version.xml

<package name="CoalRe" version="2.0.1">
  <depends on='BEAST.base' atleast='2.7.2'/>
  <depends on='BEAST.app' atleast='2.7.2'/>

  <packageapp class="coalre.networkannotator.ReassortmentNetworkSummarizer"
            description="ReassortmentNetworkSummarizer"/>

  <packageapp class="coalre.networkannotator.ReassortmentDistance"
            description="ReassortmentDistance"/>

  <packageapp class="coalre.networkannotator.TipDistanceReassortmentRate"
            description="TipDistanceReassortmentRate"/>

  <packageapp class="coalre.networkannotator.ExtantReassortmentRate"
            description="ExtantReassortmentRate"/>

  <packageapp class="coalre.networkannotator.ReassortmentOverTime"
            description="ReassortmentOverTime"/>

  <packageapp class="coalre.networkannotator.ExtractReassortmentEvents"
            description="ExtractReassortmentEvents"/>


      <service type="beast.base.core.BEASTInterface">
        <provider classname="coalre.distribution.CoalescentWithReassortment"/>
        <provider classname="coalre.distribution.emptyNetworkEdgesPrior"/>
        <provider classname="coalre.distribution.NetworkDistribution"/>
        <provider classname="coalre.distribution.NetworkIntervals"/>
        <provider classname="coalre.distribution.TipPrior"/>
        <provider classname="coalre.network.Network"/>
        <provider classname="coalre.network.SegmentTreeInitializer"/>
        <provider classname="coalre.operators.AddRemoveReassortment"/>
        <provider classname="coalre.operators.AddRemoveReassortmentCoalescent"/>
        <provider classname="coalre.operators.DivertSegmentOperator"/>
        <provider classname="coalre.operators.GibbsOperatorAboveSegmentRoots"/>
        <provider classname="coalre.operators.MultiTipDatesRandomWalker"/>
        <provider classname="coalre.operators.NetworkExchange"/>
        <provider classname="coalre.operators.NetworkScaleOperator"/>
        <provider classname="coalre.operators.SubNetworkSlide"/>
        <provider classname="coalre.operators.TipReheight"/>
        <provider classname="coalre.operators.UniformNetworkNodeHeightOperator"/>
        <provider classname="coalre.operators.UniformReassortmentReheight"/>
        <provider classname="coalre.simulator.SimulatedCoalescentNetwork"/>
        <provider classname="coalre.simulator.SIRwithReassortment"/>
        <provider classname="coalre.simulator.SuperspreadingSIRwithReassortment"/>
        <provider classname="coalre.simulator.SuperspreadingStructuredSIRwithReassortment"/>
        <provider classname="coalre.statistics.NetworkStatsLogger"/>
        <provider classname="coalre.statistics.ReassortmentEventsLogger"/>
        <provider classname="coalre.statistics.ReassortmentStatsLogger"/>
        <provider classname="coalre.util.DateOffsetInitializer"/>
        <provider classname="coalre.util.DummyTreeDistribution"/>
        <provider classname="coalre.util.SpikeSlabParameter"/>
        <provider classname="coalre.util.WeightedSumDistribution"/>
        <provider classname="coalre.util.InitFromTree"/>
        <provider classname="coalre.dynamics.RecombinationDynamicsFromSpline"/>
        <provider classname="coalre.dynamics.Spline"/>
        <provider classname="coalre.dynamics.NeDynamicsFromSpline"/>
        <provider classname="coalre.dynamics.SplineTransmissionDifference"/>
        <provider classname="coalre.dynamics.PiecewiseConstantReassortmentRates"/>
        <provider classname="coalre.dynamics.PiecewiseConstantReassortmentRateScalers"/>
        <provider classname="coalre.dynamics.Difference"/>
        <provider classname="coalre.dynamics.LogDifference"/>
    </service>

</package>