [Abstract]. OHSU Research Week. Portland, OR, USA, May 07-10, 2012
  15. Vasilevsky N, Torniai C, Haendel M, and Shaffer C. "The semantic web is changing research and library science", Oregon Library Association Annual Meeting, Bend, OR, USA, April 27, 2012
  16. Torniai C, Kelleher C, Corson-Rikert J, Haendel M and the CTSAconnect Consortium. "CTSAconnect: A Linked Open Data approach to represent clinical and research expertise, activities, and resources", [Abstract]. Science of Team Science, Chicago, IL, USA, April 16-19, 2012 

Education and Training

  1. Nicole Vasilevsky, James Overton, Rebecca Jackson, Sabrina Toro, Shawn Tan, David Osumi-Sutherland, Nicolas Matentzoglu. “OBO Academy: Training materials for Bio-ontologists.” [Invited Virtual Talk], OntoCommons, Oslo, Sweden. June 14, 2023.
  2. James Overton, Rebecca Jackson, Sabrina Toro, Shawn Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole Vasilevsky. “OBO Academy: Training materials for Bio-ontologists.” [Lightning talk and Poster presentation] ICBO, Ann Arbor, MI. September 27, 2022. https://zenodo.org/record/7116623#.YzMDz-zMJJE
  3. Nicole Vasilevsky, Teaching Data Science to Undergraduate Students. [Conference session]. From Evidence to Scholarship Conference, Reed College, Portland, OR. Slideshare: https://www.slideshare.net/NicoleVasilevsky/teaching-data-science-to-undergraduate-students, January 22-24, 2019
  4. Nicole Vasilevsky, Shannon McWeeney, William Hersh, David A. Dorr, Ted Laderas, Jackie Wirz, Bjorn Pederson, Melissa Haendel. "Improving Knowledge Discovery Through Development of Big Data to Knowledge Skills Courses and Open Educational Resources", [Poster presentation]. OHSU BICC 25-year anniversary celebration. Portland, OR, USA, http://www.slideshare.net/NicoleVasilevsky/improving-knowledge-discovery-through-development-of-big-data-to-knowledge-skills-courses-and-open-educational-resources, October 28, 2016
  5. Nicole Vasilevsky, Jackie Wirz, Bjorn Pederson, Ted Laderas, Shannon McWeeney, William Hersh, David Dorr, and Melissa Haendel. "Data science education resources for everyone", [Conference session]. Medical Library Association Pacific Northwest Chapter meeting in Portland, OR., October 18, 2016 [Link here])http://www.slideshare.net/NicoleVasilevsky/data-science-education-resources-for-everyone)
  6. William Hersh, David A. Dorr, Melissa Haendel, Nicole Vasilevsky, Bjorn Pederson, Jackie Wirz, Shannon McWeeney. "Couture Curricula - BD2K Data Science Tailored to Your Needs", [Poster presentation]. Force2016 conference, Portland, OR, USA, FigShare, https://dx.doi.org/10.6084/m9.figshare.3159493.v1, April 17-19, 2016 
  7. Pederson, B., **Vasilevsky, N., Hersh, W., McWeeney, S., Haendel, M. & Wirz, J. "Big Data to Knowledge Open Educational Resources: Development and Dissemination Considerations", [Abstract]. In Proceedings of EdMedia: World Conference on Educational Media and Technology 2016 (pp. 1729-1733). Association for the Advancement of Computing in Education (AACE), 2016
  8. Nicole Vasilevsky, Nicole Washington, Chuck Borromeo, Matthew Brush, et al. "From Model Mechanism to Precision Medicine: an Open Science Integrated Genotype-Phenotype Platform", [Poster presentation]. NIH BD2K all-hands meeting, Bethesda, MD, USA. http://www.slideshare.net/mhaendel/the-monarch-initiative-from-model-organism-to-precision-medicine, November 12, 2015
  9. William Hersh, Shannon McWeeny, Melissa Haendel, Nicole Vasilevsky, Bjorn Pederson. "Open Educational Resources for Big Data Science", [Poster presentation]. Big Data to Knowledge (BD2K) All Hands Meeting, Bethesda, MD, USA. http://www.slideshare.net/billhersh/open-educational-resources-for-big-data-science, November 12-13, 2015
  10. David Dorr, Melissa Haendel, Nicole Vasilevsky, Bjorn Pederson, Jackie Wirz, William Hersh, Shannon McWeeny. "Improving Knowledge Discovery Through Development of Big Data to Knowledge Skills Course", [Poster presentation]. Big Data to Knowledge (BD2K) All Hands Meeting, Bethesda, MD, USA, November 12-13, 2015
  11. Melissa Haendel, David A. Dorr, William Hersh, Nicole Vasilevsky, Shannon McWeeney. "Improving Knowledge Discovery Through Development of a Big Data to Knowledge Skills Course", [Poster presentation]. OHSU Research Week, Portland, OR, USA, May 2015 
  12. Melissa Haendel, David A. Dorr, William Hersh, Nicole Vasilevsky, Shannon McWeeney. "Improving Knowledge Discovery Through Development of a Big Data to Knowledge Skills Course", [Poster presentation]. OHSU Research Week, Portland, OR, May 2015
  13. William Hersh, Shannon McWeeney, Melissa Haendel, Nicole Vasilevsky. "Open Educational Resources for Big Data Science", Improving Knowledge Discovery Through Development of a Big Data to Knowledge Skills Course. [Poster presentation]. OHSU Research Week, Portland, OR, May 2015
  14. Vasilevsky N and Schaffer M. "Educating Naturopathic Medicine Students in Basic Science Laboratory Skills and Data Analysis." [Conference session]. 2012 International Congress for Educators in Complementary and Integrative Medicine. Washington DC, USA, October 25, 2012

