diff --git a/src/main/java/net/neoforged/automation/Configuration.java b/src/main/java/net/neoforged/automation/Configuration.java
index 0e1d9d0..b136596 100644
--- a/src/main/java/net/neoforged/automation/Configuration.java
+++ b/src/main/java/net/neoforged/automation/Configuration.java
@@ -18,11 +18,11 @@ public record Configuration(
         PRActions prActions,
         Map<String, RepoConfiguration> repositories
 ) {
-    public record RepoConfiguration(Boolean enabled, Map<String, LabelLock> labelLocks, List<String> formattingTasks) {
+    public record RepoConfiguration(Boolean enabled, Map<String, LabelLock> labelLocks, @Nullable String baseRunCommand, String runUploadPattern) {
         public RepoConfiguration {
             enabled = enabled == null || enabled;
         }
-        public static final RepoConfiguration DEFAULT = new RepoConfiguration(true, Map.of(), List.of());
+        public static final RepoConfiguration DEFAULT = new RepoConfiguration(true, Map.of(), null, null);
     }
 
     private static final ObjectMapper MAPPER = new ObjectMapper(new YAMLFactory().disable(YAMLGenerator.Feature.WRITE_DOC_START_MARKER).enable(YAMLGenerator.Feature.LITERAL_BLOCK_STYLE));
diff --git a/src/main/java/net/neoforged/automation/command/Commands.java b/src/main/java/net/neoforged/automation/command/Commands.java
index 29faabb..4ec660e 100644
--- a/src/main/java/net/neoforged/automation/command/Commands.java
+++ b/src/main/java/net/neoforged/automation/command/Commands.java
@@ -2,41 +2,48 @@
 
 import com.mojang.brigadier.CommandDispatcher;
 import com.mojang.brigadier.arguments.ArgumentType;
+import com.mojang.brigadier.arguments.StringArgumentType;
 import com.mojang.brigadier.builder.LiteralArgumentBuilder;
 import com.mojang.brigadier.builder.RequiredArgumentBuilder;
 import net.neoforged.automation.Configuration;
 import net.neoforged.automation.command.api.GHCommandContext;
 import net.neoforged.automation.util.FunctionalInterfaces;
 
+import java.util.Arrays;
+import java.util.stream.Collectors;
+
 public class Commands {
     public static CommandDispatcher<GHCommandContext> register(CommandDispatcher<GHCommandContext> dispatcher) {
-        dispatcher.register(literal("applyFormatting")
+        dispatcher.register(literal("run")
                 .requires(Requirement.IS_PR.and(Requirement.IS_MAINTAINER.or(Requirement.IS_PR)))
-                .executes(FunctionalInterfaces.throwingCommand(context -> {
-                    var pr = context.getSource().pullRequest();
-                    var config = Configuration.get();
-                    var repoConfig = Configuration.get(context.getSource().repository());
-                    if (!repoConfig.formattingTasks().isEmpty()) {
-                        var comment = pr.comment("Applying formatting...");
-                        FormattingCommand.run(
-                                context.getSource().gitHub(), pr,
-                                config.prActions(), repoConfig,
-                                err -> {
-                                    context.getSource().onError().run();
-                                    try {
-                                        context.getSource().issue()
-                                                .comment("Workflow failed: " + err.getHtmlUrl());
-                                    } catch (Exception ex) {
-                                        throw new RuntimeException(ex);
+                    .then(argument("tasks", StringArgumentType.greedyString()))
+                    .executes(FunctionalInterfaces.throwingCommand(context -> {
+                        var pr = context.getSource().pullRequest();
+                        var config = Configuration.get();
+                        var repoConfig = Configuration.get(context.getSource().repository());
+                        if (repoConfig.baseRunCommand() != null) {
+                            var tasks = context.getArgument("tasks", String.class).trim();
+                            var comment = pr.comment("Running Gradle tasks `" + tasks + "`...");
+                            FormattingCommand.run(
+                                    context.getSource().gitHub(), pr,
+                                    config.prActions(), repoConfig,
+                                    Arrays.stream(tasks.split(" ")).map(t -> "./gradlew " + t).collect(Collectors.joining(" && ")),
+                                    err -> {
+                                        context.getSource().onError().run();
+                                        try {
+                                            context.getSource().issue()
+                                                    .comment("Workflow failed: " + err.getHtmlUrl());
+                                        } catch (Exception ex) {
+                                            throw new RuntimeException(ex);
+                                        }
+                                    }, () -> {
+                                        context.getSource().onSuccess().run();
+                                        FunctionalInterfaces.ignoreExceptions(comment::delete);
                                     }
-                                }, () -> {
-                                    context.getSource().onSuccess().run();
-                                    FunctionalInterfaces.ignoreExceptions(comment::delete);
-                                }
-                        );
-                    }
-                    return GHCommandContext.DEFERRED_RESPONSE;
-                })));
+                            );
+                        }
+                        return GHCommandContext.DEFERRED_RESPONSE;
+                    })));
 
         return dispatcher;
     }
diff --git a/src/main/java/net/neoforged/automation/command/FormattingCommand.java b/src/main/java/net/neoforged/automation/command/FormattingCommand.java
index 871cf63..4ca9409 100644
--- a/src/main/java/net/neoforged/automation/command/FormattingCommand.java
+++ b/src/main/java/net/neoforged/automation/command/FormattingCommand.java
@@ -17,10 +17,10 @@
 
 public class FormattingCommand {
 
-    public static void run(GitHub gh, GHPullRequest pr, Configuration.PRActions actions, Configuration.RepoConfiguration repoConfiguration, Consumer<GHWorkflowRun> onFailure, Runnable onSuccess) throws IOException {
+    public static void run(GitHub gh, GHPullRequest pr, Configuration.PRActions actions, Configuration.RepoConfiguration repoConfiguration, String command, Consumer<GHWorkflowRun> onFailure, Runnable onSuccess) throws IOException {
         PRActionRunner.builder(pr)
-                .upload("src*/main/java/")
-                .command(repoConfiguration.formattingTasks())
+                .upload(repoConfiguration.runUploadPattern())
+                .command(repoConfiguration.baseRunCommand(), command)
                 .onFailed((gitHub, run) -> onFailure.accept(run))
                 .onFinished((gitHub, run, artifact) -> {
                     PRRunUtils.setupPR(pr, (dir, git) -> {