diff --git a/modules/local/bwa-mem2/mem/main.nf b/modules/local/bwa-mem2/mem/main.nf index 2a8ac501..d12f7356 100644 --- a/modules/local/bwa-mem2/mem/main.nf +++ b/modules/local/bwa-mem2/mem/main.nf @@ -33,6 +33,7 @@ process BWAMEM2_ALIGN { bwa-mem2 mem \\ ${args} \\ -Y \\ + -K 100000000 \\ -R '${read_group_tag}' \\ -t ${task.cpus} \\ ${genome_fasta} \\