module 'tensortools.cpwarp.padded_shifts' has no attribute 'transpose_shift_one_trial'

[Davidoreilly12]

The following error occurred when fitting the multishift_hals function. Having looked at the padded_shift script, there is no function with this name..can you advise? Thank you

[Davidoreilly12]

the names of the functions in both the padded_shift and periodic_shift scripts have changed and this change is not reflected in the multishift.py script...

[ahwillia]

Thanks! I wasn't paying attention to multishift.py in a while so this got broken. I took a stab at fixing it -- ahwillia@f6d2f0a

Let me know if that stopped the errors. If yes, does the output look reasonable?

[Davidoreilly12]

Hi,

Thanks for the quick response, following a reinstall of the package, your adjustment has fixed the original error but a new one has come up:

---

TypingError Traceback (most recent call last)
in
----> 1 multishift_hals(
2 mat['EMGall'].transpose(2,1,0), 3, shiftedonly['Shifts'], shiftedonly['Templates'], min_iter=10,
3 max_iter=1000, tol=1e-4, warp_iterations=50, max_shift=.5,
4 shift_reg=1e-6, periodic_boundaries=False, patience=5, seed=None)

c:\users\david\appdata\local\programs\python\python38\lib\site-packages\numba\core\dispatcher.py in _compile_for_args(self, *args, **kws)
413 e.patch_message(msg)
414
--> 415 error_rewrite(e, 'typing')
416 except errors.UnsupportedError as e:
417 # Something unsupported is present in the user code, add help info

c:\users\david\appdata\local\programs\python\python38\lib\site-packages\numba\core\dispatcher.py in error_rewrite(e, issue_type)
356 raise e
357 else:
--> 358 reraise(type(e), e, None)
359
360 argtypes = []

c:\users\david\appdata\local\programs\python\python38\lib\site-packages\numba\core\utils.py in reraise(tp, value, tb)
78 value = tp()
79 if value.traceback is not tb:
---> 80 raise value.with_traceback(tb)
81 raise value
82

TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Internal error at <numba.core.typeinfer.CallConstraint object at 0x00000200A7010430>.
too many positional arguments
During: resolving callee type: type(CPUDispatcher(<function shift_gram at 0x00000200A6485310>))
During: typing of call at c:\users\david\appdata\local\programs\python\python38\lib\site-packages\tensortools\cpwarp\multishift.py (190)

Enable logging at debug level for details.

File "......\appdata\local\programs\python\python38\lib\site-packages\tensortools\cpwarp\multishift.py", line 190:
def multishift_hals(

# Compute gram matrices.
c, a = periodic_shifts.shift_gram(
^