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Add support to use the pipeline with NGS generated using zymo research kit #1337
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I presume you can analyze the data already with the current pipeline version. After all, the parameter suggestions/UMI settings are just examples and not an exhaustive list. So if your favorite kit is not named, you could still make it work by choosing the pipeline parameters accordingly. All the listed settings and recommendations in the docs have been worked out by users of the pipeline and kindly shared with everyone else. I appreciate, that the complexity of the pipeline can be overwhelming, and we are happy to help, if you can't figure something out, but please make an own effort first. Instead of just opening an issue with the URL to the kit's manual for others to read it for you, please summarize the key characteristics of the kit and propose some parameter settings that seem appropriate to you. Then we are happy to chime in and double-check for your peace of mind. Thanks. |
Thanks, a lot, |
No worries, I didn't take offense. Becoming familiar with git and GitHub takes a while for everyone, and it is great to see new members in the nf-core community. Welcome! If you like, you can join the Slack workspace as well, which is our community's main discussion platform. Here, we have multiple dedicated channels for topics ranging from |
Description of feature
https://www.zymoresearch.de/products/zymo-seq-switchfree-3-mrna-library-kit
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