From e527ebb554405229095d76c3cd9d930da022f946 Mon Sep 17 00:00:00 2001 From: James Kent Date: Wed, 7 Feb 2024 17:33:31 -0600 Subject: [PATCH] do not add n_cores to fdr corrector --- compose_runner/run.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/compose_runner/run.py b/compose_runner/run.py index 50f13c2..392bf50 100644 --- a/compose_runner/run.py +++ b/compose_runner/run.py @@ -10,6 +10,7 @@ # from neurosynth_compose_sdk.api.compose_api import ComposeApi # import neurostore_sdk # from neurostore_sdk.api.store_api import StoreApi +from nimare.correct import FDRCorrector from nimare.workflows import CBMAWorkflow, PairwiseCBMAWorkflow from nimare.meta.cbma.base import CBMAEstimator, PairwiseCBMAEstimator from nimare.nimads import Studyset, Annotation @@ -110,7 +111,6 @@ def run_workflow(self, no_upload=False, n_cores=None): self.create_result_object() self.upload_results() - def download_bundle(self): meta_analysis_resp = requests.get( f"{self.compose_url}/meta-analyses/{self.meta_analysis_id}?nested=true" @@ -397,9 +397,9 @@ def load_specification(self, n_cores=None): cor_mod = import_module(".".join(["nimare", "correct"])) corrector = getattr(cor_mod, spec["corrector"]["type"]) cor_args = {**spec["corrector"]["args"]} if spec["corrector"].get("args") else {} - if n_cores is not None: + if n_cores is not None and corrector is not FDRCorrector: cor_args["n_cores"] = n_cores - if cor_args.get("n_iters") is not None: + if cor_args.get("n_iters") is not None and corrector is not FDRCorrector: cor_args["n_iters"] = int(cor_args["n_iters"]) if cor_args.get("**kwargs") is not None: for k, v in cor_args["**kwargs"].items():