funannotate v0.1.8

• fix bug in funannotate compare where script would crash if gene models that had the same base name
• added funannotate check a little script to tell you if Python modules are up to date

funannotate v0.1.7

• fix install setup.sh script if first home-brew installation it defaults to asking user for DB install path
• updated some docs to reflect some installation changes that were not properly documented in last release

funannotate v0.1.6

update to setup.sh script.

• If update funanntoate through home-brew, script will automatically detect previous version database and setup symlink. This will avoid having to setup DB every time there is an update.
• on first install, allows user to specify custom path for installation directory

funannotate v0.1.5

Bug fixes:

• fixed variable naming resulting in centOS error
• allow user to specify database install folder in the setup.sh script as some systems don't have access to /usr/local/share
• remove bundled proteinortho5 as some users don't have sudo privileges, now ProteinOrtho installs using HomeBrew or LinuxBrew

Enhancements

• added support for --maker_gff for funannotate predict that will parse a MAKER2 GFF file to EVM inputs. Providing a MAKER2 GFF file will bypass the evidence mapping and predictions steps of funannotate and use the data in the MAKER2 file.

funannotate v0.1.4

• improved logging and error reporting to try to catch user input errors and/or funannotate setup

funannotate v0.1.3

• minor bug fixes and update of documentation

funannotate v0.1.2

A few minor bug fixes.

• moved the DB folder to install in /usr/local/share/funannotate to avoid having to reinstall all databases if upgraded funannotate through brew

funannotate v0.1.1

Update to setup.sh script to fix an error during installation.