Data Management, Data Standards and Altmetrics

  1. Nicole Vasilevsky and Lauren Chan. "Critical computational and project management skills for research", [Conference session]. Supporting Undergraduate Research Conference, Reed College, Portland, OR, USA. (Meeting canceled), October 22-23, 2020
  2. Vasilevsky, Nicole, "Data Science Resources for Anyone, Anywhere: Development of Skills Courses and Open Educational Resources", [Conference session]. Medical Library Association Conference, Seattle, WA, USA. figshare. https://doi.org/10.6084/m9.figshare.5056921.v1, May 30, 2017
  3. Vasilevsky, Nicole.  "Data Science Resources for Anyone, Anywhere", NN/LM Pacific Northwest Region Rendezvous webinar, Figshare. Link here, April 19, 2017
  4. Ted Laderas, Melissa Haendel, Nicole Vasilevsky, Bjorn Pederson, Jackie Wirz, William Hersh, David A. Dorr, Shannon McWeeney. "Getting your hands dirty with data", [Poster presentation]. BD2K All Hands Meeting, Bethesda, MD, USA. https://dx.doi.org/10.6084/m9.figshare.4235594.v1, November 2016
  5. Nicole Vasilevsky, Bjorn Pederson, Jackie Wirz, Shannon McWeeney, Melissa Haendel, William Hersh. "Data Science Educational Resources for Anyone, Anywhere", [Poster presentation]. BD2K All Hands Meeting, Bethesda, MD, USA. https://dx.doi.org/10.6084/m9.figshare.4235555.v1, November 2016)
  6. Ted Laderas, Nicole Vasilevsky, Melissa Haendel, Shannon McWeeney, David Dorr. Get real: A synthetic dataset illustrating clinical and genetic covariates. [Poster presentation]. BD2K All Hands Meeting, Bethesda, MD, USA, November 2016
  7. Nicole Vasilevsky, Victoria Mitchell, and Jeremy Kenyon. "Roles for Libraries in Providing Research Data Management Services", [Conference session]. Association of College and Research Libraries Conference. Portland, OR, USA., March 2015, Link here.
  8. Vasilevsky, N. "The Role of Libraries in Data Management and Curation", [Conference session]. American Library Association conference, Las Vegas, NV, USA, June 2014 
  9. Robin Champieux, Nicole Vasilevsky and Jackie Wirz. "Research Communication Workshop. [Workshop]. Online Northwest, 2014. https://pdxscholar.library.pdx.edu/onlinenorthwest/2014/Presentations/12/ (Meeting canceled), February 07, 2014
  10. Vasilevsky N., Wirz J. and Haendel MA. "Data Management", [Conference session]. SPARC Conference Portland, OR, USA, May 3-4, 2013
  11. Vasilevsky N and Zwickey H. "Data and Information Management: Teaching Best Practices" [Conference session]. International Association of Medical Science Education Meeting, Portland, OR, USA. http://iamse.org/conf/conf16/IAMSEVasilevsky2012.pdf, June 25, 2012

