diff --git a/CHANGELOG.md b/CHANGELOG.md index 4edbe6686..97be2ab1d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,14 @@ +## Nextclade CLI 2.13.1 (2023-03-28) + +### Lower verbosity level of translation-related warnings in Nextclade CLI + +Warnings related to translation of peptides now have verbosity level "info", down from "warning", to reduce clutter in logs. You can still find all errors and warnings in the "errors" and "warnings" columns of the CSV and TSV output files, as well as in the corresponding fields of JSON output files. If you want these warnings to be printed into the console, you can increase Nextclade CLI verbosity level to "info" by adding at least one occurrence of `--verbose` (`-v`) flag or by explicitly setting `--verbosity=info` or to a lower value. Type `nextclade run --help` for more details. + +### Internal changes + + - Add more smoke tests, including for datasets with default reference + + ## Nextclade Web 2.13.0, Nextclade CLI 2.13.0 (2023-03-21) ### Attach sequences to a priori most likely node if reference tree contains "placement_prior" diff --git a/Cargo.lock b/Cargo.lock index 233092760..f0d1aba04 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1449,7 +1449,7 @@ dependencies = [ [[package]] name = "nextclade" -version = "2.13.0" +version = "2.13.1" dependencies = [ "assert2", "atty", @@ -1501,7 +1501,7 @@ dependencies = [ [[package]] name = "nextclade-cli" -version = "2.13.0" +version = "2.13.1" dependencies = [ "assert2", "clap 3.1.18", @@ -1539,7 +1539,7 @@ dependencies = [ [[package]] name = "nextclade-web" -version = "2.13.0" +version = "2.13.1" dependencies = [ "assert2", "console_error_panic_hook", diff --git a/packages_rs/nextclade-cli/Cargo.toml b/packages_rs/nextclade-cli/Cargo.toml index 12bf47e05..7ffc0eb67 100644 --- a/packages_rs/nextclade-cli/Cargo.toml +++ b/packages_rs/nextclade-cli/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "nextclade-cli" -version = "2.13.0" +version = "2.13.1" description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. CLI module." repository = "https://github.com/nextstrain/nextclade" documentation = "https://docs.nextstrain.org/projects/nextclade/en/stable/" diff --git a/packages_rs/nextclade-web/Cargo.toml b/packages_rs/nextclade-web/Cargo.toml index becd7dd1a..bfb0616d5 100644 --- a/packages_rs/nextclade-web/Cargo.toml +++ b/packages_rs/nextclade-web/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "nextclade-web" -version = "2.13.0" +version = "2.13.1" description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. WebAssembly module." edition = "2021" license = "MIT" diff --git a/packages_rs/nextclade/Cargo.toml b/packages_rs/nextclade/Cargo.toml index 6666339d0..454c6e5a2 100644 --- a/packages_rs/nextclade/Cargo.toml +++ b/packages_rs/nextclade/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "nextclade" -version = "2.13.0" +version = "2.13.1" description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. Library module." repository = "https://github.com/nextstrain/nextclade" documentation = "https://docs.nextstrain.org/projects/nextclade/en/stable/"