From c28710cd8a752acb19d1ccc06d34a12137ca8f73 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Wed, 3 Jul 2024 10:24:38 +0200 Subject: [PATCH] chore: release 3.8.0 --- CHANGELOG.md | 14 ++++++++++++++ Cargo.lock | 6 +++--- Cargo.toml | 2 +- packages/nextclade-web/package.json | 2 +- 4 files changed, 19 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 46e2b7e6a..ce323d43b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,17 @@ +## Nextclade 3.8.0 + +### Relative mutations + +Nextclade now calls mutations relative to multiple targets. Additionally to previously available mutations relative to reference and mutations relative to parent tree node (private mutations), Nextclade now calls mutations relative to clade founder tree nodes, and relative to custom nodes of interest if defined in the dataset (e.g. vaccine strains). + +Nextclade Web now has an additional dropdown selector for the target of mutation calling. Output files has new columns/fields for mutations relative to clade founders (`founderMuts`) as well as for mutations relative to custom nodes (`relativeMutations`). + +See [documentation](https://docs.nextstrain.org/projects/nextclade/en/stable/user/algorithm/05-mutation-calling.html) for more details. + +### Update Auspice tree visualization to 2.56.0 + +Auspice tree visualization package has been updated from 2.55.0 to 2.56.0. See Auspice changelog [here](https://github.com/nextstrain/auspice/releases). + ## Nextclade 3.7.4 ### Nextclade Web diff --git a/Cargo.lock b/Cargo.lock index afe51fa06..4d01e1140 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1711,7 +1711,7 @@ dependencies = [ [[package]] name = "nextclade" -version = "3.7.4" +version = "3.8.0" dependencies = [ "assert2", "atty", @@ -1774,7 +1774,7 @@ dependencies = [ [[package]] name = "nextclade-cli" -version = "3.7.4" +version = "3.8.0" dependencies = [ "assert2", "clap", @@ -1816,7 +1816,7 @@ dependencies = [ [[package]] name = "nextclade-web" -version = "3.7.4" +version = "3.8.0" dependencies = [ "assert2", "chrono", diff --git a/Cargo.toml b/Cargo.toml index b323a231c..19dd12486 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -12,7 +12,7 @@ exclude = [ [workspace.package] name = "nextclade" -version = "3.7.4" +version = "3.8.0" description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. Library module." repository = "https://github.com/nextstrain/nextclade" documentation = "https://docs.nextstrain.org/projects/nextclade/en/stable/" diff --git a/packages/nextclade-web/package.json b/packages/nextclade-web/package.json index 90ccb05de..54432f901 100644 --- a/packages/nextclade-web/package.json +++ b/packages/nextclade-web/package.json @@ -1,6 +1,6 @@ { "name": "@nextstrain/nextclade-web", - "version": "3.7.4", + "version": "3.8.0", "description": "Clade assignment, mutation calling, and sequence quality checks", "homepage": "https://clades.nextstrain.org", "repository": {