From 06fa8620462973ce85f8a2aa8eda6759b56a4a5c Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 28 May 2024 11:03:08 +0200
Subject: [PATCH] update module

---
 .nf-core.yml                                  |  2 +-
 modules.json                                  | 44 +++++--------------
 modules/nf-core/csvtk/join/tests/main.nf.test |  1 -
 3 files changed, 13 insertions(+), 34 deletions(-)

diff --git a/.nf-core.yml b/.nf-core.yml
index e0682e5..448dcec 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -1,4 +1,4 @@
 repository_type: pipeline
 nf_core_version: "2.14.1"
 lint:
-  files_exist:  conf/igenomes.config
\ No newline at end of file
+  files_exist: conf/igenomes.config
diff --git a/modules.json b/modules.json
index c0b6a1a..ebcffec 100644
--- a/modules.json
+++ b/modules.json
@@ -8,51 +8,37 @@
                     "csvtk/concat": {
                         "branch": "master",
                         "git_sha": "cfe2a24902bfdfe8132f11461ffda92d257f9f09",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "csvtk/join": {
                         "branch": "master",
-                        "git_sha": "5e0c5677ea33b3d4c3793244035a191bd03e6736",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "git_sha": "614abbf126f287a3068dc86997b2e1b6a93abe20",
+                        "installed_by": ["modules"]
                     },
                     "fastme": {
                         "branch": "master",
                         "git_sha": "5f4e755fdc22c6e40d740ab27ea9b1004e806cb5",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "fastqc": {
                         "branch": "master",
                         "git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "iqtree": {
                         "branch": "master",
                         "git_sha": "ba03053ffa300ccdd044545131ba033b73f327fe",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/align": {
                         "branch": "master",
                         "git_sha": "5c82ca0a942f2793859bb2f25601eb69c50590dc",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     }
                 }
             },
@@ -61,26 +47,20 @@
                     "utils_nextflow_pipeline": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
                         "git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfvalidation_plugin": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     }
                 }
             }
         }
     }
-}
\ No newline at end of file
+}
diff --git a/modules/nf-core/csvtk/join/tests/main.nf.test b/modules/nf-core/csvtk/join/tests/main.nf.test
index ca88531..3cf178c 100644
--- a/modules/nf-core/csvtk/join/tests/main.nf.test
+++ b/modules/nf-core/csvtk/join/tests/main.nf.test
@@ -34,7 +34,6 @@ nextflow_process {
 
     }
 
-    // TODO nf-core: Change the test name preferably indicating the test-data and file-format used but keep the " - stub" suffix.
     test("join - csv - stub") {
 
         options "-stub"