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Use seqkit? #18

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FriederikeHanssen opened this issue Sep 11, 2020 · 0 comments
Open

Use seqkit? #18

FriederikeHanssen opened this issue Sep 11, 2020 · 0 comments

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@FriederikeHanssen
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Some of the samtools steps in the beginning could possibly be replaced with seqkit pair . First do samtools fastq, then make the pairs match. Keep in mind the read order of collate though.
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@FriederikeHanssen