From cca549084cd36aa78ec79a67821184ce0b5fee99 Mon Sep 17 00:00:00 2001
From: "neurobagel-bot[bot]"
 <176077434+neurobagel-bot[bot]@users.noreply.github.com>
Date: Mon, 11 Nov 2024 13:32:16 -0500
Subject: [PATCH] =?UTF-8?q?=F0=9F=94=84=20synced=20file(s)=20with=20neurob?=
 =?UTF-8?q?agel/workflows=20(#135)?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* 🔄 synced local '.github/workflows/' with remote 'template_workflows/project_automation/'

* 🔄 synced local '.github/workflows/build_docker_on_release.yml' with remote 'template_workflows/auto_release/build_docker_on_release.yml'

* 🔄 synced local '.github/workflows/build_docker_nightly.yml' with remote 'template_workflows/build_docker_nightly.yml'

---------

Co-authored-by: neurobagel-bot[bot] <176077434+neurobagel-bot[bot]@users.noreply.github.com>
---
 .github/workflows/add_iss2project.yml         | 9 ++++++++-
 .github/workflows/build_docker_nightly.yml    | 3 +++
 .github/workflows/build_docker_on_release.yml | 3 +++
 3 files changed, 14 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/add_iss2project.yml b/.github/workflows/add_iss2project.yml
index 30d57fc..32c3d18 100644
--- a/.github/workflows/add_iss2project.yml
+++ b/.github/workflows/add_iss2project.yml
@@ -10,7 +10,14 @@ jobs:
     name: Add issue to project
     runs-on: ubuntu-latest
     steps:
+      - name: Generate a token
+        id: generate-token
+        uses: actions/create-github-app-token@v1
+        with:
+          app-id: ${{ vars.NB_BOT_ID }}
+          private-key: ${{ secrets.NB_BOT_KEY }}
+
       - uses: actions/add-to-project@main
         with:
           project-url: https://github.com/orgs/neurobagel/projects/1
-          github-token: ${{ secrets.NB_PROJECT_PAT }}
+          github-token: ${{ steps.generate-token.outputs.token }}
diff --git a/.github/workflows/build_docker_nightly.yml b/.github/workflows/build_docker_nightly.yml
index f47c26f..44fb74d 100644
--- a/.github/workflows/build_docker_nightly.yml
+++ b/.github/workflows/build_docker_nightly.yml
@@ -12,6 +12,9 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
+        # Some repos have submodules that need to be part of the Docker image
+        with:
+          submodules: recursive
 
       - name: Login to Docker Hub
         uses: docker/login-action@v3
diff --git a/.github/workflows/build_docker_on_release.yml b/.github/workflows/build_docker_on_release.yml
index 7e3a1cc..f229bcd 100644
--- a/.github/workflows/build_docker_on_release.yml
+++ b/.github/workflows/build_docker_on_release.yml
@@ -11,6 +11,9 @@ jobs:
       -
         name: Checkout
         uses: actions/checkout@v4
+        # Some repos have submodules that need to be part of the Docker image
+        with:
+          submodules: recursive
       - 
         # The release event is a superset of the push tag event, 
         # so we expect two tags to be generated by docker/metadata-action