Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

module for Baysor #8

Open
heylf opened this issue Mar 14, 2024 · 1 comment
Open

module for Baysor #8

heylf opened this issue Mar 14, 2024 · 1 comment

Comments

@heylf
Copy link
Collaborator

heylf commented Mar 14, 2024

Description of feature

Repo
https://github.com/kharchenkolab/Baysor

Description of feature
https://www.10xgenomics.com/analysis-guides/using-baysor-to-perform-xenium-cell-segmentation

Input
Output
Implementation requirements
pthon/R/...?
conda?
docker/singularity?
License?

@khersameesh24
Copy link
Collaborator

khersameesh24 commented Aug 22, 2024

Bioconda recipe for Baysor - failure due to issues with the way the executable is generated while installing the Baysor julia package. Both build.sh and meta.yaml files are available for further fixes. Plan currently put on hold. Proceed with the docker image provided by the developers.

Module baysor - segfree, run submodules - nf-test cases with xeniumranger integration remain - needs extensive testing

@heylf heylf added the prio2 label Sep 6, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants