Added nf-test for tiara/tiara

modules/nf-core/tiara/tiara/meta.yml

@@ -11,7 +11,7 @@ tools:
       documentation: https://ibe-uw.github.io/tiara/"
       tool_dev_url: "https://github.com/ibe-uw/tiara"
       doi: "10.1093/bioinformatics/btab672"
-      licence: "MIT"
+      licence: ["MIT"]
 input:
   - meta:
       type: map

modules/nf-core/tiara/tiara/tests/main.nf.test

@@ -0,0 +1,42 @@
+
+nextflow_process {
+
+    name "Test Process TIARA_TIARA"
+    script "../main.nf"
+    process "TIARA_TIARA"
+    config "./nextflow.config"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "tiara"
+    tag "tiara/tiara"
+
+    test("illumina-contigs-fa") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/prokaryotes/bacteroides_fragilis/illumina/fasta/test1.contigs.fa.gz', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(
+					process.out.classifications,
+					file(process.out.log[0][1]).name,
+					process.out.fasta,
+					process.out.versions
+					).match()
+				}
+            )
+        }
+    }
+
+}

modules/nf-core/tiara/tiara/tests/main.nf.test.snap

@@ -0,0 +1,27 @@
+{
+    "test-tiara-tiara": {
+        "content": [
+            [
+                [
+                    {
+                        "id": "test",
+                        "single_end": false
+                    },
+                    "test.txt:md5,1e4a4d8081c20b2540316fb9fafb5ad3"
+                ]
+            ],
+            "log_test.txt",
+            [
+
+            ],
+            [
+                "versions.yml:md5,4eeba8074325fb450c1cddd731431cc4"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-23T09:49:05.091671"
+    }
+}

modules/nf-core/tiara/tiara/tests/nextflow.config

@@ -0,0 +1,5 @@
+process {
+    withName: TIARA_TIARA {
+        ext.args = "--tf bac"
+    }
+}

tests/config/pytest_modules.yml

@@ -1542,9 +1542,6 @@ tailfindr:
 tbprofiler/profile:
   - modules/nf-core/tbprofiler/profile/**
   - tests/modules/nf-core/tbprofiler/profile/**
-tiara/tiara:
-  - modules/nf-core/tiara/tiara/**
-  - tests/modules/nf-core/tiara/tiara/**
 topas/gencons:
   - modules/nf-core/topas/gencons/**
   - tests/modules/nf-core/topas/gencons/**