Open Science and Scientific Reproducibility

  1. Nicole Vasilevsky, Seth Carbon, Robin Champieux, Julie McMurry, Lilly Winfree**, Letisha Wyatt, Melissa Haendel. "Evaluating scientific data licensing with the (Re)usable Data Project", [Poster presentation]. Force2019, Edinburgh, UK, https://zenodo.org/record/3497130#.XahHjJNKgl4, October 2019 **Denotes trainee
  2. Nicole Vasilevsky, Jessica Minnier, Melissa Haendel, Robin Champieux. "A Need for Better Data Sharing Policies: A Review of Data Sharing Policies in Biomedical Journals", [Poster presentation]. Biocuration 2017, Palo Alto, CA, USA, [version 1; not peer reviewed]. F1000Research 2017, 6:270 (poster) (doi: 10.7490/f1000research.1113750.1), March 2017 
  3. Robin Champieux, Jessica Minnier, Melissa Haendel, Nicole Vasilevsky. "A need for better data sharing policies: A review of data sharing policies in biomedical journals", [Poster presentation]. BD2K All Hands Meeting, Bethesda, MD, USA, November 2016
  4. Bandrowski A, Martone M, Vasilevsky N, Brush M and Haendel M. "Identifying research resources in biomedical literature should be easy", [Abstract]. Neuroinformatics Conference 2014, http://www.frontiersin.org/10.3389/conf.fninf.2014.18.00080/event_abstract?sname=Neuroinformatics_2014, 2014
  5. Martone ME, Haendel MA, Mungall CJ, Vasilevsky N, Washington N, Hochheiser H, Lewis S, Gupta A, Grethe J. "The Monarch Initiative: A system for translating phenotypes between model organisms and human disease", [Abstract]. Society for Neuroscience 2014, Washington, DC, USA., November 15-19, 2014
  6. Nicole A. Vasilevsky, Matthew H. Brush, Holly Paddock, Laura Ponting, Shreejoy J. Tripathy, Gregory M. LaRocca, Melissa A. Haendel. "On the reproducibility of science: unique identification of research resources in the biomedical literature", [Poster presentation]. Data Information Literacy Symposium, Purdue University, West Lafayette, Indiana, USA. http://docs.lib.purdue.edu/dilsymposium/2013/posters/13/, September 22, 2013
  7. Vasilevsky N. "On the reproducibility of science: Unique Identification of Research Resources in the Biomedical Literature", [Conference session]. OHSU Research Week. OHSU, Portland, OR, USA., May 2013  

Molecular Biology

  1. Joshua Corn, Katherine Hampilos, Haruka Ito, Deanne Tibbitts, Morgan Schafer, Leslie Fuller, Douglas Hanes, Nicole Vasilevsky. "Antimicrobial effects of ethanol extracts of the Hydrastis canadensis, Commiphora habessinica, Phytolacca americana, and Echinacea purpurea (HMPE) formula on Staphylococcus epidermidis and Escherichia coli", [Poster presentation]. Academy of Integrative Health & Medicine conference. San Diego, CA, USA, October 2015
  2. Vasilevsky, N and Weinberg, A. "The role of Mad4, Mnt and c-Myc proteins in OX40 stimulated T cells", [Conference session]. American Association of Immunologists Annual Meeting, Seattle, WA, USA., May 12, 2009 
  3. Vasilevsky, N and Weinberg, A. "The role of Mad4, Mnt and c-Myc proteins in OX40 stimulated T cells", [Conference session]. Tumor Vaccine and Cell Therapy Working Group, University of Washington, Seattle, WA, USA, May 08, 2009
  4. Nicole A. Vasilevsky and Andrew D. Weinberg. "The role of Mad4, Mnt and c-Myc proteins in OX40 stimulated T cells", [Poster presentation]. American Association of Immunologists Meeting, Abstract #33.26. J. Immunol., 182: 33.26, 2009, May 12, 2009
  5. Matthew Wagner, Nicole Weksler, James Loos, Nicole Vasilevsky, Tomasz M. Beer, John M. Barry, Mark Garzotto. "Cox-2 expression and effects of selective inhibition in prostate cancer cell lines", [Abstract]. American Urological Assn Meeting, Abstract #452, J Urol 167:135A, 2002, 2002